FFCP PHASE1:Hg19::chr3:129280127..129280161,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23129 | |EntrezGene=23129 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9107 | |HGNC=9107 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-228bp_to_ENST00000506979_5end | |association_with_transcript=-228bp_to_ENST00000506979_5end | ||
|cluster_id=chr3:129280127..129280161,- | |||
|coexpression_cluster_id=C2718 | |coexpression_cluster_id=C2718 | ||
|description=CAGE_peak_6_at_PLXND1_5end | |description=CAGE_peak_6_at_PLXND1_5end | ||
|id=chr3:129280127..129280161,- | |id=chr3:129280127..129280161,- | ||
|ontology_enrichment_celltype=CL:0002620;4.91e-16;23!CL:0000057;5.60e-10;73!CL:0002559;8.20e-08;5!CL:0002320;9.42e-08;188!CL:0002540;3.00e-07;6!CL:0002552;3.35e-07;5!CL:0002556;7.12e-07;6 | |ontology_enrichment_celltype=CL:0000055!7.77e-30!180;CL:0000057!4.98e-21!75;CL:0002620!1.03e-10!23;CL:0000680!3.29e-08!57;CL:0000056!3.29e-08!57;CL:0000355!3.29e-08!57;CL:0000183!2.46e-07!59;CL:0000187!5.13e-07!54;CL:0000222!5.22e-07!119 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;4.91e-16;23!CL:0000057;5.60e-10;73!CL:0002559;8.20e-08;5!CL:0002320;9.42e-08;188!CL:0002540;3.00e-07;6!CL:0002552;3.35e-07;5!CL:0002556;7.12e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.74e-22,76;CL:0002620,7.81e-16,23;CL:0000048,3.98e-09,427;CL:0000723,1.28e-08,433;CL:0002320,1.31e-08,361;CL:0000034,5.70e-08,441;CL:0002559,9.19e-08,5;CL:0002540,2.40e-07,6;CL:0002552,2.84e-07,5;CL:0002556,5.42e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001434;1.32e-11;36!UBERON:0004765;1.12e-09;26!UBERON:0002067;1.14e-09;9!UBERON:0000075;1.37e-09;16!UBERON:0002097;3.13e-09;41!UBERON:0002199;1.15e-08;46!UBERON:0002416;1.15e-08;46!UBERON:0003102;1.24e-08;50!UBERON:0002073;8.20e-08;5!UBERON:0002384;1.09e-07;198!UBERON:0011135;1.47e-07;5!UBERON:0002216;1.47e-07;5!UBERON:0011134;1.47e-07;5!UBERON:0002209;1.47e-07;5!UBERON:0002213;1.47e-07;5!UBERON:0007844;1.47e-07;5!UBERON:0011138;1.47e-07;5!UBERON:0001130;1.47e-07;5!UBERON:0001066;1.47e-07;5!UBERON:0001468;1.47e-07;5!UBERON:0004905;1.70e-07;8!UBERON:0000982;1.70e-07;8!UBERON:0004770;1.70e-07;8!UBERON:0002204;2.94e-07;70!UBERON:0001758;7.12e-07;6!UBERON:0003672;7.12e-07;6!UBERON:0001474;8.68e-07;18 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.46e-15!365;UBERON:0000914!1.61e-14!83;UBERON:0002329!1.61e-14!83;UBERON:0003077!1.61e-14!83;UBERON:0003059!1.61e-14!83;UBERON:0007282!1.61e-14!83;UBERON:0009618!1.61e-14!83;UBERON:0007285!1.61e-14!83;UBERON:0004290!1.91e-11!70;UBERON:0005256!2.27e-11!143;UBERON:0000481!2.99e-09!347;UBERON:0000486!5.09e-09!82;UBERON:0002100!5.66e-09!216;UBERON:0003102!2.22e-08!95;UBERON:0001134!8.34e-08!61;UBERON:0002036!8.34e-08!61;UBERON:0003082!8.34e-08!61;UBERON:0002385!1.23e-07!63;UBERON:0001015!1.23e-07!63;UBERON:0000383!1.23e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001434;1.32e-11;36!UBERON:0004765;1.12e-09;26!UBERON:0002067;1.14e-09;9!UBERON:0000075;1.37e-09;16!UBERON:0002097;3.13e-09;41!UBERON:0002199;1.15e-08;46!UBERON:0002416;1.15e-08;46!UBERON:0003102;1.24e-08;50!UBERON:0002073;8.20e-08;5!UBERON:0002384;1.09e-07;198!UBERON:0011135;1.47e-07;5!UBERON:0002216;1.47e-07;5!UBERON:0011134;1.47e-07;5!UBERON:0002209;1.47e-07;5!UBERON:0002213;1.47e-07;5!UBERON:0007844;1.47e-07;5!UBERON:0011138;1.47e-07;5!UBERON:0001130;1.47e-07;5!UBERON:0001066;1.47e-07;5!UBERON:0001468;1.47e-07;5!UBERON:0004905;1.70e-07;8!UBERON:0000982;1.70e-07;8!UBERON:0004770;1.70e-07;8!UBERON:0002204;2.94e-07;70!UBERON:0001758;7.12e-07;6!UBERON:0003672;7.12e-07;6!UBERON:0001474;8.68e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.51e-12,99;UBERON:0002199,2.12e-12,46;UBERON:0002416,2.12e-12,46;UBERON:0002097,3.21e-12,41;UBERON:0000075,1.08e-09,16;UBERON:0002067,2.30e-09,9;UBERON:0004016,2.30e-09,9;UBERON:0010083,2.30e-09,9;UBERON:0002384,5.13e-09,371;UBERON:0007524,2.16e-08,73;UBERON:0002329,5.14e-08,71;UBERON:0003059,5.14e-08,71;UBERON:0007282,5.14e-08,71;UBERON:0004290,5.14e-08,71;UBERON:0009618,5.14e-08,71;UBERON:0003077,8.61e-08,72;UBERON:0007285,8.61e-08,72;UBERON:0002073,9.19e-08,5;UBERON:0005086,9.19e-08,5;UBERON:0011137,1.25e-07,14;UBERON:0011135,1.34e-07,5;UBERON:0002216,1.34e-07,5;UBERON:0011134,1.34e-07,5;UBERON:0002209,1.34e-07,5;UBERON:0002213,1.34e-07,5;UBERON:0005856,1.34e-07,5;UBERON:0005866,1.34e-07,5;UBERON:0005863,1.34e-07,5;UBERON:0007844,1.34e-07,5;UBERON:0011138,1.34e-07,5;UBERON:0001130,1.34e-07,5;UBERON:0001066,1.34e-07,5;UBERON:0001468,1.34e-07,5;UBERON:0004905,2.47e-07,8;UBERON:0000982,2.47e-07,8;UBERON:0004770,2.47e-07,8;UBERON:0003104,3.75e-07,160;UBERON:0009142,3.75e-07,160;UBERON:0001758,5.42e-07,6;UBERON:0003672,5.42e-07,6;UBERON:0000486,9.82e-07,83 | |||
|phase1_expression=1.09007027562334,1.92690471501885,1.26858963686374,1.0007329835313,1.78784437770915,0.872338524100369,0,1.89515962028049,7.05201196139564,0,0,0.218441372130172,0.263766978228454,6.93091576576261,3.97676850873499,0,0,0,0,0.984968464614303,2.24400760368678,0.313454721478088,0.572471974262113,1.09499540058307,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,0,2.1686349143074,7.52006865953834,4.05570253090306,3.1811437882044,1.94653948121054,0.189069634328136,0.221729397462564,0.087834785693126,0.523916301990851,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0,0.516833518338658,0.35576626268671,0,0.402829317109147,0,0,0,0,0.446498641420399,0.673588117878509,0.225222960966644,1.53316637465883,0,0,0,0,0,0,0.506522046658319,0.662045904066094,2.29469296599051,0.709336764396714,3.36406560085384,0,0,4.35695449559673,0.942974704487816,0,0.454072282934794,0,1.64025002283658,3.74592092196385,1.1409436430889,2.98897361103602,1.52664848236894,1.13311061057692,1.12360645361799,6.94124182266637,3.19369225010597,9.09266874346736,3.56400857184616,2.96720315134268,5.46096817162816,6.46756327634615,4.37673896280572,3.25308151667107,1.93944880838928,2.63386572528503,2.14541457059314,1.50238058906597,0.453728732640084,1.4351170855109,5.12537733164562,4.66250182551036,1.20036438433761,2.57631323096097,4.3798891807757,3.35010341396862,2.19409231913646,1.94874010322397,1.26216887122057,6.71964260088785,4.84938170456436,3.19508633264953,0.906768884048762,2.88253006927829,0,0,0,0,0,0,0,0,0,6.25798129319264,4.5026865673502,4.14404764057442,5.57241513638375,9.38443326170461,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.8231480226628,2.94017422771084,0,0,0,0,0,0,0,0,0,0,4.56131627434455,6.23960871167747,0,0.115930404975077,0,0.433099343283221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0.784917590417525,0,0.2933531432838,0.517086863031111,3.57656445851882,0,1.59562869950922,0,2.82928111688356,2.83698264046557,1.3321108950805,1.42977993658148,18.4491345833091,7.40916303102692,0,2.13235169245527,0,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,1.67737398844108,4.59447743336456,4.27910715122155,1.01346914667305,5.54786070886035,3.22309733831812,0,0,0,0,0,0,0,0,0,0,0,0,4.17151071845076,7.50255781589516,4.6115054028955,5.40724239980099,5.53129865271201,3.31175071571263,3.98280810975225,2.70851489754947,2.27407504055985,2.0694614258501,0,1.29058417979192,3.12781012085098,4.30762546418029,2.40200396667599,0,0,0,0,0,0.30239029332968,0.496215615637554,0.153461973288062,0.841980283299221,1.92208723883551,3.07024349440022,0.482561763430822,5.93672265779964,0.154209693802656,0,0.657017248110473,0,0.581051892299796,0,0,0,0.459257792658427,0.546273504020151,1.83574180943194,0,0,1.56869953835371,1.46139224653261,0.105551628892876,0,0,0.215915916102139,0,0,0.501689773854853,0,0,1.11937377361089,0,0,0.512900250232778,0.984043937099117,0.325378394664303,0.103041011647722,7.05084879101244,5.85817449436175,0,0,0,1.93341436584244,0.924291702687866,0.460511024178389,0.551346289938122,1.71872391789238,1.88521702088497,0.340906509664404,1.06838442776085,0,0,0,0,1.39453664789186,0.94443704049192,0.6970372701606,0.616067160352178,0,0,0,0.572499546967965,0.744316738719335,0.632758849437452,1.71567174531442,3.07077349573601,1.28381696410176,0.636406495851874,0.78494864019923,2.51821440616641,2.19629623788844,1.29593642580255,0,1.58510321173008,0,1.46290121726877,0.243713489631284,0,1.22849920267187,1.69686518344455,0,0.551365343546124,0.66343897524122,0.876901770507525,1.73632660280006,1.9676842561399,0,0.92947049429925,0,0.717056761020258,1.08073945114433,0,0.354761064070598,1.05553817648832,1.31717957183961,7.5894634753143,11.1979110478395,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.996239941255349,0.276283915531148,0,0.511343412510774,0,0.311039587661807,0,0,0,0.591860433821602,0,3.33410970433911,0,0,0,0,0,0,0,0.254253650292766,0,0,0.291604613383254,0.520874984799877,0.885741385813839,0.241192877250816,0,0,0,0,0,0,1.53900517007594,1.13942055847001,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.337005664903385,0.802577647298789,0.468528891450678,0,0,0,0,0,0,0.189559738885464,0,0.103688191397247,1.99396161812156,0.330991955875499,0.627865836814451,1.19472429772959,0.284609546029793,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0.400794101257669,0.213452994739353,1.59847687665704,0,0,0.171594997861965,0,0,0,20.7933435292629,18.6193066435953,1.93796613509011,5.49006120812886,0,0.273810757783986,0,9.88460515265901,0,0.279282401272254,0.916641696046735,0,0,0.429226048136571,0.2231714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| ||
|short_description=p6@PLXND1 | |short_description=p6@PLXND1 | ||
}} | }} |
Latest revision as of 17:47, 24 September 2015
Short description: | p6@PLXND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PLXND1_5end |
Coexpression cluster: | C2718_Mesenchymal_glioblastoma_Cardiac_Pericytes_Trabecular_Olfactory_Hair |
Association with transcript: | -228bp_to_ENST00000506979_5end |
EntrezGene: | PLXND1 |
HGNC: | 9107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.74e-22 | 76 |
skin fibroblast | 7.81e-16 | 23 |
multi fate stem cell | 3.98e-09 | 427 |
somatic stem cell | 1.28e-08 | 433 |
connective tissue cell | 1.31e-08 | 361 |
stem cell | 5.70e-08 | 441 |
hair follicle cell | 9.19e-08 | 5 |
mesenchymal stem cell of the bone marrow | 2.40e-07 | 6 |
fibroblast of gingiva | 2.84e-07 | 5 |
fibroblast of periodontium | 5.42e-07 | 6 |