FFCP PHASE1:Hg19::chr4:106473806..106473821,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54848 | |EntrezGene=54848 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25968 | |HGNC=25968 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIB4 | |UniProt=C9JIB4 | ||
|association_with_transcript=27bp_to_ENST00000420470_5end | |association_with_transcript=27bp_to_ENST00000420470_5end | ||
|cluster_id=chr4:106473806..106473821,+ | |||
|coexpression_cluster_id=C2767 | |||
|description=CAGE_peak_3_at_ARHGEF38_5end | |description=CAGE_peak_3_at_ARHGEF38_5end | ||
|id=chr4:106473806..106473821,+ | |id=chr4:106473806..106473821,+ | ||
|ontology_enrichment_celltype=CL:0002322!7.23e-08!5 | |ontology_enrichment_celltype=CL:0002322!7.23e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002178;3.84e-09;3!CL:0000167;2.16e-07;1!CL:0000164;2.16e-07;1!CL:0000502;2.16e-07;1!CL:0000172;2.16e-07;1!CL:0000173;2.16e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,3.92e-09,3;CL:0000167,1.63e-07,1;CL:0000164,1.63e-07,1;CL:0000502,1.63e-07,1;CL:0000172,1.63e-07,1;CL:0000173,1.63e-07,1;CL:0002351,1.63e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.05e-12;29!UBERON:0008425;9.90e-08;1!CL:0002351;2.16e-07;1!UBERON:0006298;4.74e-07;1!UBERON:0006595;6.63e-07;86 | |||
|ontology_enrichment_disease=DOID:3493!3.34e-07!2 | |ontology_enrichment_disease=DOID:3493!3.34e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;1.56e-13;2!DOID:1325;3.43e-08;7!DOID:3904;3.43e-08;7!DOID:0050619;1.20e-07;1!DOID:1357;1.20e-07;1!DOID:4430;2.16e-07;1!DOID:5409;5.68e-07;4!DOID:3119;6.17e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.47e-13,2;DOID:1325,4.23e-08,7;DOID:3904,4.23e-08,7;DOID:0050619,1.12e-07,1;DOID:1357,1.12e-07,1;DOID:4430,1.63e-07,1;DOID:5409,5.86e-07,4;DOID:3119,6.74e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004921!2.16e-14!129;UBERON:0004185!2.16e-14!129;UBERON:0001007!2.26e-13!155;UBERON:0001555!2.26e-13!155;UBERON:0007026!2.26e-13!155;UBERON:0004119!3.06e-13!169;UBERON:0000925!3.06e-13!169;UBERON:0006595!3.06e-13!169;UBERON:0005409!2.89e-10!35;UBERON:0000077!4.97e-10!130;UBERON:0007023!1.13e-09!115;UBERON:0005153!2.32e-08!37;UBERON:0000160!5.45e-08!27;UBERON:0001041!4.09e-07!98;UBERON:0003127!6.12e-07!2;UBERON:0002048!6.95e-07!22;UBERON:0000117!6.95e-07!22;UBERON:0000171!6.95e-07!22;UBERON:0000170!6.95e-07!22;UBERON:0005597!6.95e-07!22;UBERON:0000118!6.95e-07!22;UBERON:0001004!7.19e-07!72 | |ontology_enrichment_uberon=UBERON:0004921!2.16e-14!129;UBERON:0004185!2.16e-14!129;UBERON:0001007!2.26e-13!155;UBERON:0001555!2.26e-13!155;UBERON:0007026!2.26e-13!155;UBERON:0004119!3.06e-13!169;UBERON:0000925!3.06e-13!169;UBERON:0006595!3.06e-13!169;UBERON:0005409!2.89e-10!35;UBERON:0000077!4.97e-10!130;UBERON:0007023!1.13e-09!115;UBERON:0005153!2.32e-08!37;UBERON:0000160!5.45e-08!27;UBERON:0001041!4.09e-07!98;UBERON:0003127!6.12e-07!2;UBERON:0002048!6.95e-07!22;UBERON:0000117!6.95e-07!22;UBERON:0000171!6.95e-07!22;UBERON:0000170!6.95e-07!22;UBERON:0005597!6.95e-07!22;UBERON:0000118!6.95e-07!22;UBERON:0001004!7.19e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.86e-19;22!UBERON:0002108;6.25e-19;4!UBERON:0004921;1.99e-16;33!UBERON:0003127;4.14e-13;2!UBERON:0000945;2.21e-11;5!UBERON:0010039;2.21e-11;5!UBERON:0000160;3.32e-11;17!UBERON:0001041;2.41e-10;14!UBERON:0002048;2.47e-09;22!UBERON:0000117;2.47e-09;22!UBERON:0000171;2.47e-09;22!UBERON:0000170;2.47e-09;22!UBERON:0002114;6.45e-09;2!UBERON:0005178;5.75e-08;34!UBERON:0002224;5.75e-08;34!UBERON:0002171;1.20e-07;1!UBERON:0001764;1.20e-07;1!UBERON:0001825;1.20e-07;1!UBERON:0006518;1.20e-07;1!UBERON:0008949;1.20e-07;1!UBERON:0000101;1.20e-07;1!UBERON:0002167;1.20e-07;1!UBERON:0005181;2.04e-07;35!UBERON:0001736;4.74e-07;1!UBERON:0001301;4.74e-07;1!UBERON:0004913;4.74e-07;1!UBERON:0003703;4.74e-07;1!UBERON:0001174;4.74e-07;1!UBERON:0004914;4.74e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.35e-18,4;UBERON:0004921,1.72e-17,118;UBERON:0005409,7.88e-17,25;UBERON:0001007,5.83e-15,145;UBERON:0001555,5.83e-15,145;UBERON:0007026,5.83e-15,145;UBERON:0004119,3.85e-13,160;UBERON:0000925,3.85e-13,160;UBERON:0006595,3.85e-13,160;UBERON:0003127,5.28e-13,2;UBERON:0005153,9.94e-12,37;UBERON:0000160,3.83e-11,17;UBERON:0001041,1.76e-10,87;UBERON:0005178,4.13e-10,34;UBERON:0002224,4.13e-10,34;UBERON:0005181,8.69e-10,35;UBERON:0002048,2.67e-09,22;UBERON:0000117,2.67e-09,22;UBERON:0000171,2.67e-09,22;UBERON:0000170,2.67e-09,22;UBERON:0005597,2.67e-09,22;UBERON:0000118,2.67e-09,22;UBERON:0011216,5.15e-09,223;UBERON:0008947,6.39e-09,38;UBERON:0003258,6.39e-09,38;UBERON:0005157,6.45e-09,47;UBERON:0002114,8.36e-09,2;UBERON:0000915,6.55e-08,52;UBERON:0001004,1.01e-07,74;UBERON:0001764,1.12e-07,1;UBERON:0001825,1.12e-07,1;UBERON:0002171,1.27e-07,1;UBERON:0006518,1.27e-07,1;UBERON:0008949,1.27e-07,1;UBERON:0000101,1.27e-07,1;UBERON:0002167,1.27e-07,1;UBERON:0000945,2.67e-07,8;UBERON:0010039,2.67e-07,8;UBERON:0001736,3.02e-07,1;UBERON:0006298,3.02e-07,1;UBERON:0001301,5.50e-07,1;UBERON:0004913,6.97e-07,1;UBERON:0003703,6.97e-07,1;UBERON:0001174,6.97e-07,1;UBERON:0004914,6.97e-07,1 | |||
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| ||
|short_description=p3@ARHGEF38 | |short_description=p3@ARHGEF38 | ||
}} | }} |
Latest revision as of 06:38, 20 September 2015
Short description: | p3@ARHGEF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGEF38_5end |
Coexpression cluster: | C2767_lung_breast_maxillary_pituitary_signet_temporal_gastric |
Association with transcript: | 27bp_to_ENST00000420470_5end |
EntrezGene: | ARHGEF38 |
HGNC: | 25968 |
UniProt: | C9JIB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 3.92e-09 | 3 |
peptide hormone secreting cell | 1.63e-07 | 1 |
enteroendocrine cell | 1.63e-07 | 1 |
type D enteroendocrine cell | 1.63e-07 | 1 |
somatostatin secreting cell | 1.63e-07 | 1 |
pancreatic D cell | 1.63e-07 | 1 |
progenitor cell of endocrine pancreas | 1.63e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.47e-13 | 2 |
bronchus cancer | 4.23e-08 | 7 |
bronchogenic carcinoma | 4.23e-08 | 7 |
paranasal sinus cancer | 1.12e-07 | 1 |
maxillary sinus cancer | 1.12e-07 | 1 |
somatostatinoma | 1.63e-07 | 1 |
lung small cell carcinoma | 5.86e-07 | 4 |
gastrointestinal system cancer | 6.74e-07 | 14 |