FFCP PHASE1:Hg19::chr2:21225326..21225346,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=P04114 | |UniProt=P04114 | ||
|association_with_transcript=294bp_to_M36676_5end | |association_with_transcript=294bp_to_M36676_5end | ||
|cluster_id=chr2:21225326..21225346,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_APOB_5end | |description=CAGE_peak_3_at_APOB_5end | ||
|id=chr2:21225326..21225346,- | |id=chr2:21225326..21225346,- | ||
|ontology_enrichment_celltype=CL:0000181!1.35e-30!12;CL:0000417!1.35e-30!12;CL:0000668!1.35e-30!12;CL:0000414!1.35e-30!12;CL:0000412!1.35e-30!12;CL:0000182!1.35e-30!12;CL:0000223!1.50e-13!59;CL:0002561!1.32e-08!1;CL:0002563!2.40e-08!4 | |ontology_enrichment_celltype=CL:0000181!1.35e-30!12;CL:0000417!1.35e-30!12;CL:0000668!1.35e-30!12;CL:0000414!1.35e-30!12;CL:0000412!1.35e-30!12;CL:0000182!1.35e-30!12;CL:0000223!1.50e-13!59;CL:0002561!1.32e-08!1;CL:0002563!2.40e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.14e-40;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.14e-40,12;CL:0000223,8.20e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.06e-20;11!UBERON:0009497;7.14e-17;13!CL:0000223;3.00e-08;58!UBERON:0001041;1.90e-07;30!UBERON:0003104;3.68e-07;31 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!8.59e-25!19;UBERON:0006925!8.59e-25!19;UBERON:0008836!8.59e-25!19;UBERON:0008835!2.89e-21!22;UBERON:0003894!2.89e-21!22;UBERON:0009854!2.71e-20!23;UBERON:0007499!1.39e-18!25;UBERON:0009497!1.39e-18!25;UBERON:0000015!1.39e-18!25;UBERON:0002423!1.39e-18!25;UBERON:0006235!1.39e-18!25;UBERON:0004161!1.39e-18!25;UBERON:0002365!1.59e-18!31;UBERON:0002330!1.59e-18!31;UBERON:0005057!7.96e-18!26;UBERON:0009856!7.96e-18!26;UBERON:0003929!4.28e-15!54;UBERON:0004921!1.59e-13!129;UBERON:0004185!1.59e-13!129;UBERON:0002368!5.90e-13!35;UBERON:0000160!2.69e-12!27;UBERON:0002530!3.31e-11!59;UBERON:0001007!9.87e-11!155;UBERON:0001555!9.87e-11!155;UBERON:0007026!9.87e-11!155;UBERON:0000949!7.96e-10!45;UBERON:0004119!1.39e-09!169;UBERON:0000925!1.39e-09!169;UBERON:0006595!1.39e-09!169;UBERON:0005409!2.19e-09!35;UBERON:0005911!2.76e-09!82;UBERON:0007195!9.02e-09!1;UBERON:0005933!1.32e-08!1;UBERON:0005942!1.32e-08!1;UBERON:0005932!1.32e-08!1;UBERON:0001242!2.40e-08!4;UBERON:0001262!2.40e-08!4;UBERON:0004786!2.40e-08!4;UBERON:0004808!2.40e-08!4;UBERON:0001277!2.40e-08!4;UBERON:0001155!6.08e-08!9;UBERON:0005172!7.81e-08!55;UBERON:0005173!7.81e-08!55;UBERON:0002417!5.94e-07!61;UBERON:0000916!5.94e-07!61;UBERON:0003350!7.70e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.62e-34;19!UBERON:0006925;3.62e-34;19!UBERON:0002423;7.12e-26;25!UBERON:0002108;2.47e-24;4!UBERON:0002365;2.24e-20;31!UBERON:0002330;2.24e-20;31!UBERON:0000160;3.56e-18;17!UBERON:0002368;3.23e-17;33!UBERON:0007195;2.94e-14;1!UBERON:0005409;3.11e-14;22!UBERON:0000949;6.46e-14;43!UBERON:0001007;1.65e-12;81!UBERON:0004921;1.94e-08;33!UBERON:0005172;4.49e-08;52!UBERON:0005173;4.49e-08;52!UBERON:0002530;2.29e-07;57!UBERON:0002417;6.97e-07;58!UBERON:0000916;6.97e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.62e-34,19;UBERON:0006925,3.62e-34,19;UBERON:0008836,3.62e-34,19;UBERON:0008835,1.86e-29,22;UBERON:0003894,1.86e-29,22;UBERON:0009854,3.69e-28,23;UBERON:0007499,7.12e-26,25;UBERON:0009497,7.12e-26,25;UBERON:0000015,7.12e-26,25;UBERON:0002423,7.12e-26,25;UBERON:0006235,7.12e-26,25;UBERON:0004161,7.12e-26,25;UBERON:0009856,7.30e-25,26;UBERON:0002108,2.47e-24,4;UBERON:0002365,8.80e-21,31;UBERON:0002330,8.80e-21,31;UBERON:0002368,2.36e-18,35;UBERON:0000160,3.56e-18,17;UBERON:0003929,3.73e-15,54;UBERON:0004921,9.40e-15,118;UBERON:0007195,3.15e-14,1;UBERON:0000949,3.66e-14,45;UBERON:0005409,1.36e-12,25;UBERON:0001007,9.17e-12,145;UBERON:0001555,9.17e-12,145;UBERON:0007026,9.17e-12,145;UBERON:0005172,1.03e-11,54;UBERON:0005173,1.03e-11,54;UBERON:0002530,1.13e-10,59;UBERON:0004119,1.56e-10,160;UBERON:0000925,1.56e-10,160;UBERON:0006595,1.56e-10,160;UBERON:0002417,1.74e-10,60;UBERON:0000916,1.74e-10,60;UBERON:0005911,1.02e-09,82;UBERON:0001041,4.80e-07,87;UBERON:0011216,4.97e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,100.136477509246,34.3989525837169,11.2250082269467,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22468147755661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,2.12298154808014,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,18.7503973891192,16.4831716762333,16.4464647004211,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4828054983836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,8.41198323376597,6.33822725461476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0,0.50141507858475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,100.136477509246,34.3989525837169,11.2250082269467,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22468147755661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,2.12298154808014,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,18.7503973891192,16.4831716762333,16.4464647004211,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4828054983836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,8.41198323376597,6.33822725461476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0,0.50141507858475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@APOB | |short_description=p3@APOB | ||
}} | }} |
Latest revision as of 22:51, 19 September 2015
Short description: | p3@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 294bp_to_M36676_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.14e-40 | 12 |
endodermal cell | 8.20e-11 | 58 |