FFCP PHASE1:Hg19::chr17:37894179..37894202,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2886 | |EntrezGene=2886 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4567 | |HGNC=4567 | ||
|TSSclassifier=strong | |||
|UniProt=Q14451 | |UniProt=Q14451 | ||
|association_with_transcript=0bp_to_ENST00000309156,ENST00000309185,ENST00000485182,uc002hsr.2_5end | |association_with_transcript=0bp_to_ENST00000309156,ENST00000309185,ENST00000485182,uc002hsr.2_5end | ||
|cluster_id=chr17:37894179..37894202,+ | |||
|coexpression_cluster_id=C3629 | |||
|description=CAGE_peak_3_at_GRB7_5end | |description=CAGE_peak_3_at_GRB7_5end | ||
|id=chr17:37894179..37894202,+ | |id=chr17:37894179..37894202,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.47e-37!254;CL:0000223!7.72e-16!59;CL:0002076!2.68e-15!43;CL:0002251!2.07e-08!21 | |ontology_enrichment_celltype=CL:0000066!1.47e-37!254;CL:0000223!7.72e-16!59;CL:0002076!2.68e-15!43;CL:0002251!2.07e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.16e-14;42!CL:0002251;1.70e-10;20!CL:1000507;1.03e-08;10!CL:1000494;1.03e-08;10!CL:0000039;4.16e-08;7!CL:0000586;4.16e-08;7!CL:1000497;1.36e-07;17!CL:0002518;1.36e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.04e-42,253;CL:0000223,1.88e-19,58;CL:0002076,8.31e-19,42;CL:0002251,1.14e-10,20;CL:1000507,1.15e-08,10;CL:1000494,1.15e-08,10;CL:0000039,4.01e-08,7;CL:0000586,4.01e-08,7;CL:1000497,1.37e-07,17;CL:0002518,1.37e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;4.60e-10;58!UBERON:0006595;2.73e-09;86!UBERON:0001041;3.97e-09;30 | |||
|ontology_enrichment_disease=DOID:305!1.38e-29!106;DOID:0050687!1.52e-20!143;DOID:299!7.51e-11!25;DOID:1749!4.47e-08!14;DOID:162!8.16e-08!235;DOID:14566!1.47e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:299;2.58e-12;25!DOID:305;3.13e-11;106!DOID:1749;6.81e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.64e-33,106;DOID:0050687,8.77e-24,143;DOID:299,1.89e-12,25;DOID:1749,6.35e-11,14;DOID:162,4.15e-09,235;DOID:14566,1.79e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.22e-24!169;UBERON:0000925!3.22e-24!169;UBERON:0006595!3.22e-24!169;UBERON:0001007!1.19e-20!155;UBERON:0001555!1.19e-20!155;UBERON:0007026!1.19e-20!155;UBERON:0004921!4.92e-19!129;UBERON:0004185!4.92e-19!129;UBERON:0000077!1.21e-17!130;UBERON:0000466!7.14e-16!126;UBERON:0000464!2.81e-15!104;UBERON:0001041!8.31e-14!98;UBERON:0000062!8.42e-14!511;UBERON:0000481!1.06e-12!347;UBERON:0001004!2.28e-12!72;UBERON:0005177!5.49e-12!107;UBERON:0000064!8.76e-12!219;UBERON:0001048!1.26e-10!168;UBERON:0002553!6.43e-10!70;UBERON:0000065!8.73e-10!53;UBERON:0001008!1.48e-09!45;UBERON:0005911!2.08e-09!82;UBERON:0006554!2.65e-09!44;UBERON:0000922!3.42e-09!612;UBERON:0000468!6.88e-09!659;UBERON:0005156!1.04e-08!59;UBERON:0000990!1.04e-08!59;UBERON:0003104!1.32e-08!238;UBERON:0009142!1.32e-08!238;UBERON:0008947!2.28e-08!38;UBERON:0003258!2.28e-08!38;UBERON:0003133!3.39e-08!48;UBERON:0009569!3.67e-08!113;UBERON:0003886!5.68e-08!63;UBERON:0005153!1.55e-07!37;UBERON:0000072!1.67e-07!46;UBERON:0002050!2.62e-07!605;UBERON:0005423!2.62e-07!605;UBERON:0000161!2.66e-07!35;UBERON:0000923!4.18e-07!604;UBERON:0005291!4.18e-07!604;UBERON:0006598!4.18e-07!604;UBERON:0002532!4.18e-07!604;UBERON:0000160!4.31e-07!27;UBERON:0005409!4.75e-07!35;UBERON:0000344!5.52e-07!12;UBERON:0000467!5.83e-07!625;UBERON:0000480!7.67e-07!626;UBERON:0003064!8.59e-07!37;UBERON:0004175!9.39e-07!25;UBERON:0002113!9.58e-07!27;UBERON:0003918!9.58e-07!27;UBERON:0005095!9.58e-07!27;UBERON:0007687!9.58e-07!27;UBERON:0000058!9.80e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.29e-09;30!UBERON:0001008;1.29e-09;30!UBERON:0004921;4.59e-09;33!UBERON:0004211;1.03e-08;10!UBERON:0009773;1.03e-08;10!UBERON:0001231;1.03e-08;10!UBERON:0004810;1.03e-08;10!UBERON:0005178;1.70e-07;34!UBERON:0002224;1.70e-07;34!UBERON:0005181;7.40e-07;35!UBERON:0000344;7.55e-07;20!UBERON:0005911;8.56e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.52e-22,160;UBERON:0000925,3.52e-22,160;UBERON:0006595,3.52e-22,160;UBERON:0001007,2.16e-18,145;UBERON:0001555,2.16e-18,145;UBERON:0007026,2.16e-18,145;UBERON:0004921,4.69e-18,118;UBERON:0005177,1.03e-16,101;UBERON:0001008,5.18e-13,48;UBERON:0006554,1.16e-12,47;UBERON:0001041,6.93e-12,87;UBERON:0001004,1.46e-11,74;UBERON:0009569,1.02e-10,112;UBERON:0005911,2.37e-10,82;UBERON:0005153,1.61e-09,37;UBERON:0000065,9.38e-09,54;UBERON:0000161,1.06e-08,36;UBERON:0004810,1.15e-08,10;UBERON:0005178,1.67e-08,34;UBERON:0002224,1.67e-08,34;UBERON:0005181,4.44e-08,35;UBERON:0005157,9.37e-08,47;UBERON:0008947,9.92e-08,38;UBERON:0003258,9.92e-08,38;UBERON:0002113,1.23e-07,26;UBERON:0003918,1.23e-07,26;UBERON:0011143,1.23e-07,26;UBERON:0005095,1.23e-07,26;UBERON:0007687,1.23e-07,26;UBERON:0000489,1.91e-07,31;UBERON:0005156,2.26e-07,59;UBERON:0000990,2.26e-07,59;UBERON:0000344,6.48e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,4.88460817580699,2.18441372130172,2.90143676051299,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0.940364164434263,0,0.273748850145768,0.376627918784408,0.0764134057479513,0,0,0,0,0.309632246632152,1.83884244895785,2.10844143144775,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756278537312543,0,0.790513071238134,2.81605012320082,5.46442932438813,6.3033355273353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,4.36094052142534,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0.151357427644931,0,0,0,0.570471821544449,0,0.23486899728753,0.161872944368132,0,0,0.491337269247072,0,0,0,0,0.718618141816238,0.505008341862199,0.500474079487857,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,3.67195621010264,2.72746120590835,4.01526433544605,7.44039607390532,4.5060121229305,3.71820617182459,4.04278114559945,6.81266297364197,2.91981887260664,0,0.643240938192885,0,0,0,1.30137480043828,1.34867752062481,0.723033089650446,0.882351781859152,0.435758888184812,0.237270619111097,1.34831308160164,1.96221465125346,0.38474715694639,0,0,0.8231480226628,0,0,0,0.590789906681404,0,5.28850285735388,0.514703430895577,2.30475599358114,5.62008766288098,3.82010095164197,7.03672183204825,0,0,0,0.695582429850461,0,0.144366447761074,0,0,4.74122638775565,3.43394464837949,0,0,0,0,1.17587489739202,2.41017665312057,2.23896306757121,2.3250715081117,4.60059214998253,0,0,0,0.288239906833923,0.37872730027914,0.063497894292169,0,0,0,0,0.300343057843917,0,0.672786506072164,0.43596006883328,0,0,0,0,0,0,0.771622122786426,0,0.532844358032199,0,0,0,0,0,1.58390374586686,2.1100756394171,1.74306691720059,2.19940580600526,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0,0,0.195801157462741,0,0,0,0,0.606255142892519,1.66435439510497,2.72151263996712,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0,4.23008073570678,1.40354529212299,5.24861636934609,0,0.182091168006717,0,4.06079651616671,4.77495090047372,15.6869953835371,5.84556898613043,5.06647818685803,0,0,0.647747748306418,0,4.06419656315779,11.5388647986616,4.84264918785573,0.831076008928724,9.17886494360931,0,0,2.56450125116389,2.29610251989794,3.25378394664303,4.84292754744295,0,0.082509499920588,0.574265537996172,1.95018073810956,0,0,0.308097234229289,0,0,0,0.145016693914229,0,0,1.81813406897076,1.53752053892085,2.80747967488085,2.12431339796655,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0.354761064070598,0.211107635297664,0,0,0.349934720244983,2.79044126903985,3.35151137767894,6.53345909167936,5.36619664427641,1.72202149068492,1.68471475667626,3.10401107475673,3.44585100310439,0,0,0,0,0,0,0,0,0.427296284509893,0.962479855263359,5.63592496756373,0.743212700502875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92995134857262,0.293016358543788,0,0,0,1.67121139316383,2.96964680832639,2.45728561679386,0,0,0,0,0,0.398495976502139,1.10513566212459,2.01546198283421,0,0,0,2.60618218327248,1.43216939740487,0,2.26879832964947,0,0,0.969332746095218,0.371072392647405,1.99613798001194,1.30213880542617,14.7807399993571,1.44999915086959,2.16207551742449,7.62760950878299,4.72775363535873,1.03423011972439,0.874813840149763,0,0,0.120596438625408,0,3.42795705786796,2.06883333267483,0.658156191461918,0,7.25003470248737,2.6163087891291,0,3.4584585658209,6.55230804191337,3.91130538919229,1.91400695839152,3.93869651628008,3.73124343213044,0,0,0,1.80476528493745,0.19606253431774,0.839107934879214,0,0,6.75193806489686,44.236091011129,6.9263005002631,0.216388639742091,4.97630965539252,4.86516604768365,5.49927130440263,0,0,0,0.067401132980677,0,0.234264445725339,0,10.7615540412649,0.485560759068186,7.49710365413842,4.83962864194656,0,0,0,0,0.664653872707185,1.98595173525299,1.56966459203613,1.19472429772959,4.83836228250648,0,3.12407529003236,8.91730816470837,4.17884191585932,2.27144668714639,0.343972064943233,0.967563312890852,1.46178634172371,1.14961639874493,19.5917813306607,0.353024506766001,1.80784592624426,0,0,0.126621591911757,5.67099009930929,0.961905843018405,5.76323085796252,1.59847687665704,3.16998917739033,0,0,2.73704116177484,0,4.24249262310232,0,0.104602846312333,0,0,0,0,0,0.859530882839914,0,0.279282401272254,0.687481272035051,0,2.59582700648688,0.858452096273142,0.223171457441873,0.335917362433631,0,1.16495949527454,10.556946429168,11.7030518901256,11.0541811920863,3.05125192695721,0,0,0.136203406111576,3.05430982083536,4.26372253451425,7.47792608452533,0.449947783103001,11.6070293183692,0.0607495566580247,7.04412843958459,6.30445658393585,10.2286446863246,0,0,3.83830394638891,0,1.32418394073086,0,0,0.8642214912012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| ||
|short_description=p3@GRB7 | |short_description=p3@GRB7 | ||
}} | }} |
Latest revision as of 22:42, 19 September 2015
Short description: | p3@GRB7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRB7_5end |
Coexpression cluster: | C3629_clear_serous_papillotubular_testicular_signet_breast_esophagus |
Association with transcript: | 0bp_to_ENST00000309156, ENST00000309185, ENST00000485182, uc002hsr.2_5end |
EntrezGene: | GRB7 |
HGNC: | 4567 |
UniProt: | Q14451 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.04e-42 | 253 |
endodermal cell | 1.88e-19 | 58 |
endo-epithelial cell | 8.31e-19 | 42 |
epithelial cell of alimentary canal | 1.14e-10 | 20 |
kidney tubule cell | 1.15e-08 | 10 |
nephron tubule epithelial cell | 1.15e-08 | 10 |
germ line cell | 4.01e-08 | 7 |
germ cell | 4.01e-08 | 7 |
kidney cell | 1.37e-07 | 17 |
kidney epithelial cell | 1.37e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.52e-22 | 160 |
endoderm | 3.52e-22 | 160 |
presumptive endoderm | 3.52e-22 | 160 |
digestive system | 2.16e-18 | 145 |
digestive tract | 2.16e-18 | 145 |
primitive gut | 2.16e-18 | 145 |
subdivision of digestive tract | 4.69e-18 | 118 |
trunk region element | 1.03e-16 | 101 |
renal system | 5.18e-13 | 48 |
urinary system structure | 1.16e-12 | 47 |
foregut | 6.93e-12 | 87 |
respiratory system | 1.46e-11 | 74 |
subdivision of trunk | 1.02e-10 | 112 |
endo-epithelium | 2.37e-10 | 82 |
epithelial bud | 1.61e-09 | 37 |
respiratory tract | 9.38e-09 | 54 |
orifice | 1.06e-08 | 36 |
nephron tubule epithelium | 1.15e-08 | 10 |
thoracic cavity element | 1.67e-08 | 34 |
thoracic cavity | 1.67e-08 | 34 |
thoracic segment organ | 4.44e-08 | 35 |
epithelial fold | 9.37e-08 | 47 |
respiratory primordium | 9.92e-08 | 38 |
endoderm of foregut | 9.92e-08 | 38 |
kidney | 1.23e-07 | 26 |
kidney mesenchyme | 1.23e-07 | 26 |
upper urinary tract | 1.23e-07 | 26 |
kidney rudiment | 1.23e-07 | 26 |
kidney field | 1.23e-07 | 26 |
cavitated compound organ | 1.91e-07 | 31 |
reproductive structure | 2.26e-07 | 59 |
reproductive system | 2.26e-07 | 59 |
mucosa | 6.48e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.64e-33 | 106 |
cell type cancer | 8.77e-24 | 143 |
adenocarcinoma | 1.89e-12 | 25 |
squamous cell carcinoma | 6.35e-11 | 14 |
cancer | 4.15e-09 | 235 |
disease of cellular proliferation | 1.79e-08 | 239 |