FFCP PHASE1:Hg19::chr22:31739291..31739311,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:31739291..31739311,- to FFCP PHASE1:Hg19::chr22:31739291..31739311,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23598 | |EntrezGene=23598 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13071 | |HGNC=13071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000494109_5end | |||
|cluster_id=chr22:31739291..31739311,- | |||
|description=CAGE_peak_2_at_PATZ1_5end | |||
|id=chr22:31739291..31739311,- | |||
|ontology_enrichment_celltype=CL:0000540!8.04e-11!6;CL:0000031!8.04e-11!6;CL:0000404!8.04e-11!6;CL:0000047!1.86e-10!8;CL:0002319!2.57e-09!25;CL:0002322!2.90e-09!5;CL:0000133!3.73e-08!59;CL:1000507!1.14e-07!12;CL:1000494!1.14e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.99e-17;6!CL:0000404;1.99e-17;6!CL:0002319;2.26e-16;25!CL:0002322;5.47e-14;5!CL:1000507;7.01e-14;10!CL:1000494;7.01e-14;10!CL:0002605;6.01e-13;3!CL:1000449;4.68e-09;15!CL:1000497;6.40e-08;17!CL:0002518;6.40e-08;17!CL:0000147;2.68e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.00e-18,8;CL:0000540,8.60e-18,6;CL:0000031,8.60e-18,6;CL:0000404,8.60e-18,6;CL:0002319,1.66e-16,25;CL:0002322,6.95e-14,5;CL:1000507,1.15e-13,10;CL:1000494,1.15e-13,10;CL:0002605,2.98e-13,3;CL:0000133,6.59e-12,59;CL:0000221,3.09e-09,72;CL:1000449,6.44e-09,15;CL:1000497,8.45e-08,17;CL:0002518,8.45e-08,17;CL:0000147,2.49e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000031;1.99e-17;6!CL:0000133;1.20e-07;59 | |||
|ontology_enrichment_disease=DOID:5093!2.11e-07!4;DOID:1612!2.11e-07!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.42e-11!94;UBERON:0001016!3.42e-11!94;UBERON:0005743!7.81e-11!86;UBERON:0000058!1.41e-10!26;UBERON:0000489!2.34e-10!32;UBERON:0000924!3.10e-10!173;UBERON:0006601!3.10e-10!173;UBERON:0004121!3.31e-10!169;UBERON:0003056!1.32e-09!61;UBERON:0000153!4.07e-09!129;UBERON:0007811!4.07e-09!129;UBERON:0000966!8.69e-09!5;UBERON:0005388!8.69e-09!5;UBERON:0001802!8.69e-09!5;UBERON:0002113!1.02e-08!27;UBERON:0003918!1.02e-08!27;UBERON:0005095!1.02e-08!27;UBERON:0007687!1.02e-08!27;UBERON:0001456!1.36e-08!21;UBERON:0007625!1.63e-08!11;UBERON:0000019!3.20e-08!19;UBERON:0000047!3.20e-08!19;UBERON:0004088!3.20e-08!19;UBERON:0003072!3.20e-08!19;UBERON:0003071!3.20e-08!19;UBERON:0004128!3.20e-08!19;UBERON:0001017!3.76e-08!82;UBERON:0003075!4.29e-08!86;UBERON:0007284!4.29e-08!86;UBERON:0002346!4.85e-08!90;UBERON:0000970!1.13e-07!20;UBERON:0009773!1.14e-07!12;UBERON:0001231!1.14e-07!12;UBERON:0004810!1.14e-07!12;UBERON:0000475!1.44e-07!365;UBERON:0000020!1.49e-07!23;UBERON:0000033!1.50e-07!123;UBERON:0000468!2.14e-07!659;UBERON:0000080!2.14e-07!18;UBERON:0002120!2.14e-07!18;UBERON:0004875!2.14e-07!18;UBERON:0005721!2.14e-07!18;UBERON:0005754!2.14e-07!18;UBERON:0007297!2.14e-07!18;UBERON:0000922!2.81e-07!612;UBERON:0000464!3.07e-07!104;UBERON:0002104!3.50e-07!21;UBERON:0001032!4.08e-07!24;UBERON:0004456!4.08e-07!24;UBERON:0006554!4.23e-07!44;UBERON:0001008!7.65e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;7.01e-14;10!UBERON:0009773;7.01e-14;10!UBERON:0001231;7.01e-14;10!UBERON:0004810;7.01e-14;10!UBERON:0000966;2.75e-13;5!UBERON:0005388;2.75e-13;5!UBERON:0001802;2.75e-13;5!UBERON:0002113;1.38e-09;24!UBERON:0011143;1.38e-09;24!UBERON:0006555;4.68e-09;15!UBERON:0004819;4.68e-09;15!UBERON:0001285;4.68e-09;15!UBERON:0007684;4.68e-09;15!UBERON:0003127;5.54e-09;2!UBERON:0000489;1.01e-07;29!UBERON:0006554;2.01e-07;30!UBERON:0001008;2.01e-07;30!UBERON:0000019;3.31e-07;19!UBERON:0000047;3.31e-07;19!UBERON:0004088;3.31e-07;19!UBERON:0010230;3.31e-07;19!UBERON:0000970;8.16e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.15e-13,10;UBERON:0002113,4.08e-11,26;UBERON:0003918,4.08e-11,26;UBERON:0011143,4.08e-11,26;UBERON:0005095,4.08e-11,26;UBERON:0007687,4.08e-11,26;UBERON:0000966,4.58e-11,6;UBERON:0005388,4.58e-11,6;UBERON:0001802,4.58e-11,6;UBERON:0000489,4.53e-09,31;UBERON:0004211,6.44e-09,15;UBERON:0009773,6.44e-09,15;UBERON:0001231,6.44e-09,15;UBERON:0001285,6.44e-09,15;UBERON:0007684,6.44e-09,15;UBERON:0004208,6.44e-09,15;UBERON:0003127,6.55e-09,2;UBERON:0006555,2.53e-08,16;UBERON:0004819,2.53e-08,16;UBERON:0000019,8.65e-07,20;UBERON:0000047,8.65e-07,20;UBERON:0010312,8.65e-07,20;UBERON:0004088,8.65e-07,20;UBERON:0010230,8.65e-07,20;UBERON:0003072,8.65e-07,20;UBERON:0004128,8.65e-07,20;UBERON:0003071,8.65e-07,20 | |||
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| ||
|short_description=p2@PATZ1 | |||
}} | }} |
Latest revision as of 20:27, 19 September 2015
Short description: | p2@PATZ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PATZ1_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000494109_5end |
EntrezGene: | PATZ1 |
HGNC: | 13071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.00e-18 | 8 |
neuron | 8.60e-18 | 6 |
neuroblast | 8.60e-18 | 6 |
electrically signaling cell | 8.60e-18 | 6 |
neural cell | 1.66e-16 | 25 |
embryonic stem cell | 6.95e-14 | 5 |
kidney tubule cell | 1.15e-13 | 10 |
nephron tubule epithelial cell | 1.15e-13 | 10 |
astrocyte of the cerebral cortex | 2.98e-13 | 3 |
neurectodermal cell | 6.59e-12 | 59 |
ectodermal cell | 3.09e-09 | 72 |
epithelial cell of nephron | 6.44e-09 | 15 |
kidney cell | 8.45e-08 | 17 |
kidney epithelial cell | 8.45e-08 | 17 |
pigment cell | 2.49e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.15e-13 | 10 |
kidney | 4.08e-11 | 26 |
kidney mesenchyme | 4.08e-11 | 26 |
upper urinary tract | 4.08e-11 | 26 |
kidney rudiment | 4.08e-11 | 26 |
kidney field | 4.08e-11 | 26 |
retina | 4.58e-11 | 6 |
photoreceptor array | 4.58e-11 | 6 |
posterior segment of eyeball | 4.58e-11 | 6 |
cavitated compound organ | 4.53e-09 | 31 |
nephron epithelium | 6.44e-09 | 15 |
renal tubule | 6.44e-09 | 15 |
nephron tubule | 6.44e-09 | 15 |
nephron | 6.44e-09 | 15 |
uriniferous tubule | 6.44e-09 | 15 |
nephrogenic mesenchyme | 6.44e-09 | 15 |
open tracheal system trachea | 6.55e-09 | 2 |
excretory tube | 2.53e-08 | 16 |
kidney epithelium | 2.53e-08 | 16 |
camera-type eye | 8.65e-07 | 20 |
simple eye | 8.65e-07 | 20 |
immature eye | 8.65e-07 | 20 |
ocular region | 8.65e-07 | 20 |
eyeball of camera-type eye | 8.65e-07 | 20 |
optic cup | 8.65e-07 | 20 |
optic vesicle | 8.65e-07 | 20 |
eye primordium | 8.65e-07 | 20 |