FFCP PHASE1:Hg19::chr3:87040342..87040351,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389136 | |EntrezGene=389136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |HGNC=24327 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-73bp_to_ENST00000383698_5end | |association_with_transcript=-73bp_to_ENST00000383698_5end | ||
|cluster_id=chr3:87040342..87040351,- | |||
|coexpression_cluster_id=C1930 | |coexpression_cluster_id=C1930 | ||
|description=CAGE_peak_6_at_VGLL3_5end | |description=CAGE_peak_6_at_VGLL3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000057!1.00e-21!75;CL:0000055!1.27e-16!180;CL:0002620!3.94e-13!23;CL:0000136!8.30e-08!15 | |ontology_enrichment_celltype=CL:0000057!1.00e-21!75;CL:0000055!1.27e-16!180;CL:0002620!3.94e-13!23;CL:0000136!8.30e-08!15 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.12e-16;23!CL:0000349;3.68e-12;19!CL:0000057;1.67e-09;73!CL:0000134;3.57e-07;55!CL:0002320;4.59e-07;188!CL:0000723;5.36e-07;61 | |ontology_enrichment_celltype_v019=CL:0002620;1.12e-16;23!CL:0000349;3.68e-12;19!CL:0000057;1.67e-09;73!CL:0000134;3.57e-07;55!CL:0002320;4.59e-07;188!CL:0000723;5.36e-07;61 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.73e-26,76;CL:0002620,1.04e-16,23;CL:0000349,7.89e-12,19;CL:0000048,3.73e-08,427;CL:0000723,1.25e-07,433;CL:0000034,5.76e-07,441;CL:0000136,6.61e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;8.02e-07;5!DOID:450;8.02e-07;5!DOID:66;8.02e-07;5!DOID:423;8.02e-07;5!DOID:0080000;8.02e-07;5!DOID:11722;8.02e-07;5 | |ontology_enrichment_disease_v019=DOID:17;8.02e-07;5!DOID:450;8.02e-07;5!DOID:66;8.02e-07;5!DOID:423;8.02e-07;5!DOID:0080000;8.02e-07;5!DOID:11722;8.02e-07;5 | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!5.30e-13!95;UBERON:0000478!8.89e-12!24;UBERON:0004923!2.04e-10!57;UBERON:0005631!5.00e-09!14;UBERON:0000158!5.00e-09!14;UBERON:0002199!5.95e-09!45;UBERON:0002416!5.95e-09!45;UBERON:0004119!4.46e-08!169;UBERON:0000925!4.46e-08!169;UBERON:0006595!4.46e-08!169;UBERON:0002097!2.39e-07!40;UBERON:0003104!3.33e-07!238;UBERON:0009142!3.33e-07!238;UBERON:0000914!3.56e-07!83;UBERON:0002329!3.56e-07!83;UBERON:0003077!3.56e-07!83;UBERON:0003059!3.56e-07!83;UBERON:0007282!3.56e-07!83;UBERON:0009618!3.56e-07!83;UBERON:0007285!3.56e-07!83;UBERON:0000475!9.01e-07!365 | |ontology_enrichment_uberon=UBERON:0003102!5.30e-13!95;UBERON:0000478!8.89e-12!24;UBERON:0004923!2.04e-10!57;UBERON:0005631!5.00e-09!14;UBERON:0000158!5.00e-09!14;UBERON:0002199!5.95e-09!45;UBERON:0002416!5.95e-09!45;UBERON:0004119!4.46e-08!169;UBERON:0000925!4.46e-08!169;UBERON:0006595!4.46e-08!169;UBERON:0002097!2.39e-07!40;UBERON:0003104!3.33e-07!238;UBERON:0009142!3.33e-07!238;UBERON:0000914!3.56e-07!83;UBERON:0002329!3.56e-07!83;UBERON:0003077!3.56e-07!83;UBERON:0003059!3.56e-07!83;UBERON:0007282!3.56e-07!83;UBERON:0009618!3.56e-07!83;UBERON:0007285!3.56e-07!83;UBERON:0000475!9.01e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;9.27e-12;24!UBERON:0005631;1.08e-08;10!UBERON:0000158;1.08e-08;10!UBERON:0002199;1.13e-08;46!UBERON:0002416;1.13e-08;46!UBERON:0002097;1.59e-08;41!UBERON:0004457;2.27e-07;9!UBERON:0000042;2.27e-07;9!UBERON:0003102;4.54e-07;50!UBERON:0002384;7.30e-07;198!UBERON:0004905;8.87e-07;8!UBERON:0000982;8.87e-07;8!UBERON:0004770;8.87e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0000478;9.27e-12;24!UBERON:0005631;1.08e-08;10!UBERON:0000158;1.08e-08;10!UBERON:0002199;1.13e-08;46!UBERON:0002416;1.13e-08;46!UBERON:0002097;1.59e-08;41!UBERON:0004457;2.27e-07;9!UBERON:0000042;2.27e-07;9!UBERON:0003102;4.54e-07;50!UBERON:0002384;7.30e-07;198!UBERON:0004905;8.87e-07;8!UBERON:0000982;8.87e-07;8!UBERON:0004770;8.87e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.10e-12,46;UBERON:0002416,1.10e-12,46;UBERON:0005631,9.26e-12,14;UBERON:0000158,9.26e-12,14;UBERON:0002097,1.30e-11,41;UBERON:0000478,1.79e-11,24;UBERON:0003102,2.42e-11,99;UBERON:0004923,1.24e-10,66;UBERON:0003124,4.19e-08,7;UBERON:0002384,5.34e-07,371;UBERON:0000486,6.95e-07,83 | |||
|phase1_expression=2.90685406832891,2.99740733447376,2.39622486963151,5.00366491765652,2.23480547213644,2.61701557230111,5.06599756336621,0.631719873426831,0.783556884599516,1.72013755551056,0.697801167972428,3.05817920982241,2.11013582582763,1.11389717664042,3.64537113300707,0.672325146451775,0,0,0.487932798790507,0.123121058076788,0.612002073732759,0.313454721478088,0.286235987131057,0.410623275218653,0.87879847716362,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,2.17366355134002,0.722878304769133,0.50133791063589,0.144846518960824,0,0,0.661743720148475,1.33037638477538,1.40535657109002,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,2.98183171017191,0.506522046658319,0.794455084879313,0.286836620748814,1.41867352879343,1.12135520028461,0,0,2.17847724779836,1.21239604862719,0.326923806226917,0.454072282934794,0.576175924479999,0.70296429550139,2.18512053781224,1.1409436430889,2.69007624993242,2.58355897016283,0.971237666208789,1.82586048712923,1.63323337003915,1.22834317311768,4.23635702820638,2.37600571456411,5.43987244412825,1.82032272387605,3.59309070908119,0.673344455816265,1.87677779807946,4.71008996323111,4.38977620880838,3.37136575378922,2.70428506031874,0.907457465280168,3.04962380671065,3.84403299873421,3.17897851739343,3.00091096084402,5.25567899116038,2.83404594050192,2.60563598864226,0.843881661206331,2.24105111870757,2.27190396819703,4.23429533754577,3.07127507955743,2.4850671476163,1.81353776809752,1.52604533079439,0,0,0.573609190778008,0,0.265059536642971,0.232387885739037,0,0,0.36497735907583,0,2.57296375277154,0,2.3218396401599,3.60939740834793,0.828147600278907,1.01150814046861,1.20505514941741,1.10293972732394,0.653638332277218,1.42362371466658,0.539325232640658,0.196221465125346,1.53898862778556,0,1.40241773803446,1.2347220339942,4.41026134156626,0,0,0,0,0.737930631258681,0.514703430895577,0.219500570817251,0,0,0.370353780634118,1.62904152655162,0,0,0.115930404975077,1.99594780200897,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.448524337381443,1.74384027533312,0.8800594298514,0.129271715757778,3.57656445851882,1.690605505112,0.797814349754612,1.04007436911366,0.514414748524284,2.83698264046557,0.532844358032199,1.42977993658148,0.542621605391443,3.29296134712308,0.977208552881205,0.355391948742546,1.58390374586686,1.20575750823834,0,0.899756920638513,0,0,0,2.15662369942424,3.44585807502342,0,1.59259437334337,1.84928690295345,2.50685348535854,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,3.43536176813592,2.00068208423871,3.52644530809656,1.66376689224646,2.67643483195743,1.73472656537328,3.98280810975225,1.80567659836631,0,2.0694614258501,1.99267679560631,0.921845842708516,3.0409265063829,0.195801157462741,1.71571711905428,0,0,0,1.81876542867756,3.32870879020994,2.41912234663744,1.98486246255021,1.07423381301644,2.80660094433074,2.69092213436972,2.55853624533352,1.28683136914886,0,2.7757744884478,1.59805552781814,0.657017248110473,0,1.97557643381931,0.241718899183244,0.802025881213139,0.0920809889358963,0.68888668898764,0.546273504020151,1.18011973463482,0,0.616122696835318,0,0,0.316654886678627,0,0,0.215915916102139,0,0.541892875087706,0,0,0,0.223874754722178,0,0,0,0,0,1.75169719801128,0,0,0,0,0,0.870036464629098,2.46477787383431,3.53058451870098,2.75673144969061,4.94133126394059,4.64053420525531,2.47157219506693,1.33548053470106,0.165284915360978,0.576570202095319,0.255225424989168,0.30347334256665,1.39453664789186,0.62962469366128,0.6970372701606,0,0,0,0,0,0,2.53103539774981,4.00323407240032,0.255897791311334,1.71175595213568,0.636406495851874,0.78494864019923,4.13706652441624,4.66712950551293,3.29874726567922,0,0,0,0.975267478179181,0,1.05650146756755,1.36499911407986,0.424216295861138,0,1.10273068709225,0,0,1.15755106853338,5.24715801637306,0,0.30982349809975,0,1.86434757865267,2.06322986127554,0,0,4.22215270595328,3.95153871551882,0.75894634753143,1.04980416073495,0.192444225451024,0,0,1.69458841398202,0.86101074534246,1.68471475667626,0.886860307073351,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,1.22587722705226,0,3.81991175580304,2.37571744666111,6.14321404198464,0,0,0.556543525114529,0.659215496907038,0,1.39473591775749,0,0,0,0,3.11039587661807,0.0898683511473268,0.358042349351218,0,1.67693789582787,0,6.66821940867821,0,0,0,0,0,0,0,0.254253650292766,2.83665218121524,0,0,0.173624994933292,2.65722415744152,0,0,0,0,0,0,0.41827123283581,1.30815439456455,1.13942055847001,1.61394733071642,0.269272933229316,0.108647371922008,5.10401855571071,2.01514705484097,4.79731298416771,0,0.31396051279005,0,0,0,0,0,0,0,0,0.4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| ||
|short_description=p6@VGLL3 | |short_description=p6@VGLL3 | ||
}} | }} |
Latest revision as of 18:28, 19 September 2015
Short description: | p6@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VGLL3_5end |
Coexpression cluster: | C1930_placenta_Fibroblast_amniotic_chorionic_bronchogenic_Hair_bone |
Association with transcript: | -73bp_to_ENST00000383698_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.73e-26 | 76 |
skin fibroblast | 1.04e-16 | 23 |
extraembryonic cell | 7.89e-12 | 19 |
multi fate stem cell | 3.73e-08 | 427 |
somatic stem cell | 1.25e-07 | 433 |
stem cell | 5.76e-07 | 441 |
fat cell | 6.61e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
integument | 1.10e-12 | 46 |
integumental system | 1.10e-12 | 46 |
extraembryonic membrane | 9.26e-12 | 14 |
membranous layer | 9.26e-12 | 14 |
skin of body | 1.30e-11 | 41 |
extraembryonic structure | 1.79e-11 | 24 |
surface structure | 2.42e-11 | 99 |
organ component layer | 1.24e-10 | 66 |
chorion | 4.19e-08 | 7 |
connective tissue | 5.34e-07 | 371 |
multilaminar epithelium | 6.95e-07 | 83 |