FFCP PHASE1:Hg19::chr15:78933567..78933604,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1143 | |EntrezGene=1143 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1964 | |HGNC=1964 | ||
|TSSclassifier=strong | |||
|UniProt=P30926,E9PHE8,A4FTX5 | |UniProt=P30926,E9PHE8,A4FTX5 | ||
|association_with_transcript=0bp_to_ENST00000261751,ENST00000412074,NM_000750,uc002bed.1,uc002bee.1_5end | |association_with_transcript=0bp_to_ENST00000261751,ENST00000412074,NM_000750,uc002bed.1,uc002bee.1_5end | ||
|cluster_id=chr15:78933567..78933604,- | |||
|coexpression_cluster_id=C1753 | |coexpression_cluster_id=C1753 | ||
|description=CAGE_peak_1_at_CHRNB4_5end | |description=CAGE_peak_1_at_CHRNB4_5end | ||
|id=chr15:78933567..78933604,- | |id=chr15:78933567..78933604,- | ||
|ontology_enrichment_celltype=CL:0002322!2.19e-07!5;CL:0000047!2.26e-07!8 | |ontology_enrichment_celltype=CL:0002322!2.19e-07!5;CL:0000047!2.26e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.15e-17;5!CL:0002321;8.06e-14;15!CL:0000540;5.28e-09;6!CL:0000404;5.28e-09;6!CL:0000148;5.11e-08;10!CL:0000039;7.02e-08;7!CL:0000586;7.02e-08;7!CL:0000333;3.02e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.47e-17,5;CL:0000047,5.84e-10,8;CL:0000540,5.64e-09,6;CL:0000031,5.64e-09,6;CL:0000404,5.64e-09,6;CL:0000148,5.89e-08,10;CL:0000541,5.89e-08,10;CL:0000039,7.91e-08,7;CL:0000586,7.91e-08,7;CL:0000133,1.43e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;5.28e-09;6!UBERON:0009117;4.59e-08;10!UBERON:0005564;4.59e-08;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;7.86e-09;22!DOID:2994;7.86e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.74e-09,22;DOID:2994,8.74e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0003075!8.73e-18!86;UBERON:0007284!8.73e-18!86;UBERON:0000073!1.07e-17!94;UBERON:0001016!1.07e-17!94;UBERON:0005743!1.83e-17!86;UBERON:0002346!2.61e-16!90;UBERON:0004121!2.75e-15!169;UBERON:0001017!5.82e-15!82;UBERON:0000924!1.89e-14!173;UBERON:0006601!1.89e-14!173;UBERON:0001049!3.54e-13!57;UBERON:0005068!3.54e-13!57;UBERON:0006241!3.54e-13!57;UBERON:0007135!3.54e-13!57;UBERON:0003056!4.06e-13!61;UBERON:0000153!8.53e-12!129;UBERON:0007811!8.53e-12!129;UBERON:0000064!2.76e-11!219;UBERON:0002616!2.99e-11!59;UBERON:0007023!4.01e-11!115;UBERON:0000033!9.13e-11!123;UBERON:0002780!4.04e-09!41;UBERON:0001890!4.04e-09!41;UBERON:0006240!4.04e-09!41;UBERON:0000955!6.58e-09!69;UBERON:0006238!6.58e-09!69;UBERON:0003080!9.56e-09!42;UBERON:0000063!9.57e-09!97;UBERON:0000922!1.33e-08!612;UBERON:0000020!1.95e-08!23;UBERON:0000119!3.07e-08!312;UBERON:0000481!3.53e-08!347;UBERON:0001032!6.70e-08!24;UBERON:0004456!6.70e-08!24;UBERON:0000483!9.06e-08!309;UBERON:0002020!1.40e-07!34;UBERON:0003528!1.40e-07!34;UBERON:0002791!5.13e-07!33 | |ontology_enrichment_uberon=UBERON:0003075!8.73e-18!86;UBERON:0007284!8.73e-18!86;UBERON:0000073!1.07e-17!94;UBERON:0001016!1.07e-17!94;UBERON:0005743!1.83e-17!86;UBERON:0002346!2.61e-16!90;UBERON:0004121!2.75e-15!169;UBERON:0001017!5.82e-15!82;UBERON:0000924!1.89e-14!173;UBERON:0006601!1.89e-14!173;UBERON:0001049!3.54e-13!57;UBERON:0005068!3.54e-13!57;UBERON:0006241!3.54e-13!57;UBERON:0007135!3.54e-13!57;UBERON:0003056!4.06e-13!61;UBERON:0000153!8.53e-12!129;UBERON:0007811!8.53e-12!129;UBERON:0000064!2.76e-11!219;UBERON:0002616!2.99e-11!59;UBERON:0007023!4.01e-11!115;UBERON:0000033!9.13e-11!123;UBERON:0002780!4.04e-09!41;UBERON:0001890!4.04e-09!41;UBERON:0006240!4.04e-09!41;UBERON:0000955!6.58e-09!69;UBERON:0006238!6.58e-09!69;UBERON:0003080!9.56e-09!42;UBERON:0000063!9.57e-09!97;UBERON:0000922!1.33e-08!612;UBERON:0000020!1.95e-08!23;UBERON:0000119!3.07e-08!312;UBERON:0000481!3.53e-08!347;UBERON:0001032!6.70e-08!24;UBERON:0004456!6.70e-08!24;UBERON:0000483!9.06e-08!309;UBERON:0002020!1.40e-07!34;UBERON:0003528!1.40e-07!34;UBERON:0002791!5.13e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.22e-22;49!UBERON:0000473;3.63e-10;8!UBERON:0003296;1.15e-08;4!UBERON:0010133;1.15e-08;4!UBERON:0001905;1.82e-08;2!UBERON:0002757;1.82e-08;2!UBERON:0010134;1.82e-08;2!UBERON:0005408;1.82e-08;2!UBERON:0001899;1.82e-08;2!UBERON:0002370;4.01e-08;2!UBERON:0005058;4.01e-08;2!UBERON:0009113;4.01e-08;2!UBERON:0001871;1.02e-07;6!UBERON:0001876;2.42e-07;2!UBERON:0003135;2.67e-07;11!UBERON:0000013;3.02e-07;5!UBERON:0002410;3.02e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.99e-10,8;UBERON:0003296,1.14e-08,4;UBERON:0010133,1.14e-08,4;UBERON:0001016,1.28e-08,89;UBERON:0001905,1.79e-08,2;UBERON:0002757,1.79e-08,2;UBERON:0010134,1.79e-08,2;UBERON:0005408,1.79e-08,2;UBERON:0001899,1.79e-08,2;UBERON:0001871,7.91e-08,6;UBERON:0001876,1.66e-07,2;UBERON:0000013,3.02e-07,5;UBERON:0002410,3.02e-07,5;UBERON:0003135,3.34e-07,11 | |||
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|short_description=p1@CHRNB4 | |short_description=p1@CHRNB4 | ||
}} | }} |
Latest revision as of 07:16, 19 September 2015
Short description: | p1@CHRNB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHRNB4_5end |
Coexpression cluster: | C1753_neuroblastoma_pineal_rectum_retina_merkel_carcinosarcoma_eye |
Association with transcript: | 0bp_to_ENST00000261751, ENST00000412074, NM_000750, uc002bed.1, uc002bee.1_5end |
EntrezGene: | CHRNB4 |
HGNC: | 1964 |
UniProt: | P30926E9PHE8A4FTX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.47e-17 | 5 |
neuronal stem cell | 5.84e-10 | 8 |
neuron | 5.64e-09 | 6 |
neuroblast | 5.64e-09 | 6 |
electrically signaling cell | 5.64e-09 | 6 |
melanocyte | 5.89e-08 | 10 |
melanoblast | 5.89e-08 | 10 |
germ line cell | 7.91e-08 | 7 |
germ cell | 7.91e-08 | 7 |
neurectodermal cell | 1.43e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 4.99e-10 | 8 |
gland of diencephalon | 1.14e-08 | 4 |
neuroendocrine gland | 1.14e-08 | 4 |
nervous system | 1.28e-08 | 89 |
pineal body | 1.79e-08 | 2 |
regional part of epithalamus | 1.79e-08 | 2 |
secretory circumventricular organ | 1.79e-08 | 2 |
circumventricular organ | 1.79e-08 | 2 |
epithalamus | 1.79e-08 | 2 |
temporal lobe | 7.91e-08 | 6 |
amygdala | 1.66e-07 | 2 |
sympathetic nervous system | 3.02e-07 | 5 |
autonomic nervous system | 3.02e-07 | 5 |
male reproductive organ | 3.34e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.74e-09 | 22 |
germ cell cancer | 8.74e-09 | 22 |