FFCP PHASE1:Hg19::chr12:54410948..54410992,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3222 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5127 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=54bp_to_ENST00000512206_5end | |||
|cluster_id=chr12:54410948..54410992,+ | |||
|description=CAGE_peak_3_at_HOXC5_5end | |||
|id=chr12:54410948..54410992,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.05e-11!180;CL:0000136!2.48e-11!15;CL:0002334!6.58e-10!12;CL:0002620!2.91e-08!23;CL:0000057!2.64e-07!75;CL:0000035!3.23e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000136;4.77e-16;13!CL:0002334;1.17e-15;12!CL:0002620;5.44e-11;23!CL:0000188;7.18e-10;9!CL:0002540;7.84e-08;6!CL:0002320;5.41e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.67e-18,15;CL:0002334,1.34e-15,12;CL:0000057,1.94e-12,76;CL:0002620,2.66e-11,23;CL:0000188,1.00e-09,9;CL:0002540,5.62e-08,6;CL:0002320,3.19e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!2.67e-09!45;UBERON:0002416!2.67e-09!45;UBERON:0002097!6.06e-08!40;UBERON:0001013!3.04e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;4.09e-14;16!UBERON:0002036;4.09e-14;16!UBERON:0004457;4.66e-13;9!UBERON:0000042;4.66e-13;9!UBERON:0004905;3.34e-11;8!UBERON:0000982;3.34e-11;8!UBERON:0004770;3.34e-11;8!UBERON:0003688;2.61e-09;6!UBERON:0002358;2.61e-09;6!UBERON:0003684;2.61e-09;6!UBERON:0001178;2.61e-09;6!UBERON:0001013;4.68e-09;14!UBERON:0001443;3.65e-08;11!UBERON:0011135;1.90e-07;5!UBERON:0002216;1.90e-07;5!UBERON:0011134;1.90e-07;5!UBERON:0002209;1.90e-07;5!UBERON:0002213;1.90e-07;5!UBERON:0007844;1.90e-07;5!UBERON:0011138;1.90e-07;5!UBERON:0001130;1.90e-07;5!UBERON:0001066;1.90e-07;5!UBERON:0001468;1.90e-07;5!UBERON:0002204;2.98e-07;70!UBERON:0000310;4.43e-07;10!UBERON:0002199;5.49e-07;46!UBERON:0002416;5.49e-07;46!UBERON:0004765;5.89e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.66e-11,8;UBERON:0000982,2.66e-11,8;UBERON:0004770,2.66e-11,8;UBERON:0002199,3.75e-11,46;UBERON:0002416,3.75e-11,46;UBERON:0002384,5.87e-10,371;UBERON:0003688,2.90e-09,6;UBERON:0002358,2.90e-09,6;UBERON:0003684,2.90e-09,6;UBERON:0001178,2.90e-09,6;UBERON:0004457,4.33e-09,12;UBERON:0000042,4.33e-09,12;UBERON:0001013,5.05e-09,14;UBERON:0002097,7.61e-09,41;UBERON:0001443,3.35e-08,11;UBERON:0011135,1.27e-07,5;UBERON:0002216,1.27e-07,5;UBERON:0011134,1.27e-07,5;UBERON:0002209,1.27e-07,5;UBERON:0002213,1.27e-07,5;UBERON:0005856,1.27e-07,5;UBERON:0005866,1.27e-07,5;UBERON:0005863,1.27e-07,5;UBERON:0007844,1.27e-07,5;UBERON:0011138,1.27e-07,5;UBERON:0001130,1.27e-07,5;UBERON:0001066,1.27e-07,5;UBERON:0001468,1.27e-07,5;UBERON:0000310,3.98e-07,10 | |||
|phase1_expression=9.08391896352783,5.78071414505655,5.3562673556469,5.00366491765652,4.02264984984559,8.72338524100369,2.53299878168311,0,2.08948502559871,0,0,0,0,2.72285976512103,2.98257638155124,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,1.50401373190767,1.59331170856906,1.5905718941022,0.973269740605272,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,2.48485975847659,0.12663051166458,0.529636723252875,0.573673241497627,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0.298897361103602,2.23125547423153,1.94247533241758,2.24721290723598,0,0,0,0,0,10.0117749813183,7.90479955997862,0,0,0,0,0,0,0,3.94657198515496,3.20336083227851,1.48352330811693,1.80054657650641,1.13357782162283,4.63752972082133,2.79175284497385,2.70042131586026,3.31285817548075,4.03894038790583,2.85354685791128,0,2.84007674013291,1.81353776809752,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,2.78620756819187,1.44375896333917,0.473227200159376,0.505754070234305,0,0.55146986366197,0,0.237270619111097,0.539325232640658,0.392442930250692,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.219500570817251,0,0.402115889646523,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0.358234090811393,0.581267877027924,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0.698476837213859,1.14596527667483,4.68869788840188,5.13217338068116,0.514137463516618,0.600686115687835,0.571652865261156,0,0,0,0.646358578788889,28.6125156681506,0.845302752556,0.26593811658487,1.04007436911366,3.08648849114571,7.09245660116391,1.5985330740966,0.142977993658148,1.62786481617433,2.46972101034231,0.65147236858747,0,0.791951872933429,0.602878754119172,0,0.99972991182057,0,0,0,0,0,0,1.73737568001095,1.84928690295345,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,3.80343624329334,5.50187573165645,3.52644530809656,0,0,0,0,2.10662269809403,2.27407504055985,2.0694614258501,1.99267679560631,0.368738337083406,0.781952530212746,0,0,0,0,0,0,0,0,9.92431231275107,9.51464234385987,8.41980283299221,4.74114852246094,4.09365799253363,3.69964018630297,5.93672265779964,1.85051632563187,1.24293207719189,5.00975651684236,1.03850885836724,2.32420756919918,0.483437798366489,0,0,0,0,0,0.451199612907412,0.0770153371044148,0,1.46139224653261,0,0,0,0.431831832204279,0,2.43851793789468,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0.824328093181778,1.09883357782012,1.40266149865,0,0,0,5.22021878777459,2.00263202249038,2.30255512089194,2.20538515975249,8.48619934459362,4.0604674295984,3.92042486114064,5.69805028139119,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0.48763373908959,0.243713489631284,2.11300293513511,0,0,0,0.551365343546124,0,0,0,0,1.01455188481352,0.6196469961995,1.40847801266121,0.860468113224309,1.17898849215745,1.426684205925,0,2.11107635297664,8.89096210991735,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.854592569019785,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54175355742871,1.8204078262427,0,1.13654458722565,0,0,0,0,0,0,0.659215496907038,0.422250816255987,0.597743964753209,0.552567831062295,0.251932747854276,0.920418142519393,0,0,0.179736702294654,0,0,0.591860433821602,0,2.22273980289274,0,0,0,0,0.0874599999961957,4.34999745260876,0,0,0.472775363535873,0.344743373241465,0.874813840149763,6.25049981759852,0,0,0,0,0,0,0.544692317594951,0,0.153900517007594,0,0,0,0,0,0.457987967009312,0,0,0,0,0.451191321234361,0.19606253431774,0.167821586975843,0.189753732724185,0,0,0,0.424059214301822,0.216388639742091,1.99052386215701,0.176915129006678,0.611030144933625,0,0.123563938946503,0,0,3.21031058919516,0,0,0,0.728341138602278,0,0,0,0,0.751617097072463,0.622129148383483,0,0,0,0,0,2.91216813327591,0,0,0.0870592065804026,1.92199335066233,2.92376255201748,0.580537987734511,1.0232504392066,0.328461828212837,0.193978032976839,0.970817393606503,0,0,0.596143835108969,0,0.195551382734803,0,0,0.19980960958213,0.144090417154106,3.32156128881155,0,0,0.869767748958028,0.235694034616795,0.543616824294456,0.418411385249333,0.713987523454252,0,0,0,0,1.71906176567983,0,0,0,0,0.199679000498991,0,0,0,1.08089965062721,0,0,0,0,0.393709926058995,0.0846733320657845,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0.670869375198532,1.33969702408637,1.31136470337495,0.739202355635845,0.537862017998534,0.191915197319445,0,0,2.79695391420225,1.08599920350743,0,0.326587360109409,0,0.082092520749339,2.89659637035217,1.24643300672138,0,0,0,0,0.684347351537318,0,0.106787412567695,0,0,0.992332043623902,0,0,0.638341257770182,11.424373870759,6.2672473505675,7.04594826555962,10.1640515520039,0.471162288750703,0,0,0,0,0,0,1.24513771442608,0,1.66814029295813,0.856396000634902,0,1.40500471742064,0.43476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| |||
|short_description=p3@HOXC5 | |||
}} |
Latest revision as of 04:56, 19 September 2015
Short description: | p3@HOXC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXC5_5end |
Coexpression cluster: | NA |
Association with transcript: | 54bp_to_ENST00000512206_5end |
EntrezGene: | HOXC5 |
HGNC: | 5127 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.67e-18 | 15 |
preadipocyte | 1.34e-15 | 12 |
fibroblast | 1.94e-12 | 76 |
skin fibroblast | 2.66e-11 | 23 |
cell of skeletal muscle | 1.00e-09 | 9 |
mesenchymal stem cell of the bone marrow | 5.62e-08 | 6 |
connective tissue cell | 3.19e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.66e-11 | 8 |
skeletal joint | 2.66e-11 | 8 |
articular system | 2.66e-11 | 8 |
integument | 3.75e-11 | 46 |
integumental system | 3.75e-11 | 46 |
connective tissue | 5.87e-10 | 371 |
omentum | 2.90e-09 | 6 |
peritoneum | 2.90e-09 | 6 |
abdominal cavity | 2.90e-09 | 6 |
visceral peritoneum | 2.90e-09 | 6 |
cavity lining | 4.33e-09 | 12 |
serous membrane | 4.33e-09 | 12 |
adipose tissue | 5.05e-09 | 14 |
skin of body | 7.61e-09 | 41 |
chest | 3.35e-08 | 11 |
intervertebral cartilage | 1.27e-07 | 5 |
symphysis | 1.27e-07 | 5 |
nonsynovial joint | 1.27e-07 | 5 |
fibrous joint | 1.27e-07 | 5 |
cartilaginous joint | 1.27e-07 | 5 |
developing mesenchymal condensation | 1.27e-07 | 5 |
pre-cartilage condensation | 1.27e-07 | 5 |
cartilaginous condensation | 1.27e-07 | 5 |
cartilage element | 1.27e-07 | 5 |
post-cranial axial skeletal system | 1.27e-07 | 5 |
vertebral column | 1.27e-07 | 5 |
intervertebral disk | 1.27e-07 | 5 |
intervertebral joint | 1.27e-07 | 5 |
breast | 3.98e-07 | 10 |