FFCP PHASE1:Hg19::chr22:19950047..19950056,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:19950047..19950056,+ to FFCP PHASE1:Hg19::chr22:19950047..19950056,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1312 | |EntrezGene=1312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2228 | |HGNC=2228 | ||
|TSSclassifier=strong | |||
|UniProt=P21964 | |UniProt=P21964 | ||
|association_with_transcript=-13bp_to_ENST00000449653,NM_007310_5end | |||
|cluster_id=chr22:19950047..19950056,+ | |||
|coexpression_cluster_id=C2638 | |||
|description=CAGE_peak_9_at_COMT_5end | |||
|id=chr22:19950047..19950056,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.13e-19!254;CL:0000223!1.94e-15!59;CL:0002076!2.07e-14!43;CL:0002251!2.70e-09!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.80e-11;42!CL:0002251;2.95e-10;20!CL:0002202;2.67e-09;9!CL:0002632;2.67e-09;9!CL:0000349;7.15e-09;19!CL:0000307;3.53e-08;3!CL:0002537;8.01e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.46e-19,58;CL:0000066,3.96e-18,253;CL:0002076,1.01e-15,42;CL:0002251,4.12e-10,20;CL:0002202,3.19e-09,9;CL:0002632,3.19e-09,9;CL:0000349,7.32e-09,19;CL:0000068,4.82e-08,3;CL:0000069,4.82e-08,3;CL:0000307,4.82e-08,3;CL:0000377,4.82e-08,3;CL:0002537,9.17e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000223;1.15e-10;58!CL:0000377;3.53e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!1.66e-07!14;DOID:305!2.22e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:299;7.94e-12;25!DOID:1749;2.62e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.84e-12,106;DOID:299,7.26e-12,25;DOID:1749,3.59e-10,14;DOID:0050687,3.30e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.51e-17!169;UBERON:0000925!2.51e-17!169;UBERON:0006595!2.51e-17!169;UBERON:0001007!1.13e-15!155;UBERON:0001555!1.13e-15!155;UBERON:0007026!1.13e-15!155;UBERON:0004921!3.02e-12!129;UBERON:0004185!3.02e-12!129;UBERON:0000077!1.37e-11!130;UBERON:0000161!4.74e-10!35;UBERON:0001004!4.95e-10!72;UBERON:0005911!3.42e-09!82;UBERON:0000166!1.96e-08!21;UBERON:0001041!2.41e-08!98;UBERON:0005177!1.49e-07!107;UBERON:0000466!1.69e-07!126;UBERON:0000475!1.82e-07!365;UBERON:0000481!2.97e-07!347;UBERON:0003929!3.24e-07!54;UBERON:0000165!4.27e-07!28;UBERON:0000930!4.27e-07!28;UBERON:0003104!4.60e-07!238;UBERON:0009142!4.60e-07!238;UBERON:0000064!6.08e-07!219;UBERON:0009569!7.12e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.15e-14;10!UBERON:0000158;2.15e-14;10!UBERON:0000305;3.57e-12;7!UBERON:0002365;1.34e-08;31!UBERON:0002330;1.34e-08;31!UBERON:0000478;3.61e-08;24!UBERON:0004921;1.33e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.58e-15,14;UBERON:0000158,1.58e-15,14;UBERON:0004119,5.77e-13,160;UBERON:0000925,5.77e-13,160;UBERON:0006595,5.77e-13,160;UBERON:0001007,2.27e-12,145;UBERON:0001555,2.27e-12,145;UBERON:0007026,2.27e-12,145;UBERON:0000305,3.40e-12,7;UBERON:0004921,5.36e-11,118;UBERON:0001041,1.07e-10,87;UBERON:0004871,1.43e-10,8;UBERON:0002365,4.90e-09,31;UBERON:0002330,4.90e-09,31;UBERON:0000478,3.70e-08,24;UBERON:0001004,1.28e-07,74;UBERON:0005911,1.82e-07,82;UBERON:0004923,3.15e-07,66;UBERON:0000166,7.28e-07,22 | |||
|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0.872338524100369,0,0,0,0.491467873003018,2.09340350391728,2.83973783769224,3.4289707169699,0.123766352960047,0.662794751455832,0.672325146451775,0,0,0,0.123121058076788,0.408001382488506,0,0,0,0.125542639594803,0,0,0,0,0.383829398097213,0,1.83884244895785,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0.447830948479849,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0.0945348171640679,0.221729397462564,0,0.392937226493138,1.82147644146271,2.59549109949101,0,0,0.26591592103773,0,0,0,0.198762407366705,1.72046919021225,0,0,0,0,0.417989933073621,0,0,0,0.402829317109147,0,0,0,0,0,0.44905874525234,0.112611480483322,0,0,0,0,0,2.18047026071267,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.421352420106746,0.408308342509787,0.491337269247072,0.103325781175765,0,0,0,0.718618141816238,0,0.500474079487857,0,0,0,0.150238058906597,0.226864366320042,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0,0,0.252433774244115,0,0,0.355009592516614,0,0,1.35282597214308,0.272746120590835,1.14721838155602,0.243947412259191,0,0,0,0.504641701751257,0,0,0.643240938192885,0,0.464367928031979,0,0.118306800039844,0.168584690078102,0,0,0,0,0.134831308160164,0.196221465125346,0,0.738155454624648,0,0,0,2.53510069643662,0.982827216677626,1.77236972004421,0,2.45976877086227,0.171567810298526,0.98775256867763,2.24803506515239,1.80952150340936,0.833296006426766,0,0,0,0,0,0,0,0.190254152234598,3.1608175918371,0.858486162094873,0,0.234004265139238,0.148631162288728,2.81201501960331,0,0.425325291727159,0.179117045405697,1.74380363108377,3.83382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0.845302752556,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.535286966391485,0.630809660135739,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.909382714338778,0,4.23346410661552,0,0.306923946576125,0,0,0,0,0,0,0,0.164254312027618,0,0.464841513839837,0.966875596732978,1.40354529212299,0.276242966807689,0.114814448164607,0,0.131124414959424,0.451199612907412,0.231046011313244,0,0,0.105551628892876,0,0.340187410553031,0,0,0.541892875087706,1.00337954770971,0.509752546090077,1.66215201785745,0.895499018888713,0,0,0,0,0,3.29731237272711,0.0915694648183434,0.082509499920588,0,1.95018073810956,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.165284915360978,0,0.255225424989168,0.2023155617111,0,0,0,0.308033580176089,0,0,0,0.429374660225974,0,0,0,0.255897791311334,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0.243713489631284,0,0,0,1.13008116620243,0,0.66343897524122,0,0.578775534266688,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0,0,0,0,1.05844323998063,2.68120910214315,4.3556393944529,2.35359501941948,0.43050537267123,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,3.67560323971548,0.185803175125719,0,0,0,0,0,0.211673582723883,0,0.842391534340376,0,0,0,0.169291777801603,0,0,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,1.8714054040822,0,0,0,0,1.67121139316383,2.67268212749375,2.45728561679386,0,0,0.222617410045812,0,0,0.19924798825107,0,0.251932747854276,0,0,0.311039587661807,0.808815160325942,0.716084698702437,0.511572370226872,0.197286811273867,0,0,0,0,0,1.82299432759663,7.95885999965381,0,10.013823449124,4.83081935556256,7.8007934983419,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.697118721393016,0.615602068030377,0.113942055847001,0,0.0897576444097721,0,1.5950057986596,0,2.13213910407454,0,0,0,0.225595660617181,0.19606253431774,0.167821586975843,0,0,0,2.28525931422807,2.26164914294305,0,0,0.442287822516696,0.611030144933625,0,0.247127877893006,0.417687798021821,0,0,0,0,6.84826166262314,0,1.18375320854817,1.20990716048664,0,0,0,0,0,0.330991955875499,0,0,0,0,7.98374796341602,0.293977192243133,0.783532859223623,0.698906672968121,0,0,0,0,2.61870344518732,0,0.451961481561065,0.274083849293502,0,0.189932387867636,0.391102765469606,0.0801588202515337,1.28071796843612,0.19980960958213,3.16998917739033,0,0,0,0,5.1852687615695,0.135904206073614,0,0,0.288950589901519,0,0.136905378891993,0,0,0,0,0,0,1.99679000498991,0,0.223171457441873,0,0.360299883542404,0,3.23011047459617,2.88455504334083,2.96575592958414,0,0,0,0.136203406111576,0.160753148465019,0.550157746388935,0.415440338029185,0,0,0,3.68978156359193,0.945668487590378,0.681909645754975,0.211200673038813,0,0,0,0,0,0,0,1.30634944043764,1.19730191562487,0,0.340776043570843,0.113312091520126,3.3707013745959,0,0.129282956361551,0.26446520348538,0,4.9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| 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| ||
|short_description=p9@COMT | |||
}} | }} |
Latest revision as of 04:04, 19 September 2015
Short description: | p9@COMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COMT_5end |
Coexpression cluster: | C2638_breast_bronchogenic_Amniotic_liver_endometrioid_Hepatocyte_serous |
Association with transcript: | -13bp_to_ENST00000449653, NM_007310_5end |
EntrezGene: | COMT |
HGNC: | 2228 |
UniProt: | P21964 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.46e-19 | 58 |
epithelial cell | 3.96e-18 | 253 |
endo-epithelial cell | 1.01e-15 | 42 |
epithelial cell of alimentary canal | 4.12e-10 | 20 |
epithelial cell of tracheobronchial tree | 3.19e-09 | 9 |
epithelial cell of lower respiratory tract | 3.19e-09 | 9 |
extraembryonic cell | 7.32e-09 | 19 |
duct epithelial cell | 4.82e-08 | 3 |
branched duct epithelial cell | 4.82e-08 | 3 |
tracheal epithelial cell | 4.82e-08 | 3 |
tracheoblast | 4.82e-08 | 3 |
amnion mesenchymal stem cell | 9.17e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.58e-15 | 14 |
membranous layer | 1.58e-15 | 14 |
endoderm-derived structure | 5.77e-13 | 160 |
endoderm | 5.77e-13 | 160 |
presumptive endoderm | 5.77e-13 | 160 |
digestive system | 2.27e-12 | 145 |
digestive tract | 2.27e-12 | 145 |
primitive gut | 2.27e-12 | 145 |
amnion | 3.40e-12 | 7 |
subdivision of digestive tract | 5.36e-11 | 118 |
foregut | 1.07e-10 | 87 |
somatic layer of lateral plate mesoderm | 1.43e-10 | 8 |
exocrine gland | 4.90e-09 | 31 |
exocrine system | 4.90e-09 | 31 |
extraembryonic structure | 3.70e-08 | 24 |
respiratory system | 1.28e-07 | 74 |
endo-epithelium | 1.82e-07 | 82 |
organ component layer | 3.15e-07 | 66 |
oral opening | 7.28e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.84e-12 | 106 |
adenocarcinoma | 7.26e-12 | 25 |
squamous cell carcinoma | 3.59e-10 | 14 |
cell type cancer | 3.30e-07 | 143 |