FFCP PHASE1:Hg19::chr1:70033122..70033131,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57554 | |EntrezGene=57554 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=18531 | |HGNC=18531 | ||
|TSSclassifier=strong | |||
|UniProt=Q96NW7 | |UniProt=Q96NW7 | ||
|association_with_transcript=254bp_to_uc001deo.1_5end | |association_with_transcript=254bp_to_uc001deo.1_5end | ||
|cluster_id=chr1:70033122..70033131,+ | |||
|coexpression_cluster_id=C10 | |coexpression_cluster_id=C10 | ||
|description=CAGE_peak_20_at_LRRC7_5end | |description=CAGE_peak_20_at_LRRC7_5end | ||
|id=chr1:70033122..70033131,+ | |id=chr1:70033122..70033131,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!8.33e-91!34;UBERON:0003528!8.33e-91!34;UBERON:0001869!1.44e-89!32;UBERON:0001893!3.98e-84!34;UBERON:0002780!8.23e-81!41;UBERON:0001890!8.23e-81!41;UBERON:0006240!8.23e-81!41;UBERON:0001049!9.44e-81!57;UBERON:0005068!9.44e-81!57;UBERON:0006241!9.44e-81!57;UBERON:0007135!9.44e-81!57;UBERON:0002791!1.04e-79!33;UBERON:0003080!8.59e-79!42;UBERON:0002616!7.73e-78!59;UBERON:0002619!1.26e-74!22;UBERON:0000955!6.55e-74!69;UBERON:0006238!6.55e-74!69;UBERON:0005743!7.99e-70!86;UBERON:0001017!2.05e-69!82;UBERON:0000956!1.65e-65!25;UBERON:0000203!1.65e-65!25;UBERON:0001950!2.33e-65!20;UBERON:0000073!1.09e-62!94;UBERON:0001016!1.09e-62!94;UBERON:0003075!1.08e-58!86;UBERON:0007284!1.08e-58!86;UBERON:0003056!6.94e-57!61;UBERON:0002346!8.22e-56!90;UBERON:0000033!2.48e-44!123;UBERON:0000153!5.64e-42!129;UBERON:0007811!5.64e-42!129;UBERON:0007023!4.75e-37!115;UBERON:0004121!3.22e-32!169;UBERON:0000924!2.54e-31!173;UBERON:0006601!2.54e-31!173;UBERON:0000200!1.30e-29!6;UBERON:0002308!5.05e-26!9;UBERON:0000125!5.05e-26!9;UBERON:0001871!3.70e-22!7;UBERON:0000369!5.00e-20!4;UBERON:0002435!5.00e-20!4;UBERON:0000204!5.00e-20!4;UBERON:0010082!5.00e-20!4;UBERON:0002420!1.12e-19!9;UBERON:0007245!1.12e-19!9;UBERON:0010009!1.12e-19!9;UBERON:0010011!1.12e-19!9;UBERON:0000454!1.12e-19!9;UBERON:0000025!2.88e-19!194;UBERON:0009663!8.49e-18!7;UBERON:0001872!2.48e-16!5;UBERON:0000349!2.91e-16!5;UBERON:0002021!3.15e-16!5;UBERON:0005383!1.05e-15!3;UBERON:0005382!1.05e-15!3;UBERON:0002771!1.90e-15!3;UBERON:0000064!4.99e-15!219;UBERON:0004111!3.37e-14!241;UBERON:0000477!6.36e-12!286;UBERON:0000483!2.10e-11!309;UBERON:0001870!3.02e-11!2;UBERON:0000119!3.16e-11!312;UBERON:0000475!3.64e-11!365;UBERON:0001954!3.70e-11!2;UBERON:0003022!3.70e-11!2;UBERON:0002421!3.70e-11!2;UBERON:0002600!3.70e-11!2;UBERON:0001873!4.75e-11!2;UBERON:0010122!4.75e-11!2;UBERON:0002148!1.81e-10!2;UBERON:0009662!1.81e-10!2;UBERON:0004733!1.20e-09!12;UBERON:0002028!1.20e-09!12;UBERON:0007277!1.20e-09!12;UBERON:0002298!1.54e-09!8;UBERON:0000481!2.53e-09!347;UBERON:0004732!6.92e-09!13;UBERON:0000062!7.23e-08!511;UBERON:0003076!1.14e-07!15;UBERON:0003057!1.14e-07!15;UBERON:0000988!2.94e-07!3;UBERON:0006331!2.94e-07!3;UBERON:0001896!4.59e-07!3;UBERON:0005290!4.59e-07!3;UBERON:0010096!4.59e-07!3 | |ontology_enrichment_uberon=UBERON:0002020!8.33e-91!34;UBERON:0003528!8.33e-91!34;UBERON:0001869!1.44e-89!32;UBERON:0001893!3.98e-84!34;UBERON:0002780!8.23e-81!41;UBERON:0001890!8.23e-81!41;UBERON:0006240!8.23e-81!41;UBERON:0001049!9.44e-81!57;UBERON:0005068!9.44e-81!57;UBERON:0006241!9.44e-81!57;UBERON:0007135!9.44e-81!57;UBERON:0002791!1.04e-79!33;UBERON:0003080!8.59e-79!42;UBERON:0002616!7.73e-78!59;UBERON:0002619!1.26e-74!22;UBERON:0000955!6.55e-74!69;UBERON:0006238!6.55e-74!69;UBERON:0005743!7.99e-70!86;UBERON:0001017!2.05e-69!82;UBERON:0000956!1.65e-65!25;UBERON:0000203!1.65e-65!25;UBERON:0001950!2.33e-65!20;UBERON:0000073!1.09e-62!94;UBERON:0001016!1.09e-62!94;UBERON:0003075!1.08e-58!86;UBERON:0007284!1.08e-58!86;UBERON:0003056!6.94e-57!61;UBERON:0002346!8.22e-56!90;UBERON:0000033!2.48e-44!123;UBERON:0000153!5.64e-42!129;UBERON:0007811!5.64e-42!129;UBERON:0007023!4.75e-37!115;UBERON:0004121!3.22e-32!169;UBERON:0000924!2.54e-31!173;UBERON:0006601!2.54e-31!173;UBERON:0000200!1.30e-29!6;UBERON:0002308!5.05e-26!9;UBERON:0000125!5.05e-26!9;UBERON:0001871!3.70e-22!7;UBERON:0000369!5.00e-20!4;UBERON:0002435!5.00e-20!4;UBERON:0000204!5.00e-20!4;UBERON:0010082!5.00e-20!4;UBERON:0002420!1.12e-19!9;UBERON:0007245!1.12e-19!9;UBERON:0010009!1.12e-19!9;UBERON:0010011!1.12e-19!9;UBERON:0000454!1.12e-19!9;UBERON:0000025!2.88e-19!194;UBERON:0009663!8.49e-18!7;UBERON:0001872!2.48e-16!5;UBERON:0000349!2.91e-16!5;UBERON:0002021!3.15e-16!5;UBERON:0005383!1.05e-15!3;UBERON:0005382!1.05e-15!3;UBERON:0002771!1.90e-15!3;UBERON:0000064!4.99e-15!219;UBERON:0004111!3.37e-14!241;UBERON:0000477!6.36e-12!286;UBERON:0000483!2.10e-11!309;UBERON:0001870!3.02e-11!2;UBERON:0000119!3.16e-11!312;UBERON:0000475!3.64e-11!365;UBERON:0001954!3.70e-11!2;UBERON:0003022!3.70e-11!2;UBERON:0002421!3.70e-11!2;UBERON:0002600!3.70e-11!2;UBERON:0001873!4.75e-11!2;UBERON:0010122!4.75e-11!2;UBERON:0002148!1.81e-10!2;UBERON:0009662!1.81e-10!2;UBERON:0004733!1.20e-09!12;UBERON:0002028!1.20e-09!12;UBERON:0007277!1.20e-09!12;UBERON:0002298!1.54e-09!8;UBERON:0000481!2.53e-09!347;UBERON:0004732!6.92e-09!13;UBERON:0000062!7.23e-08!511;UBERON:0003076!1.14e-07!15;UBERON:0003057!1.14e-07!15;UBERON:0000988!2.94e-07!3;UBERON:0006331!2.94e-07!3;UBERON:0001896!4.59e-07!3;UBERON:0005290!4.59e-07!3;UBERON:0010096!4.59e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001875;4.66e-21;2!UBERON:0006514;4.66e-21;2!UBERON:0002114;1.60e-14;2!UBERON:0000922;6.13e-12;49!UBERON:0003528;8.99e-11;34!UBERON:0002020;8.99e-11;34!UBERON:0002791;2.18e-10;32!UBERON:0001869;2.18e-10;32!UBERON:0002108;2.97e-09;4!UBERON:0001872;2.97e-09;5!UBERON:0002021;2.97e-09;5!UBERON:0001950;1.42e-08;20!UBERON:0001016;2.43e-08;83!UBERON:0000955;2.60e-08;68!UBERON:0002780;4.44e-08;41!UBERON:0001890;4.44e-08;41!UBERON:0002619;6.52e-08;22!UBERON:0001893;3.51e-07;34!UBERON:0000956;4.15e-07;25!UBERON:0000203;4.15e-07;25!UBERON:0009663;5.70e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001875,4.66e-21,2;UBERON:0006514,4.66e-21,2;UBERON:0002114,1.40e-14,2;UBERON:0002791,1.43e-11,32;UBERON:0001869,1.43e-11,32;UBERON:0003528,5.87e-11,34;UBERON:0002020,5.87e-11,34;UBERON:0001893,5.87e-11,34;UBERON:0000955,1.01e-09,68;UBERON:0006238,1.01e-09,68;UBERON:0002108,2.74e-09,4;UBERON:0002780,2.90e-09,41;UBERON:0001890,2.90e-09,41;UBERON:0003080,2.90e-09,41;UBERON:0006240,2.90e-09,41;UBERON:0001872,3.22e-09,5;UBERON:0002021,3.49e-09,5;UBERON:0001950,1.59e-08,20;UBERON:0001017,2.69e-08,81;UBERON:0002619,7.23e-08,22;UBERON:0001016,1.53e-07,89;UBERON:0000073,2.27e-07,53;UBERON:0002616,2.27e-07,53;UBERON:0000956,4.55e-07,25;UBERON:0000203,4.55e-07,25;UBERON:0001049,5.09e-07,56;UBERON:0005068,5.09e-07,56;UBERON:0006241,5.09e-07,56;UBERON:0007135,5.09e-07,56;UBERON:0009663,5.70e-07,7 | |||
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|short_description=p20@LRRC7 | |short_description=p20@LRRC7 | ||
}} | }} |
Latest revision as of 03:30, 19 September 2015
Short description: | p20@LRRC7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_LRRC7_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 254bp_to_uc001deo.1_5end |
EntrezGene: | LRRC7 |
HGNC: | 18531 |
UniProt: | Q96NW7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
globus pallidus | 4.66e-21 | 2 |
pallidum | 4.66e-21 | 2 |
duodenum | 1.40e-14 | 2 |
regional part of telencephalon | 1.43e-11 | 32 |
cerebral hemisphere | 1.43e-11 | 32 |
brain grey matter | 5.87e-11 | 34 |
gray matter | 5.87e-11 | 34 |
telencephalon | 5.87e-11 | 34 |
brain | 1.01e-09 | 68 |
future brain | 1.01e-09 | 68 |
small intestine | 2.74e-09 | 4 |
regional part of forebrain | 2.90e-09 | 41 |
forebrain | 2.90e-09 | 41 |
anterior neural tube | 2.90e-09 | 41 |
future forebrain | 2.90e-09 | 41 |
parietal lobe | 3.22e-09 | 5 |
occipital lobe | 3.49e-09 | 5 |
neocortex | 1.59e-08 | 20 |
central nervous system | 2.69e-08 | 81 |
regional part of cerebral cortex | 7.23e-08 | 22 |
nervous system | 1.53e-07 | 89 |
regional part of nervous system | 2.27e-07 | 53 |
regional part of brain | 2.27e-07 | 53 |
cerebral cortex | 4.55e-07 | 25 |
pallium | 4.55e-07 | 25 |
neural tube | 5.09e-07 | 56 |
neural rod | 5.09e-07 | 56 |
future spinal cord | 5.09e-07 | 56 |
neural keel | 5.09e-07 | 56 |
telencephalic nucleus | 5.70e-07 | 7 |