FFCP PHASE1:Hg19::chr6:41604747..41604796,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4188 | |EntrezGene=4188 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6967 | |HGNC=6967 | ||
|TSSclassifier=strong | |||
|UniProt=B1AKB7 | |UniProt=B1AKB7 | ||
|association_with_transcript=0bp_to_ENST00000419164_5end | |association_with_transcript=0bp_to_ENST00000419164_5end | ||
|cluster_id=chr6:41604747..41604796,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_1_at_MDFI_5end | |description=CAGE_peak_1_at_MDFI_5end | ||
|id=chr6:41604747..41604796,+ | |id=chr6:41604747..41604796,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.08e-35!254;CL:0000076!3.34e-13!62;CL:0002076!4.47e-12!43;CL:0002321!1.16e-11!248;CL:0000220!1.61e-11!246;CL:0000115!8.84e-09!35;CL:0002078!9.26e-09!44;CL:0002368!1.06e-08!13;CL:0002139!4.26e-08!24;CL:0000223!1.22e-07!59;CL:1000449!2.24e-07!16;CL:0000071!3.81e-07!18;CL:0002546!3.81e-07!18 | |ontology_enrichment_celltype=CL:0000066!4.08e-35!254;CL:0000076!3.34e-13!62;CL:0002076!4.47e-12!43;CL:0002321!1.16e-11!248;CL:0000220!1.61e-11!246;CL:0000115!8.84e-09!35;CL:0002078!9.26e-09!44;CL:0002368!1.06e-08!13;CL:0002139!4.26e-08!24;CL:0000223!1.22e-07!59;CL:1000449!2.24e-07!16;CL:0000071!3.81e-07!18;CL:0002546!3.81e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.45e-11;42!CL:0002368;8.73e-11;13!CL:1000449;5.37e-10;15!CL:0002681;2.56e-08;12!CL:0002584;2.56e-08;12!CL:1000497;3.15e-08;17!CL:0002518;3.15e-08;17!CL:0002251;8.66e-08;20!CL:0000071;1.08e-07;18!CL:1000507;1.28e-07;10!CL:1000494;1.28e-07;10!CL:0002202;2.11e-07;9!CL:0002632;2.11e-07;9!CL:0000076;3.25e-07;63!CL:0000115;3.73e-07;36!CL:0002139;3.80e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.77e-37,253;CL:0002076,4.08e-15,42;CL:0000076,8.83e-15,63;CL:0002321,1.19e-11,250;CL:0002368,8.50e-11,13;CL:1000449,4.92e-10,15;CL:0000223,8.12e-10,58;CL:0000115,1.64e-08,36;CL:0002681,2.31e-08,12;CL:0002584,2.31e-08,12;CL:0002078,2.62e-08,45;CL:1000497,2.92e-08,17;CL:0002518,2.92e-08,17;CL:0002251,8.76e-08,20;CL:0000071,8.95e-08,18;CL:0002546,8.95e-08,18;CL:1000507,1.36e-07,10;CL:1000494,1.36e-07,10;CL:0002202,2.03e-07,9;CL:0002632,2.03e-07,9;CL:0002139,3.13e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;1.08e-07;18 | |||
|ontology_enrichment_disease=DOID:1749!1.37e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.04e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.09e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.94e-13!169;UBERON:0000925!7.94e-13!169;UBERON:0006595!7.94e-13!169;UBERON:0000464!2.94e-12!104;UBERON:0000466!1.82e-11!126;UBERON:0000119!7.94e-11!312;UBERON:0000483!2.09e-10!309;UBERON:0001048!2.75e-10!168;UBERON:0000922!5.42e-10!612;UBERON:0000468!1.67e-09!659;UBERON:0001004!4.60e-09!72;UBERON:0000481!6.28e-09!347;UBERON:0000477!6.40e-09!286;UBERON:0002050!6.44e-09!605;UBERON:0005423!6.44e-09!605;UBERON:0004111!9.10e-09!241;UBERON:0000923!1.04e-08!604;UBERON:0005291!1.04e-08!604;UBERON:0006598!1.04e-08!604;UBERON:0002532!1.04e-08!604;UBERON:0000077!1.45e-08!130;UBERON:0000064!1.91e-08!219;UBERON:0001007!3.76e-08!155;UBERON:0001555!3.76e-08!155;UBERON:0007026!3.76e-08!155;UBERON:0000467!1.02e-07!625;UBERON:0002553!1.24e-07!70;UBERON:0003104!1.26e-07!238;UBERON:0009142!1.26e-07!238;UBERON:0000480!1.40e-07!626;UBERON:0005631!1.82e-07!14;UBERON:0000158!1.82e-07!14;UBERON:0004211!2.24e-07!16;UBERON:0001285!2.24e-07!16;UBERON:0007684!2.24e-07!16;UBERON:0003220!2.24e-07!16;UBERON:0004208!2.24e-07!16;UBERON:0000065!3.25e-07!53;UBERON:0000080!3.46e-07!18;UBERON:0002120!3.46e-07!18;UBERON:0004875!3.46e-07!18;UBERON:0005721!3.46e-07!18;UBERON:0005754!3.46e-07!18;UBERON:0007297!3.46e-07!18;UBERON:0006555!3.71e-07!17;UBERON:0005103!3.71e-07!17;UBERON:0000083!3.71e-07!17;UBERON:0009201!3.71e-07!17;UBERON:0004819!3.71e-07!17;UBERON:0006553!3.71e-07!17;UBERON:0003074!3.71e-07!17;UBERON:0003060!3.71e-07!17;UBERON:0001986!3.81e-07!18;UBERON:0004638!3.81e-07!18;UBERON:0004852!3.81e-07!18;UBERON:0004921!4.10e-07!129;UBERON:0004185!4.10e-07!129;UBERON:0000058!4.45e-07!26;UBERON:0004876!8.07e-07!20;UBERON:0001041!8.34e-07!98;UBERON:0003064!9.13e-07!37;UBERON:0000487!9.48e-07!22 | |ontology_enrichment_uberon=UBERON:0004119!7.94e-13!169;UBERON:0000925!7.94e-13!169;UBERON:0006595!7.94e-13!169;UBERON:0000464!2.94e-12!104;UBERON:0000466!1.82e-11!126;UBERON:0000119!7.94e-11!312;UBERON:0000483!2.09e-10!309;UBERON:0001048!2.75e-10!168;UBERON:0000922!5.42e-10!612;UBERON:0000468!1.67e-09!659;UBERON:0001004!4.60e-09!72;UBERON:0000481!6.28e-09!347;UBERON:0000477!6.40e-09!286;UBERON:0002050!6.44e-09!605;UBERON:0005423!6.44e-09!605;UBERON:0004111!9.10e-09!241;UBERON:0000923!1.04e-08!604;UBERON:0005291!1.04e-08!604;UBERON:0006598!1.04e-08!604;UBERON:0002532!1.04e-08!604;UBERON:0000077!1.45e-08!130;UBERON:0000064!1.91e-08!219;UBERON:0001007!3.76e-08!155;UBERON:0001555!3.76e-08!155;UBERON:0007026!3.76e-08!155;UBERON:0000467!1.02e-07!625;UBERON:0002553!1.24e-07!70;UBERON:0003104!1.26e-07!238;UBERON:0009142!1.26e-07!238;UBERON:0000480!1.40e-07!626;UBERON:0005631!1.82e-07!14;UBERON:0000158!1.82e-07!14;UBERON:0004211!2.24e-07!16;UBERON:0001285!2.24e-07!16;UBERON:0007684!2.24e-07!16;UBERON:0003220!2.24e-07!16;UBERON:0004208!2.24e-07!16;UBERON:0000065!3.25e-07!53;UBERON:0000080!3.46e-07!18;UBERON:0002120!3.46e-07!18;UBERON:0004875!3.46e-07!18;UBERON:0005721!3.46e-07!18;UBERON:0005754!3.46e-07!18;UBERON:0007297!3.46e-07!18;UBERON:0006555!3.71e-07!17;UBERON:0005103!3.71e-07!17;UBERON:0000083!3.71e-07!17;UBERON:0009201!3.71e-07!17;UBERON:0004819!3.71e-07!17;UBERON:0006553!3.71e-07!17;UBERON:0003074!3.71e-07!17;UBERON:0003060!3.71e-07!17;UBERON:0001986!3.81e-07!18;UBERON:0004638!3.81e-07!18;UBERON:0004852!3.81e-07!18;UBERON:0004921!4.10e-07!129;UBERON:0004185!4.10e-07!129;UBERON:0000058!4.45e-07!26;UBERON:0004876!8.07e-07!20;UBERON:0001041!8.34e-07!98;UBERON:0003064!9.13e-07!37;UBERON:0000487!9.48e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.37e-10;15!UBERON:0004819;5.37e-10;15!UBERON:0001285;5.37e-10;15!UBERON:0007684;5.37e-10;15!UBERON:0001225;2.56e-08;12!UBERON:0008987;2.56e-08;12!UBERON:0006554;5.69e-08;30!UBERON:0001008;5.69e-08;30!UBERON:0004638;1.08e-07;18!UBERON:0001986;1.08e-07;18!UBERON:0004852;1.08e-07;18!UBERON:0000487;1.26e-07;22!UBERON:0004211;1.28e-07;10!UBERON:0009773;1.28e-07;10!UBERON:0001231;1.28e-07;10!UBERON:0004810;1.28e-07;10!UBERON:0001851;5.09e-07;15!UBERON:0000490;6.08e-07;33!UBERON:0000353;9.28e-07;15 | |||
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| ||
|short_description=p1@MDFI | |short_description=p1@MDFI | ||
}} | }} |
Latest revision as of 18:45, 18 September 2015
Short description: | p1@MDFI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDFI_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000419164_5end |
EntrezGene: | MDFI |
HGNC: | 6967 |
UniProt: | B1AKB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.77e-37 | 253 |
endo-epithelial cell | 4.08e-15 | 42 |
squamous epithelial cell | 8.83e-15 | 63 |
embryonic cell | 1.19e-11 | 250 |
respiratory epithelial cell | 8.50e-11 | 13 |
epithelial cell of nephron | 4.92e-10 | 15 |
endodermal cell | 8.12e-10 | 58 |
endothelial cell | 1.64e-08 | 36 |
kidney cortical cell | 2.31e-08 | 12 |
renal cortical epithelial cell | 2.31e-08 | 12 |
meso-epithelial cell | 2.62e-08 | 45 |
kidney cell | 2.92e-08 | 17 |
kidney epithelial cell | 2.92e-08 | 17 |
epithelial cell of alimentary canal | 8.76e-08 | 20 |
blood vessel endothelial cell | 8.95e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.95e-08 | 18 |
kidney tubule cell | 1.36e-07 | 10 |
nephron tubule epithelial cell | 1.36e-07 | 10 |
epithelial cell of tracheobronchial tree | 2.03e-07 | 9 |
epithelial cell of lower respiratory tract | 2.03e-07 | 9 |
endothelial cell of vascular tree | 3.13e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 4.92e-10 | 15 |
renal tubule | 4.92e-10 | 15 |
nephron tubule | 4.92e-10 | 15 |
nephron | 4.92e-10 | 15 |
uriniferous tubule | 4.92e-10 | 15 |
nephrogenic mesenchyme | 4.92e-10 | 15 |
urinary system structure | 1.76e-09 | 47 |
extraembryonic membrane | 1.87e-09 | 14 |
membranous layer | 1.87e-09 | 14 |
excretory tube | 4.35e-09 | 16 |
kidney epithelium | 4.35e-09 | 16 |
renal system | 4.50e-09 | 48 |
cortex of kidney | 2.31e-08 | 12 |
renal parenchyma | 2.31e-08 | 12 |
endoderm-derived structure | 2.48e-08 | 160 |
endoderm | 2.48e-08 | 160 |
presumptive endoderm | 2.48e-08 | 160 |
blood vessel endothelium | 8.95e-08 | 18 |
endothelium | 8.95e-08 | 18 |
cardiovascular system endothelium | 8.95e-08 | 18 |
simple squamous epithelium | 1.03e-07 | 22 |
nephron tubule epithelium | 1.36e-07 | 10 |
head | 1.64e-07 | 56 |
chorion | 2.20e-07 | 7 |
respiratory system | 4.86e-07 | 74 |
cortex | 4.87e-07 | 15 |
anterior region of body | 6.43e-07 | 62 |
craniocervical region | 6.43e-07 | 62 |
parenchyma | 8.61e-07 | 15 |
trunk region element | 8.67e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.09e-09 | 14 |