FFCP PHASE1:Hg19::chr3:49907323..49907374,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79012 | |EntrezGene=79012 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28788 | |HGNC=28788 | ||
|TSSclassifier=strong | |||
|UniProt=C9J9E2,B4DSW8,E7ETR1,B4DM24,C9JSB2,F8WDJ4,Q8NCB2 | |UniProt=C9J9E2,B4DSW8,E7ETR1,B4DM24,C9JSB2,F8WDJ4,Q8NCB2 | ||
|association_with_transcript=0bp_to_ENST00000296471,ENST00000463537,ENST00000466535,ENST00000466940,ENST00000467248,ENST00000475665,ENST00000476105,ENST00000479704,ENST00000480398,ENST00000487726,ENST00000488336,ENST00000498324,NM_024046,uc003cxt.1,uc003cxu.2,uc003cxv.1,uc003cxw.1,uc003cxx.1,uc011bcy.1,uc011bcz.1,uc011bda.1,uc011bdb.1_5end | |association_with_transcript=0bp_to_ENST00000296471,ENST00000463537,ENST00000466535,ENST00000466940,ENST00000467248,ENST00000475665,ENST00000476105,ENST00000479704,ENST00000480398,ENST00000487726,ENST00000488336,ENST00000498324,NM_024046,uc003cxt.1,uc003cxu.2,uc003cxv.1,uc003cxw.1,uc003cxx.1,uc011bcy.1,uc011bcz.1,uc011bda.1,uc011bdb.1_5end | ||
|cluster_id=chr3:49907323..49907374,- | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_1_at_CAMKV_5end | |description=CAGE_peak_1_at_CAMKV_5end | ||
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|ontology_enrichment_celltype=CL:0002319!2.96e-10!25;CL:0000047!1.37e-08!8;CL:0000133!4.23e-07!59;CL:0000540!5.00e-07!6;CL:0000031!5.00e-07!6;CL:0000404!5.00e-07!6 | |ontology_enrichment_celltype=CL:0002319!2.96e-10!25;CL:0000047!1.37e-08!8;CL:0000133!4.23e-07!59;CL:0000540!5.00e-07!6;CL:0000031!5.00e-07!6;CL:0000404!5.00e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000540;7.26e-10;6!CL:0000404;7.26e-10;6!CL:0002321;1.21e-08;15!CL:0002322;5.92e-08;5!CL:0000333;7.11e-08;5 | |ontology_enrichment_celltype_v019=CL:0000540;7.26e-10;6!CL:0000404;7.26e-10;6!CL:0002321;1.21e-08;15!CL:0002322;5.92e-08;5!CL:0000333;7.11e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.17e-12,8;CL:0000540,7.26e-10,6;CL:0000031,7.26e-10,6;CL:0000404,7.26e-10,6;CL:0002322,6.06e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.48e-16;82!CL:0000031;7.26e-10;6 | |ontology_enrichment_development_v019=UBERON:0006601;1.48e-16;82!CL:0000031;7.26e-10;6 | ||
|ontology_enrichment_disease=DOID:3095!1.08e-09!22;DOID:2994!1.08e-09!22;DOID:171!3.97e-09!10 | |ontology_enrichment_disease=DOID:3095!1.08e-09!22;DOID:2994!1.08e-09!22;DOID:171!3.97e-09!10 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.99e-12;22!DOID:2994;7.99e-12;22!DOID:171;7.62e-11;10!DOID:169;7.98e-09;6 | |ontology_enrichment_disease_v019=DOID:3095;7.99e-12;22!DOID:2994;7.99e-12;22!DOID:171;7.62e-11;10!DOID:169;7.98e-09;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,7.89e-12,22;DOID:2994,7.89e-12,22;DOID:171,7.93e-11,10;DOID:169,8.47e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.36e-56!94;UBERON:0001016!2.36e-56!94;UBERON:0001017!1.56e-54!82;UBERON:0005743!6.81e-54!86;UBERON:0001049!5.93e-46!57;UBERON:0005068!5.93e-46!57;UBERON:0006241!5.93e-46!57;UBERON:0007135!5.93e-46!57;UBERON:0000955!1.70e-42!69;UBERON:0006238!1.70e-42!69;UBERON:0002780!4.86e-38!41;UBERON:0001890!4.86e-38!41;UBERON:0006240!4.86e-38!41;UBERON:0002616!8.73e-38!59;UBERON:0003080!9.86e-37!42;UBERON:0002346!1.72e-35!90;UBERON:0001893!1.23e-34!34;UBERON:0002020!1.73e-34!34;UBERON:0003528!1.73e-34!34;UBERON:0002791!1.28e-33!33;UBERON:0001869!2.35e-33!32;UBERON:0003075!1.26e-32!86;UBERON:0007284!1.26e-32!86;UBERON:0000924!2.91e-30!173;UBERON:0006601!2.91e-30!173;UBERON:0004121!7.54e-28!169;UBERON:0003056!2.83e-26!61;UBERON:0000956!6.64e-26!25;UBERON:0000203!6.64e-26!25;UBERON:0002619!9.69e-25!22;UBERON:0001950!1.23e-22!20;UBERON:0000033!4.07e-20!123;UBERON:0007023!3.62e-18!115;UBERON:0000153!4.00e-18!129;UBERON:0007811!4.00e-18!129;UBERON:0002420!2.13e-10!9;UBERON:0007245!2.13e-10!9;UBERON:0010009!2.13e-10!9;UBERON:0010011!2.13e-10!9;UBERON:0000454!2.13e-10!9;UBERON:0003076!2.93e-10!15;UBERON:0003057!2.93e-10!15;UBERON:0002308!6.08e-10!9;UBERON:0000125!6.08e-10!9;UBERON:0001871!2.30e-09!7;UBERON:0004732!1.82e-08!13;UBERON:0009663!2.60e-08!7;UBERON:0004733!8.06e-08!12;UBERON:0002028!8.06e-08!12;UBERON:0007277!8.06e-08!12;UBERON:0000200!1.23e-07!6;UBERON:0000025!6.11e-07!194;UBERON:0000349!7.32e-07!5 | |ontology_enrichment_uberon=UBERON:0000073!2.36e-56!94;UBERON:0001016!2.36e-56!94;UBERON:0001017!1.56e-54!82;UBERON:0005743!6.81e-54!86;UBERON:0001049!5.93e-46!57;UBERON:0005068!5.93e-46!57;UBERON:0006241!5.93e-46!57;UBERON:0007135!5.93e-46!57;UBERON:0000955!1.70e-42!69;UBERON:0006238!1.70e-42!69;UBERON:0002780!4.86e-38!41;UBERON:0001890!4.86e-38!41;UBERON:0006240!4.86e-38!41;UBERON:0002616!8.73e-38!59;UBERON:0003080!9.86e-37!42;UBERON:0002346!1.72e-35!90;UBERON:0001893!1.23e-34!34;UBERON:0002020!1.73e-34!34;UBERON:0003528!1.73e-34!34;UBERON:0002791!1.28e-33!33;UBERON:0001869!2.35e-33!32;UBERON:0003075!1.26e-32!86;UBERON:0007284!1.26e-32!86;UBERON:0000924!2.91e-30!173;UBERON:0006601!2.91e-30!173;UBERON:0004121!7.54e-28!169;UBERON:0003056!2.83e-26!61;UBERON:0000956!6.64e-26!25;UBERON:0000203!6.64e-26!25;UBERON:0002619!9.69e-25!22;UBERON:0001950!1.23e-22!20;UBERON:0000033!4.07e-20!123;UBERON:0007023!3.62e-18!115;UBERON:0000153!4.00e-18!129;UBERON:0007811!4.00e-18!129;UBERON:0002420!2.13e-10!9;UBERON:0007245!2.13e-10!9;UBERON:0010009!2.13e-10!9;UBERON:0010011!2.13e-10!9;UBERON:0000454!2.13e-10!9;UBERON:0003076!2.93e-10!15;UBERON:0003057!2.93e-10!15;UBERON:0002308!6.08e-10!9;UBERON:0000125!6.08e-10!9;UBERON:0001871!2.30e-09!7;UBERON:0004732!1.82e-08!13;UBERON:0009663!2.60e-08!7;UBERON:0004733!8.06e-08!12;UBERON:0002028!8.06e-08!12;UBERON:0007277!8.06e-08!12;UBERON:0000200!1.23e-07!6;UBERON:0000025!6.11e-07!194;UBERON:0000349!7.32e-07!5 | ||
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| ||
|short_description=p1@CAMKV | |short_description=p1@CAMKV | ||
}} | }} |
Latest revision as of 17:42, 18 September 2015
Short description: | p1@CAMKV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAMKV_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000296471, ENST00000463537, ENST00000466535, ENST00000466940, ENST00000467248, ENST00000475665, ENST00000476105, ENST00000479704, ENST00000480398, ENST00000487726, ENST00000488336, ENST00000498324, NM_024046, uc003cxt.1, uc003cxu.2, uc003cxv.1, uc003cxw.1, uc003cxx.1, uc011bcy.1, uc011bcz.1, uc011bda.1, uc011bdb.1_5end |
EntrezGene: | CAMKV |
HGNC: | 28788 |
UniProt: | C9J9E2B4DSW8E7ETR1B4DM24C9JSB2F8WDJ4Q8NCB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.17e-12 | 8 |
neuron | 7.26e-10 | 6 |
neuroblast | 7.26e-10 | 6 |
electrically signaling cell | 7.26e-10 | 6 |
embryonic stem cell | 6.06e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.89e-12 | 22 |
germ cell cancer | 7.89e-12 | 22 |
neuroectodermal tumor | 7.93e-11 | 10 |
neuroendocrine tumor | 8.47e-09 | 6 |