FFCP PHASE1:Hg19::chr17:80709720..80709787,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6904 | |EntrezGene=6904 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11581 | |HGNC=11581 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BTW9,A6NE57 | |UniProt=Q9BTW9,A6NE57 | ||
|association_with_transcript=-152bp_to_ENST00000355528,NM_005993,uc002kfx.1,uc002kfy.1,uc002kfz.2_5end | |association_with_transcript=-152bp_to_ENST00000355528,NM_005993,uc002kfx.1,uc002kfy.1,uc002kfz.2_5end | ||
|cluster_id=chr17:80709720..80709787,+ | |||
|description=CAGE_peak_2_at_TBCD_5end | |description=CAGE_peak_2_at_TBCD_5end | ||
|id=chr17:80709720..80709787,+ | |id=chr17:80709720..80709787,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.24e-13!254;CL:0002321!4.58e-10!248;CL:0000220!2.05e-09!246;CL:0000221!1.18e-07!71;CL:0000133!1.81e-07!59;CL:1000497!3.97e-07!18;CL:0002518!3.97e-07!18;CL:1000449!7.60e-07!16;CL:0000333!8.49e-07!41 | |ontology_enrichment_celltype=CL:0000066!1.24e-13!254;CL:0002321!4.58e-10!248;CL:0000220!2.05e-09!246;CL:0000221!1.18e-07!71;CL:0000133!1.81e-07!59;CL:1000497!3.97e-07!18;CL:0002518!3.97e-07!18;CL:1000449!7.60e-07!16;CL:0000333!8.49e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.60e-08;15!CL:1000497;6.69e-08;17!CL:0002518;6.69e-08;17 | |ontology_enrichment_celltype_v019=CL:1000449;1.60e-08;15!CL:1000497;6.69e-08;17!CL:0002518;6.69e-08;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.51e-13,253;CL:0000221,6.68e-09,72;CL:1000449,7.26e-09,15;CL:0000133,1.46e-08,59;CL:1000497,1.88e-08,17;CL:0002518,1.88e-08,17;CL:0002321,3.80e-08,250;CL:0000333,1.96e-07,41;CL:0002681,8.66e-07,12;CL:0002584,8.66e-07,12 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.02e-11!235;DOID:14566!2.40e-11!239;DOID:0050687!3.69e-08!143 | |ontology_enrichment_disease=DOID:162!1.02e-11!235;DOID:14566!2.40e-11!239;DOID:0050687!3.69e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,2.37e-10,235;DOID:14566,5.08e-10,239;DOID:0050687,1.50e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0002113!9.22e-08!27;UBERON:0003918!9.22e-08!27;UBERON:0005095!9.22e-08!27;UBERON:0007687!9.22e-08!27;UBERON:0000475!2.07e-07!365;UBERON:0000489!2.90e-07!32;UBERON:0009569!5.34e-07!113;UBERON:0000119!5.82e-07!312;UBERON:0004211!7.60e-07!16;UBERON:0001285!7.60e-07!16;UBERON:0007684!7.60e-07!16;UBERON:0003220!7.60e-07!16;UBERON:0004208!7.60e-07!16 | |ontology_enrichment_uberon=UBERON:0002113!9.22e-08!27;UBERON:0003918!9.22e-08!27;UBERON:0005095!9.22e-08!27;UBERON:0007687!9.22e-08!27;UBERON:0000475!2.07e-07!365;UBERON:0000489!2.90e-07!32;UBERON:0009569!5.34e-07!113;UBERON:0000119!5.82e-07!312;UBERON:0004211!7.60e-07!16;UBERON:0001285!7.60e-07!16;UBERON:0007684!7.60e-07!16;UBERON:0003220!7.60e-07!16;UBERON:0004208!7.60e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.60e-08;15!UBERON:0004819;1.60e-08;15!UBERON:0001285;1.60e-08;15!UBERON:0007684;1.60e-08;15!UBERON:0002113;2.89e-08;24!UBERON:0011143;2.89e-08;24!UBERON:0000489;2.33e-07;29!UBERON:0006554;4.00e-07;30!UBERON:0001008;4.00e-07;30 | |ontology_enrichment_uberon_v019=UBERON:0006555;1.60e-08;15!UBERON:0004819;1.60e-08;15!UBERON:0001285;1.60e-08;15!UBERON:0007684;1.60e-08;15!UBERON:0002113;2.89e-08;24!UBERON:0011143;2.89e-08;24!UBERON:0000489;2.33e-07;29!UBERON:0006554;4.00e-07;30!UBERON:0001008;4.00e-07;30 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,7.26e-09,15;UBERON:0009773,7.26e-09,15;UBERON:0001231,7.26e-09,15;UBERON:0001285,7.26e-09,15;UBERON:0007684,7.26e-09,15;UBERON:0004208,7.26e-09,15;UBERON:0006555,5.48e-08,16;UBERON:0004819,5.48e-08,16;UBERON:0002113,1.55e-07,26;UBERON:0003918,1.55e-07,26;UBERON:0011143,1.55e-07,26;UBERON:0005095,1.55e-07,26;UBERON:0007687,1.55e-07,26;UBERON:0000489,6.32e-07,31;UBERON:0001225,8.66e-07,12;UBERON:0008987,8.66e-07,12 | |||
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| ||
|short_description=p2@TBCD | |short_description=p2@TBCD | ||
}} | }} |
Latest revision as of 14:00, 18 September 2015
Short description: | p2@TBCD |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TBCD_5end |
Coexpression cluster: | NA |
Association with transcript: | -152bp_to_ENST00000355528, NM_005993, uc002kfx.1, uc002kfy.1, uc002kfz.2_5end |
EntrezGene: | TBCD |
HGNC: | 11581 |
UniProt: | Q9BTW9A6NE57 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.51e-13 | 253 |
ectodermal cell | 6.68e-09 | 72 |
epithelial cell of nephron | 7.26e-09 | 15 |
neurectodermal cell | 1.46e-08 | 59 |
kidney cell | 1.88e-08 | 17 |
kidney epithelial cell | 1.88e-08 | 17 |
embryonic cell | 3.80e-08 | 250 |
migratory neural crest cell | 1.96e-07 | 41 |
kidney cortical cell | 8.66e-07 | 12 |
renal cortical epithelial cell | 8.66e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 7.26e-09 | 15 |
renal tubule | 7.26e-09 | 15 |
nephron tubule | 7.26e-09 | 15 |
nephron | 7.26e-09 | 15 |
uriniferous tubule | 7.26e-09 | 15 |
nephrogenic mesenchyme | 7.26e-09 | 15 |
excretory tube | 5.48e-08 | 16 |
kidney epithelium | 5.48e-08 | 16 |
kidney | 1.55e-07 | 26 |
kidney mesenchyme | 1.55e-07 | 26 |
upper urinary tract | 1.55e-07 | 26 |
kidney rudiment | 1.55e-07 | 26 |
kidney field | 1.55e-07 | 26 |
cavitated compound organ | 6.32e-07 | 31 |
cortex of kidney | 8.66e-07 | 12 |
renal parenchyma | 8.66e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.37e-10 | 235 |
disease of cellular proliferation | 5.08e-10 | 239 |
cell type cancer | 1.50e-07 | 143 |