FFCP PHASE1:Hg19::chr7:29924180..29924187,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=644150 | |EntrezGene=644150 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=22004 | |HGNC=22004 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=408bp_to_AK094250_5end | |association_with_transcript=408bp_to_AK094250_5end | ||
|cluster_id=chr7:29924180..29924187,+ | |||
|description=CAGE_peak_21_at_WIPF3_5end | |description=CAGE_peak_21_at_WIPF3_5end | ||
|id=chr7:29924180..29924187,+ | |id=chr7:29924180..29924187,+ | ||
|ontology_enrichment_celltype=CL:0002322!3.51e-18!5 | |ontology_enrichment_celltype=CL:0002322!3.51e-18!5 | ||
|ontology_enrichment_celltype_v019=CL:0000047;9.07e-18;2!CL:0002322;6.55e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.49e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.59e-12;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.22e-48!57;UBERON:0005068!1.22e-48!57;UBERON:0006241!1.22e-48!57;UBERON:0007135!1.22e-48!57;UBERON:0002616!1.74e-43!59;UBERON:0002780!3.00e-40!41;UBERON:0001890!3.00e-40!41;UBERON:0006240!3.00e-40!41;UBERON:0003080!3.66e-39!42;UBERON:0005743!9.90e-39!86;UBERON:0001017!1.41e-38!82;UBERON:0000955!3.32e-38!69;UBERON:0006238!3.32e-38!69;UBERON:0001869!1.40e-35!32;UBERON:0000073!2.71e-34!94;UBERON:0001016!2.71e-34!94;UBERON:0003075!3.66e-34!86;UBERON:0007284!3.66e-34!86;UBERON:0001893!3.03e-33!34;UBERON:0002020!3.08e-33!34;UBERON:0003528!3.08e-33!34;UBERON:0002346!2.78e-32!90;UBERON:0002791!8.03e-31!33;UBERON:0007023!1.09e-30!115;UBERON:0003056!4.92e-30!61;UBERON:0001950!6.02e-28!20;UBERON:0000033!8.33e-28!123;UBERON:0000153!4.20e-26!129;UBERON:0007811!4.20e-26!129;UBERON:0000956!2.34e-25!25;UBERON:0000203!2.34e-25!25;UBERON:0002619!3.21e-25!22;UBERON:0004121!4.23e-19!169;UBERON:0000924!1.88e-18!173;UBERON:0006601!1.88e-18!173;UBERON:0003296!1.48e-14!4;UBERON:0010133!1.48e-14!4;UBERON:0000200!1.30e-13!6;UBERON:0002021!2.11e-11!5;UBERON:0003076!1.58e-10!15;UBERON:0003057!1.58e-10!15;UBERON:0004733!5.24e-10!12;UBERON:0002028!5.24e-10!12;UBERON:0007277!5.24e-10!12;UBERON:0002680!1.49e-09!9;UBERON:0001895!1.49e-09!9;UBERON:0010092!1.49e-09!9;UBERON:0002308!2.96e-09!9;UBERON:0000125!2.96e-09!9;UBERON:0004732!3.51e-09!13;UBERON:0002420!3.59e-09!9;UBERON:0007245!3.59e-09!9;UBERON:0010009!3.59e-09!9;UBERON:0010011!3.59e-09!9;UBERON:0000454!3.59e-09!9;UBERON:0000025!5.68e-09!194;UBERON:0004111!1.71e-08!241;UBERON:0001894!2.58e-08!7;UBERON:0006222!2.58e-08!7;UBERON:0001905!2.59e-08!2;UBERON:0002757!2.59e-08!2;UBERON:0010134!2.59e-08!2;UBERON:0002784!2.59e-08!2;UBERON:0005408!2.59e-08!2;UBERON:0001899!2.59e-08!2;UBERON:0001870!3.44e-08!2;UBERON:0000369!4.22e-08!4;UBERON:0002435!4.22e-08!4;UBERON:0000204!4.22e-08!4;UBERON:0010082!4.22e-08!4;UBERON:0009663!5.55e-08!7;UBERON:0000007!6.20e-08!2;UBERON:0000064!1.24e-07!219;UBERON:0000477!4.38e-07!286;UBERON:0000475!9.78e-07!365 | |ontology_enrichment_uberon=UBERON:0001049!1.22e-48!57;UBERON:0005068!1.22e-48!57;UBERON:0006241!1.22e-48!57;UBERON:0007135!1.22e-48!57;UBERON:0002616!1.74e-43!59;UBERON:0002780!3.00e-40!41;UBERON:0001890!3.00e-40!41;UBERON:0006240!3.00e-40!41;UBERON:0003080!3.66e-39!42;UBERON:0005743!9.90e-39!86;UBERON:0001017!1.41e-38!82;UBERON:0000955!3.32e-38!69;UBERON:0006238!3.32e-38!69;UBERON:0001869!1.40e-35!32;UBERON:0000073!2.71e-34!94;UBERON:0001016!2.71e-34!94;UBERON:0003075!3.66e-34!86;UBERON:0007284!3.66e-34!86;UBERON:0001893!3.03e-33!34;UBERON:0002020!3.08e-33!34;UBERON:0003528!3.08e-33!34;UBERON:0002346!2.78e-32!90;UBERON:0002791!8.03e-31!33;UBERON:0007023!1.09e-30!115;UBERON:0003056!4.92e-30!61;UBERON:0001950!6.02e-28!20;UBERON:0000033!8.33e-28!123;UBERON:0000153!4.20e-26!129;UBERON:0007811!4.20e-26!129;UBERON:0000956!2.34e-25!25;UBERON:0000203!2.34e-25!25;UBERON:0002619!3.21e-25!22;UBERON:0004121!4.23e-19!169;UBERON:0000924!1.88e-18!173;UBERON:0006601!1.88e-18!173;UBERON:0003296!1.48e-14!4;UBERON:0010133!1.48e-14!4;UBERON:0000200!1.30e-13!6;UBERON:0002021!2.11e-11!5;UBERON:0003076!1.58e-10!15;UBERON:0003057!1.58e-10!15;UBERON:0004733!5.24e-10!12;UBERON:0002028!5.24e-10!12;UBERON:0007277!5.24e-10!12;UBERON:0002680!1.49e-09!9;UBERON:0001895!1.49e-09!9;UBERON:0010092!1.49e-09!9;UBERON:0002308!2.96e-09!9;UBERON:0000125!2.96e-09!9;UBERON:0004732!3.51e-09!13;UBERON:0002420!3.59e-09!9;UBERON:0007245!3.59e-09!9;UBERON:0010009!3.59e-09!9;UBERON:0010011!3.59e-09!9;UBERON:0000454!3.59e-09!9;UBERON:0000025!5.68e-09!194;UBERON:0004111!1.71e-08!241;UBERON:0001894!2.58e-08!7;UBERON:0006222!2.58e-08!7;UBERON:0001905!2.59e-08!2;UBERON:0002757!2.59e-08!2;UBERON:0010134!2.59e-08!2;UBERON:0002784!2.59e-08!2;UBERON:0005408!2.59e-08!2;UBERON:0001899!2.59e-08!2;UBERON:0001870!3.44e-08!2;UBERON:0000369!4.22e-08!4;UBERON:0002435!4.22e-08!4;UBERON:0000204!4.22e-08!4;UBERON:0010082!4.22e-08!4;UBERON:0009663!5.55e-08!7;UBERON:0000007!6.20e-08!2;UBERON:0000064!1.24e-07!219;UBERON:0000477!4.38e-07!286;UBERON:0000475!9.78e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;9.07e-18;2!UBERON:0002757;9.07e-18;2!UBERON:0010134;9.07e-18;2!UBERON:0005408;9.07e-18;2!UBERON:0001899;9.07e-18;2!UBERON:0002680;1.22e-15;9!UBERON:0001895;1.22e-15;9!UBERON:0000988;2.59e-12;3!UBERON:0004733;5.37e-12;12!UBERON:0002028;5.37e-12;12!UBERON:0004732;3.75e-11;13!UBERON:0003296;1.44e-09;4!UBERON:0010133;1.44e-09;4!UBERON:0002784;1.44e-09;4!UBERON:0002021;5.35e-08;5!UBERON:0000073;6.22e-07;53!UBERON:0002616;6.22e-07;53!UBERON:0002037;8.48e-07;6!UBERON:0002298;8.48e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.48e-18,2;UBERON:0002757,6.48e-18,2;UBERON:0010134,6.48e-18,2;UBERON:0005408,6.48e-18,2;UBERON:0001899,6.48e-18,2;UBERON:0002680,1.22e-15,9;UBERON:0001895,1.22e-15,9;UBERON:0010092,1.22e-15,9;UBERON:0000988,2.89e-12,3;UBERON:0004733,5.37e-12,12;UBERON:0002028,5.37e-12,12;UBERON:0007277,5.37e-12,12;UBERON:0004732,3.75e-11,13;UBERON:0001017,2.00e-10,81;UBERON:0000073,2.17e-10,53;UBERON:0002616,2.17e-10,53;UBERON:0001049,7.17e-10,56;UBERON:0005068,7.17e-10,56;UBERON:0006241,7.17e-10,56;UBERON:0007135,7.17e-10,56;UBERON:0003076,8.46e-10,15;UBERON:0003057,8.46e-10,15;UBERON:0003296,1.22e-09,4;UBERON:0010133,1.22e-09,4;UBERON:0002784,1.22e-09,4;UBERON:0001016,1.91e-09,89;UBERON:0000955,3.92e-08,68;UBERON:0006238,3.92e-08,68;UBERON:0002021,5.35e-08,5;UBERON:0003075,6.23e-07,82;UBERON:0007284,6.23e-07,82;UBERON:0002037,8.02e-07,6;UBERON:0006215,8.02e-07,6;UBERON:0002298,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.609868530647977,0.662648841607426,0.69716365721711,0.310983165046111,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.120596438625408,1.52581736317083,0.221158519862449,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.825236619583403,0,0,0,0.121499113316049,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,2.8339315265117,0,0.205116364240755,0.252071696221718,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.317079050969534,0,0,0,0,0,1.60710550763486,0.336283722218824,0.606965604236632,0.227662191351298,0,0,0,1.2914249265598,0.131545547125698,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.609868530647977,0.662648841607426,0.69716365721711,0.310983165046111,1.00928340350251,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.120596438625408,1.52581736317083,0.221158519862449,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.825236619583403,0,0,0,0.121499113316049,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,2.8339315265117,0,0.205116364240755,0.252071696221718,0.484100767249525,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.317079050969534,0,0,0,0,0,1.60710550763486,0.336283722218824,0.606965604236632,0.227662191351298,0,0,0,1.2914249265598,0.131545547125698,0,0,0.078493092850514,0.314231179832004,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p21@WIPF3 | |short_description=p21@WIPF3 | ||
}} | }} |
Latest revision as of 04:57, 18 September 2015
Short description: | p21@WIPF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_WIPF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 408bp_to_AK094250_5end |
EntrezGene: | WIPF3 |
HGNC: | 22004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.49e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
pineal body | 6.48e-18 | 2 |
regional part of epithalamus | 6.48e-18 | 2 |
secretory circumventricular organ | 6.48e-18 | 2 |
circumventricular organ | 6.48e-18 | 2 |
epithalamus | 6.48e-18 | 2 |
regional part of metencephalon | 1.22e-15 | 9 |
metencephalon | 1.22e-15 | 9 |
future metencephalon | 1.22e-15 | 9 |
pons | 2.89e-12 | 3 |
segmental subdivision of hindbrain | 5.37e-12 | 12 |
hindbrain | 5.37e-12 | 12 |
presumptive hindbrain | 5.37e-12 | 12 |
segmental subdivision of nervous system | 3.75e-11 | 13 |
central nervous system | 2.00e-10 | 81 |
regional part of nervous system | 2.17e-10 | 53 |
regional part of brain | 2.17e-10 | 53 |
neural tube | 7.17e-10 | 56 |
neural rod | 7.17e-10 | 56 |
future spinal cord | 7.17e-10 | 56 |
neural keel | 7.17e-10 | 56 |
posterior neural tube | 8.46e-10 | 15 |
chordal neural plate | 8.46e-10 | 15 |
gland of diencephalon | 1.22e-09 | 4 |
neuroendocrine gland | 1.22e-09 | 4 |
regional part of diencephalon | 1.22e-09 | 4 |
nervous system | 1.91e-09 | 89 |
brain | 3.92e-08 | 68 |
future brain | 3.92e-08 | 68 |
occipital lobe | 5.35e-08 | 5 |
neural plate | 6.23e-07 | 82 |
presumptive neural plate | 6.23e-07 | 82 |
cerebellum | 8.02e-07 | 6 |
rhombic lip | 8.02e-07 | 6 |
brainstem | 8.97e-07 | 6 |