FFCP PHASE1:Hg19::chr9:91793987..91794052,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:91793987..91794052,- to FFCP PHASE1:Hg19::chr9:91793987..91794052,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=53358 | |EntrezGene=53358 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18181 | |HGNC=18181 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T7I8,Q92529 | |UniProt=Q5T7I8,Q92529 | ||
|association_with_transcript=-305bp_to_ENST00000375830,ENST00000375835,NM_016848,uc004aqg.2_5end | |||
|cluster_id=chr9:91793987..91794052,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_SHC3_5end | |||
|id=chr9:91793987..91794052,- | |||
|ontology_enrichment_celltype=CL:0000047!1.93e-11!8;CL:0000540!1.39e-08!6;CL:0000031!1.39e-08!6;CL:0000404!1.39e-08!6;CL:0002319!7.60e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.19e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,6.87e-10,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.38e-16;82!UBERON:0010122;3.31e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.51e-64!82;UBERON:0005743!1.49e-62!86;UBERON:0001049!2.45e-60!57;UBERON:0005068!2.45e-60!57;UBERON:0006241!2.45e-60!57;UBERON:0007135!2.45e-60!57;UBERON:0000073!2.71e-60!94;UBERON:0001016!2.71e-60!94;UBERON:0002780!8.39e-51!41;UBERON:0001890!8.39e-51!41;UBERON:0006240!8.39e-51!41;UBERON:0002616!3.26e-50!59;UBERON:0003080!2.82e-49!42;UBERON:0000955!4.72e-48!69;UBERON:0006238!4.72e-48!69;UBERON:0001893!9.86e-48!34;UBERON:0002020!1.79e-47!34;UBERON:0003528!1.79e-47!34;UBERON:0002791!3.81e-46!33;UBERON:0001869!3.00e-45!32;UBERON:0007023!2.74e-43!115;UBERON:0003075!4.57e-39!86;UBERON:0007284!4.57e-39!86;UBERON:0002346!1.61e-36!90;UBERON:0000956!1.89e-35!25;UBERON:0000203!1.89e-35!25;UBERON:0002619!1.51e-32!22;UBERON:0003056!2.23e-31!61;UBERON:0001950!1.30e-29!20;UBERON:0004121!4.52e-27!169;UBERON:0000924!6.09e-26!173;UBERON:0006601!6.09e-26!173;UBERON:0000033!4.43e-25!123;UBERON:0000153!4.38e-23!129;UBERON:0007811!4.38e-23!129;UBERON:0004111!2.57e-16!241;UBERON:0000025!8.34e-16!194;UBERON:0002420!1.36e-13!9;UBERON:0007245!1.36e-13!9;UBERON:0010009!1.36e-13!9;UBERON:0010011!1.36e-13!9;UBERON:0000454!1.36e-13!9;UBERON:0002308!2.98e-13!9;UBERON:0000125!2.98e-13!9;UBERON:0003076!4.16e-12!15;UBERON:0003057!4.16e-12!15;UBERON:0000477!4.25e-11!286;UBERON:0000200!1.05e-10!6;UBERON:0009663!1.14e-10!7;UBERON:0001871!2.67e-10!7;UBERON:0001872!2.78e-09!5;UBERON:0000483!4.85e-09!309;UBERON:0000349!5.58e-09!5;UBERON:0002298!6.86e-09!8;UBERON:0002021!8.00e-09!5;UBERON:0000475!8.51e-09!365;UBERON:0003101!8.74e-09!22;UBERON:0000079!8.74e-09!22;UBERON:0000119!9.07e-09!312;UBERON:0000922!9.09e-09!612;UBERON:0004733!1.09e-08!12;UBERON:0002028!1.09e-08!12;UBERON:0007277!1.09e-08!12;UBERON:0000923!5.70e-08!604;UBERON:0005291!5.70e-08!604;UBERON:0006598!5.70e-08!604;UBERON:0002532!5.70e-08!604;UBERON:0002050!6.61e-08!605;UBERON:0005423!6.61e-08!605;UBERON:0004732!7.41e-08!13;UBERON:0000369!3.19e-07!4;UBERON:0002435!3.19e-07!4;UBERON:0000204!3.19e-07!4;UBERON:0010082!3.19e-07!4;UBERON:0003135!5.11e-07!11;UBERON:0000481!5.94e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.50e-66;22!UBERON:0001869;6.64e-65;32!UBERON:0003528;2.05e-63;34!UBERON:0002020;2.05e-63;34!UBERON:0001893;2.85e-63;34!UBERON:0002791;1.73e-60;32!UBERON:0001950;3.11e-60;20!UBERON:0000956;6.06e-58;25!UBERON:0000203;6.06e-58;25!UBERON:0002780;8.09e-55;41!UBERON:0001890;8.09e-55;41!UBERON:0000073;1.80e-48;53!UBERON:0002616;1.80e-48;53!UBERON:0000955;3.19e-36;68!UBERON:0001017;9.54e-36;75!UBERON:0001016;5.09e-28;83!UBERON:0000200;2.03e-20;6!UBERON:0002298;1.29e-17;6!UBERON:0001872;1.78e-17;5!UBERON:0001871;4.16e-17;6!UBERON:0000349;8.02e-17;5!UBERON:0002420;9.21e-17;9!UBERON:0007245;9.21e-17;9!UBERON:0010009;9.21e-17;9!UBERON:0010011;9.21e-17;9!UBERON:0000454;9.21e-17;9!UBERON:0002021;1.60e-16;5!UBERON:0000125;3.08e-16;9!UBERON:0002308;3.08e-16;9!UBERON:0000369;3.16e-13;4!UBERON:0002435;3.16e-13;4!UBERON:0000204;3.16e-13;4!UBERON:0007023;4.19e-13;114!UBERON:0011216;1.44e-11;132!UBERON:0004733;2.22e-11;12!UBERON:0002028;2.22e-11;12!UBERON:0009663;3.35e-11;7!UBERON:0001870;5.41e-11;3!UBERON:0004732;1.99e-10;13!UBERON:0005383;3.92e-10;3!UBERON:0005382;3.92e-10;3!UBERON:0000988;7.10e-10;3!UBERON:0001896;1.89e-09;3!UBERON:0005290;1.89e-09;3!UBERON:0002771;5.18e-08;2!UBERON:0001876;9.27e-08;2!UBERON:0002702;9.27e-08;2!UBERON:0001954;1.19e-07;2!UBERON:0003022;1.19e-07;2!UBERON:0002421;1.19e-07;2!UBERON:0002600;1.19e-07;2!UBERON:0010314;3.23e-07;132!UBERON:0001873;3.31e-07;2!UBERON:0002148;4.67e-07;2!UBERON:0006331;4.67e-07;2!UBERON:0009662;4.67e-07;2!UBERON:0002784;4.92e-07;4!UBERON:0001894;7.13e-07;7!UBERON:0001897;9.61e-07;2!UBERON:0010225;9.61e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.45e-90,81;UBERON:0001049,3.40e-90,56;UBERON:0005068,3.40e-90,56;UBERON:0006241,3.40e-90,56;UBERON:0007135,3.40e-90,56;UBERON:0000073,1.51e-86,53;UBERON:0002616,1.51e-86,53;UBERON:0001016,1.21e-83,89;UBERON:0002780,2.34e-77,41;UBERON:0001890,2.34e-77,41;UBERON:0003080,2.34e-77,41;UBERON:0006240,2.34e-77,41;UBERON:0000955,1.46e-75,68;UBERON:0006238,1.46e-75,68;UBERON:0001893,2.06e-73,34;UBERON:0001869,5.14e-73,32;UBERON:0003528,6.06e-73,34;UBERON:0002020,6.06e-73,34;UBERON:0002791,1.76e-67,32;UBERON:0002619,2.43e-66,22;UBERON:0001950,3.17e-60,20;UBERON:0003075,1.59e-58,82;UBERON:0007284,1.59e-58,82;UBERON:0000956,5.90e-58,25;UBERON:0000203,5.90e-58,25;UBERON:0002346,2.47e-55,86;UBERON:0003056,1.85e-49,61;UBERON:0010371,5.51e-44,104;UBERON:0007023,6.47e-42,114;UBERON:0004121,2.13e-38,171;UBERON:0000924,2.13e-38,171;UBERON:0006601,2.13e-38,171;UBERON:0010314,1.95e-34,132;UBERON:0011216,9.26e-31,223;UBERON:0000200,2.06e-20,6;UBERON:0000025,4.67e-19,192;UBERON:0002298,1.55e-17,6;UBERON:0001872,1.78e-17,5;UBERON:0001871,4.40e-17,6;UBERON:0000349,7.52e-17,5;UBERON:0002420,9.21e-17,9;UBERON:0007245,9.21e-17,9;UBERON:0010009,9.21e-17,9;UBERON:0010011,9.21e-17,9;UBERON:0000454,9.21e-17,9;UBERON:0002021,1.58e-16,5;UBERON:0000125,3.27e-16,9;UBERON:0002308,3.27e-16,9;UBERON:0003076,1.18e-14,15;UBERON:0003057,1.18e-14,15;UBERON:0004111,4.48e-14,240;UBERON:0000369,3.07e-13,4;UBERON:0002435,3.07e-13,4;UBERON:0000204,3.07e-13,4;UBERON:0010082,3.07e-13,4;UBERON:0004733,2.34e-11,12;UBERON:0002028,2.34e-11,12;UBERON:0007277,2.34e-11,12;UBERON:0009663,3.35e-11,7;UBERON:0001870,5.24e-11,3;UBERON:0004732,2.08e-10,13;UBERON:0005383,3.86e-10,3;UBERON:0005382,3.86e-10,3;UBERON:0000988,7.67e-10,3;UBERON:0001896,2.10e-09,3;UBERON:0005290,2.10e-09,3;UBERON:0010096,2.10e-09,3;UBERON:0000483,7.38e-09,306;UBERON:0000119,1.12e-08,309;UBERON:0002771,5.45e-08,2;UBERON:0000923,5.82e-08,560;UBERON:0010316,5.82e-08,560;UBERON:0005291,5.82e-08,560;UBERON:0006598,5.82e-08,560;UBERON:0010317,5.82e-08,560;UBERON:0002532,5.82e-08,560;UBERON:0002050,8.25e-08,564;UBERON:0001876,9.27e-08,2;UBERON:0002702,9.27e-08,2;UBERON:0001954,1.13e-07,2;UBERON:0003022,1.13e-07,2;UBERON:0002421,1.13e-07,2;UBERON:0002600,1.13e-07,2;UBERON:0001873,3.26e-07,2;UBERON:0010122,3.26e-07,2;UBERON:0005423,3.46e-07,581;UBERON:0002148,5.05e-07,2;UBERON:0006331,5.05e-07,2;UBERON:0009662,5.05e-07,2;UBERON:0002784,5.73e-07,4;UBERON:0001894,7.80e-07,7;UBERON:0006222,7.80e-07,7;UBERON:0000922,8.36e-07,592 | |||
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|short_description=p3@SHC3 | |||
}} | }} |
Latest revision as of 04:33, 18 September 2015
Short description: | p3@SHC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHC3_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -305bp_to_ENST00000375830, ENST00000375835, NM_016848, uc004aqg.2_5end |
EntrezGene: | SHC3 |
HGNC: | 18181 |
UniProt: | Q5T7I8Q92529 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 6.87e-10 | 8 |