FFCP PHASE1:Hg19::chr1:43824639..43824659,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=991 | |EntrezGene=991 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1723 | |HGNC=1723 | ||
|TSSclassifier=strong | |||
|UniProt=Q12834 | |UniProt=Q12834 | ||
|association_with_transcript=13bp_to_ENST00000310955,NM_001255,uc001cix.2_5end | |association_with_transcript=13bp_to_ENST00000310955,NM_001255,uc001cix.2_5end | ||
|cluster_id=chr1:43824639..43824659,+ | |||
|coexpression_cluster_id=C2586 | |coexpression_cluster_id=C2586 | ||
|description=CAGE_peak_1_at_CDC20_5end | |description=CAGE_peak_1_at_CDC20_5end | ||
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|ontology_enrichment_celltype=CL:0000548!4.58e-26!679;CL:0000004!4.58e-26!679;CL:0000255!4.58e-26!679;CL:0000012!1.41e-25!682;CL:0000066!4.38e-23!254;CL:0002321!1.11e-17!248;CL:0000220!3.05e-17!246;CL:0000003!4.67e-14!722;CL:0000144!4.16e-13!625;CL:0000055!1.30e-12!180;CL:0000063!6.93e-11!578;CL:0000076!1.09e-10!62;CL:0000222!8.40e-10!119;CL:0002371!1.09e-08!591;CL:0000213!1.50e-07!57;CL:0000215!1.50e-07!57;CL:0000057!2.95e-07!75;CL:1000449!5.08e-07!16 | |ontology_enrichment_celltype=CL:0000548!4.58e-26!679;CL:0000004!4.58e-26!679;CL:0000255!4.58e-26!679;CL:0000012!1.41e-25!682;CL:0000066!4.38e-23!254;CL:0002321!1.11e-17!248;CL:0000220!3.05e-17!246;CL:0000003!4.67e-14!722;CL:0000144!4.16e-13!625;CL:0000055!1.30e-12!180;CL:0000063!6.93e-11!578;CL:0000076!1.09e-10!62;CL:0000222!8.40e-10!119;CL:0002371!1.09e-08!591;CL:0000213!1.50e-07!57;CL:0000215!1.50e-07!57;CL:0000057!2.95e-07!75;CL:1000449!5.08e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:1000449;5.12e-08;15!CL:1000497;2.32e-07;17!CL:0002518;2.32e-07;17!CL:0002681;3.74e-07;12!CL:0002584;3.74e-07;12 | |ontology_enrichment_celltype_v019=CL:1000449;5.12e-08;15!CL:1000497;2.32e-07;17!CL:0002518;2.32e-07;17!CL:0002681;3.74e-07;12!CL:0002584;3.74e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.63e-23,253;CL:0002321,1.18e-17,250;CL:0000076,3.54e-10,63;CL:0000222,4.43e-10,121;CL:0000213,2.38e-08,58;CL:0000215,2.38e-08,58;CL:1000449,5.37e-08,15;CL:1000497,2.30e-07,17;CL:0002518,2.30e-07,17;CL:0002078,2.51e-07,45;CL:0002681,3.89e-07,12;CL:0002584,3.89e-07,12;CL:0000057,9.06e-07,76 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.81e-27!235;DOID:14566!5.36e-26!239;DOID:0050686!2.88e-13!137;DOID:2531!9.57e-13!51;DOID:0060083!9.57e-13!51;DOID:0050687!1.86e-12!143;DOID:1240!7.65e-11!39;DOID:305!4.80e-10!106;DOID:8692!1.49e-08!31 | |ontology_enrichment_disease=DOID:162!1.81e-27!235;DOID:14566!5.36e-26!239;DOID:0050686!2.88e-13!137;DOID:2531!9.57e-13!51;DOID:0060083!9.57e-13!51;DOID:0050687!1.86e-12!143;DOID:1240!7.65e-11!39;DOID:305!4.80e-10!106;DOID:8692!1.49e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.16e-08;39!DOID:8692;1.99e-08;31!DOID:2531;3.53e-08;51!DOID:0060083;3.53e-08;51 | |ontology_enrichment_disease_v019=DOID:1240;1.16e-08;39!DOID:8692;1.99e-08;31!DOID:2531;3.53e-08;51!DOID:0060083;3.53e-08;51 | ||
|ontology_enrichment_disease_v019_2=DOID:162,2.18e-27,235;DOID:14566,4.50e-26,239;DOID:0050686,2.71e-13,137;DOID:2531,6.18e-13,51;DOID:0060083,6.18e-13,51;DOID:0050687,3.60e-12,143;DOID:1240,5.32e-11,39;DOID:305,6.77e-10,106;DOID:8692,1.14e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.08e-07!238;UBERON:0009142!1.08e-07!238;UBERON:0000487!4.48e-07!22;UBERON:0004211!5.08e-07!16;UBERON:0001285!5.08e-07!16;UBERON:0007684!5.08e-07!16;UBERON:0003220!5.08e-07!16;UBERON:0004208!5.08e-07!16 | |ontology_enrichment_uberon=UBERON:0003104!1.08e-07!238;UBERON:0009142!1.08e-07!238;UBERON:0000487!4.48e-07!22;UBERON:0004211!5.08e-07!16;UBERON:0001285!5.08e-07!16;UBERON:0007684!5.08e-07!16;UBERON:0003220!5.08e-07!16;UBERON:0004208!5.08e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.12e-08;15!UBERON:0004819;5.12e-08;15!UBERON:0001285;5.12e-08;15!UBERON:0007684;5.12e-08;15!UBERON:0000353;8.07e-08;15!UBERON:0002113;3.58e-07;24!UBERON:0011143;3.58e-07;24!UBERON:0000487;3.70e-07;22!UBERON:0001225;3.74e-07;12!UBERON:0008987;3.74e-07;12!UBERON:0000490;4.50e-07;33!UBERON:0001851;5.02e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0006555;5.12e-08;15!UBERON:0004819;5.12e-08;15!UBERON:0001285;5.12e-08;15!UBERON:0007684;5.12e-08;15!UBERON:0000353;8.07e-08;15!UBERON:0002113;3.58e-07;24!UBERON:0011143;3.58e-07;24!UBERON:0000487;3.70e-07;22!UBERON:0001225;3.74e-07;12!UBERON:0008987;3.74e-07;12!UBERON:0000490;4.50e-07;33!UBERON:0001851;5.02e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.37e-08,15;UBERON:0009773,5.37e-08,15;UBERON:0001231,5.37e-08,15;UBERON:0001285,5.37e-08,15;UBERON:0007684,5.37e-08,15;UBERON:0004208,5.37e-08,15;UBERON:0000353,8.17e-08,15;UBERON:0000487,3.61e-07,22;UBERON:0001225,3.89e-07,12;UBERON:0008987,3.89e-07,12;UBERON:0001851,5.66e-07,15;UBERON:0000490,6.40e-07,148;UBERON:0006555,6.98e-07,16;UBERON:0004819,6.98e-07,16 | |||
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| ||
|short_description=p1@CDC20 | |short_description=p1@CDC20 | ||
}} | }} |
Latest revision as of 04:21, 18 September 2015
Short description: | p1@CDC20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDC20_5end |
Coexpression cluster: | C2586_Alveolar_acute_Renal_Mesenchymal_Bronchial_Trabecular_Corneal |
Association with transcript: | 13bp_to_ENST00000310955, NM_001255, uc001cix.2_5end |
EntrezGene: | CDC20 |
HGNC: | 1723 |
UniProt: | Q12834 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.63e-23 | 253 |
embryonic cell | 1.18e-17 | 250 |
squamous epithelial cell | 3.54e-10 | 63 |
mesodermal cell | 4.43e-10 | 121 |
lining cell | 2.38e-08 | 58 |
barrier cell | 2.38e-08 | 58 |
epithelial cell of nephron | 5.37e-08 | 15 |
kidney cell | 2.30e-07 | 17 |
kidney epithelial cell | 2.30e-07 | 17 |
meso-epithelial cell | 2.51e-07 | 45 |
kidney cortical cell | 3.89e-07 | 12 |
renal cortical epithelial cell | 3.89e-07 | 12 |
fibroblast | 9.06e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 5.37e-08 | 15 |
renal tubule | 5.37e-08 | 15 |
nephron tubule | 5.37e-08 | 15 |
nephron | 5.37e-08 | 15 |
uriniferous tubule | 5.37e-08 | 15 |
nephrogenic mesenchyme | 5.37e-08 | 15 |
parenchyma | 8.17e-08 | 15 |
simple squamous epithelium | 3.61e-07 | 22 |
cortex of kidney | 3.89e-07 | 12 |
renal parenchyma | 3.89e-07 | 12 |
cortex | 5.66e-07 | 15 |
unilaminar epithelium | 6.40e-07 | 148 |
excretory tube | 6.98e-07 | 16 |
kidney epithelium | 6.98e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.18e-27 | 235 |
disease of cellular proliferation | 4.50e-26 | 239 |
organ system cancer | 2.71e-13 | 137 |
hematologic cancer | 6.18e-13 | 51 |
immune system cancer | 6.18e-13 | 51 |
cell type cancer | 3.60e-12 | 143 |
leukemia | 5.32e-11 | 39 |
carcinoma | 6.77e-10 | 106 |
myeloid leukemia | 1.14e-08 | 31 |