FFCP PHASE1:Hg19::chr7:27169967..27169988,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3201 | |EntrezGene=3201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |HGNC=5105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-157bp_to_ENST00000511914_5end | |association_with_transcript=-157bp_to_ENST00000511914_5end | ||
|cluster_id=chr7:27169967..27169988,- | |||
|description=CAGE_peak_5_at_HOXA4_5end | |description=CAGE_peak_5_at_HOXA4_5end | ||
|id=chr7:27169967..27169988,- | |id=chr7:27169967..27169988,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002581;2.54e-09;1!CL:0002591;2.54e-09;1!CL:0000312;2.67e-07;5!CL:0002595;2.67e-07;5!CL:0002188;2.67e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002581,1.32e-09,1;CL:0002591,3.25e-09,1;CL:0002188,2.14e-07,5;CL:0000312,2.51e-07,5;CL:0002595,4.03e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0005754;9.81e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!6.47e-07!32;UBERON:0003076!9.21e-07!15;UBERON:0003057!9.21e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;7.08e-25;3!UBERON:0005290;7.08e-25;3!UBERON:0002298;4.76e-22;6!UBERON:0004733;3.96e-11;12!UBERON:0002028;3.96e-11;12!UBERON:0004732;2.77e-10;13!UBERON:0000998;9.81e-10;1!UBERON:0006868;9.81e-10;1!UBERON:0003834;2.67e-07;5!UBERON:0001533;2.67e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.37e-25,3;UBERON:0005290,5.37e-25,3;UBERON:0010096,5.37e-25,3;UBERON:0002298,3.97e-22,6;UBERON:0003076,1.68e-13,15;UBERON:0003057,1.68e-13,15;UBERON:0004733,3.62e-11,12;UBERON:0002028,3.62e-11,12;UBERON:0007277,3.62e-11,12;UBERON:0004732,2.55e-10,13;UBERON:0000998,1.03e-09,1;UBERON:0006868,1.03e-09,1;UBERON:0000080,9.81e-09,9;UBERON:0002120,9.81e-09,9;UBERON:0004875,9.81e-09,9;UBERON:0005721,9.81e-09,9;UBERON:0005754,9.81e-09,9;UBERON:0007297,9.81e-09,9;UBERON:0004876,3.15e-07,11;UBERON:0003834,4.03e-07,5;UBERON:0001533,4.03e-07,5 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0.261185628199839,0.737201809504527,0,0,0.527533956456907,0,0,0,1.80808358407193,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0.825354125820202,0,0,0.35576626268671,0,0,0,0,0,0,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0,0.337552664482532,0.194874010322397,0.252433774244115,0.184099797284599,0,0.355009592516614,0.604512589365842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0.329250856225877,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.190493682876507,0.381988425558278,0,0,0.308482478109971,0,0,0,0,0,0.258543431515556,3.57656445851882,0,0,0,0.257207374262142,1.41849132023278,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0.871533458600294,0.499864955910285,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.896974044789907,0,0.804269605718038,1.48418066444991,0,0.177561725313127,0.164254312027618,0.519254429183621,0,0,0.40101294060657,0.0920809889358963,0,0.182091168006717,0,0,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0.170093705276516,0,1.54227252690289,0,0,0.509752546090077,0,0.671624264166535,0,0,0,0,0,0,0.183138929636687,0.41254749960294,0.574265537996172,0,0,0.096670718292122,0.308097234229289,0,0,0,0.145016693914229,0,0.0890320356467374,0,0,0,0,1.39453664789186,0.31481234683064,0,0,0,0.869932992075073,0.37064843820784,0,0,0,0.190630193923825,0,0,0.95460974377781,0.78494864019923,0,0,0,0,0,0,0,0.487426979262569,1.05650146756755,0,0.141405431953713,1.13008116620243,1.10273068709225,0,0,1.15755106853338,0,0,0,0.281695602532241,0,0,0.7133421029625,0,0,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0.398495976502139,0,0,1.02268682502155,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0.269272933229316,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.282706142867882,0.216388639742091,0,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0.34823682632161,0.873633341210151,0,0,0.0730893170861856,0,0.775912131907355,0.176512253383001,0,0.137041924646751,0.19871461170299,0,0.782205530939212,0,0,0.39961921916426,0.144090417154106,0.916292769327325,1.02956998717179,0,0,0.471388069233591,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.340776043570843,0.339936274560377,0,0,0.387848869084652,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,1.14681839138014,1.33114861844223,2.6080489235381,0,0.124980407962107,0.303298235083296,0,0,1.40500471742064,0.28984205722165,0,0.467426619694449,0,0.189403005275089,0,0,0.228840068396924,0,0.466311601748341,0,0,0.449803112163605,0.155262956876259,1.24411862352257,0,0,0.150257608997218,0.380805212168795,0,0,0.751873899297419,0,0,0.800055529326307,0.686791410365586,0,0,0.385239660814607,0,0,0,1.15761237161917,0.97894681802587,0.179088841081487,0.617602894321944,1.09642024789354,0,0.38582807654183,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0,0,0,0,0,0,0,0,0.366857197043358,0.231051332300676,0,0.690359926060101,0,0.150420656698515,0,0,0,0,0,0.405225507710368,0,0,0,0,0,0.496211178389294,0,0.255524855279191,0,0,0,0,0,0,0,4.96179050730871,0,0,0,0.156986185701028,0,0,0,0.215927591218621,0,0,0,0,0.521574816907738,0,0,0,0,0,0.118332000730565,0,2.11693525095465,0.22910686854405,0,0,0.447421727191169,0,0,0.647428837187895,0.102662806856247,0,0.485710993059139,0.233939463462106,0,0.118920090777569,0,0,1.05673990496671,0.231522474323834,0,0,0,0,1.17785080268967,0.891139200981258,0.4226557275834,0.509781344063451,0.187967835959707,0.193373663920732,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0.827054095813604,0,0,0.267964130156178,0,0,0,0,0,0,0,0.0636471582781649,0,0.435433495793923,0,0.202056159043763,0.0717222053926763,0.332660356546013,0.569822880276821,0,0,0,0,0.122241444182866,0,0.665756774185513,0.201273793591026,0 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| ||
|short_description=p5@HOXA4 | |short_description=p5@HOXA4 | ||
}} | }} |
Latest revision as of 01:20, 18 September 2015
Short description: | p5@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXA4_5end |
Coexpression cluster: | NA |
Association with transcript: | -157bp_to_ENST00000511914_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
perirenal preadipocyte | 1.32e-09 | 1 |
smooth muscle cell of the pulmonary artery | 3.25e-09 | 1 |
glomerular endothelial cell | 2.14e-07 | 5 |
keratinocyte | 2.51e-07 | 5 |
smooth muscle cell of the subclavian artery | 4.03e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 5.37e-25 | 3 |
myelencephalon | 5.37e-25 | 3 |
future myelencephalon | 5.37e-25 | 3 |
brainstem | 3.97e-22 | 6 |
posterior neural tube | 1.68e-13 | 15 |
chordal neural plate | 1.68e-13 | 15 |
segmental subdivision of hindbrain | 3.62e-11 | 12 |
hindbrain | 3.62e-11 | 12 |
presumptive hindbrain | 3.62e-11 | 12 |
segmental subdivision of nervous system | 2.55e-10 | 13 |
seminal vesicle | 1.03e-09 | 1 |
seminal fluid secreting gland | 1.03e-09 | 1 |
mesonephros | 9.81e-09 | 9 |
pronephros | 9.81e-09 | 9 |
nephrogenic cord | 9.81e-09 | 9 |
pronephric mesoderm | 9.81e-09 | 9 |
rostral part of nephrogenic cord | 9.81e-09 | 9 |
presumptive pronephric mesoderm | 9.81e-09 | 9 |
urogenital ridge | 3.15e-07 | 11 |
thoracic segment blood vessel | 4.03e-07 | 5 |
subclavian artery | 4.03e-07 | 5 |