FFCP PHASE1:Hg19::chr4:54424397..54424419,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84708 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6657 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-13bp_to_ENST00000306888_5end | |||
|cluster_id=chr4:54424397..54424419,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_LNX1_5end | |||
|id=chr4:54424397..54424419,- | |||
|ontology_enrichment_celltype=CL:0002620!3.86e-13!23;CL:0002139!1.36e-08!24;CL:0000327!2.45e-07!14;CL:0000153!5.64e-07!9;CL:0000447!5.64e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000153;1.10e-11;9!CL:0000447;1.10e-11;9!CL:0002620;1.18e-10;23!CL:0000138;1.85e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,9.60e-12,9;CL:0000447,9.60e-12,9;CL:0002620,8.76e-11,23;CL:0000058,1.45e-09,6;CL:0000138,1.45e-09,6;CL:0000047,3.97e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.23e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.70e-07;5!DOID:450;3.70e-07;5!DOID:66;3.70e-07;5!DOID:423;3.70e-07;5!DOID:0080000;3.70e-07;5!DOID:11722;3.70e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.21e-07,5;DOID:450,3.21e-07,5;DOID:66,3.21e-07,5;DOID:423,3.21e-07,5;DOID:0080000,3.21e-07,5;DOID:11722,3.21e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005743!5.67e-53!86;UBERON:0001017!2.55e-49!82;UBERON:0001049!1.13e-48!57;UBERON:0005068!1.13e-48!57;UBERON:0006241!1.13e-48!57;UBERON:0007135!1.13e-48!57;UBERON:0000073!4.82e-47!94;UBERON:0001016!4.82e-47!94;UBERON:0003075!1.07e-43!86;UBERON:0007284!1.07e-43!86;UBERON:0002346!4.43e-42!90;UBERON:0000955!4.91e-42!69;UBERON:0006238!4.91e-42!69;UBERON:0002616!9.38e-41!59;UBERON:0002780!3.49e-38!41;UBERON:0001890!3.49e-38!41;UBERON:0006240!3.49e-38!41;UBERON:0003080!6.03e-37!42;UBERON:0001893!5.18e-36!34;UBERON:0002020!8.63e-36!34;UBERON:0003528!8.63e-36!34;UBERON:0001869!1.12e-34!32;UBERON:0002791!1.18e-34!33;UBERON:0003056!1.01e-33!61;UBERON:0000956!4.71e-29!25;UBERON:0000203!4.71e-29!25;UBERON:0000033!3.85e-28!123;UBERON:0000153!1.38e-27!129;UBERON:0007811!1.38e-27!129;UBERON:0002619!3.82e-27!22;UBERON:0004121!4.03e-27!169;UBERON:0000924!1.07e-26!173;UBERON:0006601!1.07e-26!173;UBERON:0001950!4.63e-25!20;UBERON:0000025!8.59e-20!194;UBERON:0007023!1.38e-19!115;UBERON:0000119!1.19e-18!312;UBERON:0000483!2.34e-17!309;UBERON:0004111!9.24e-16!241;UBERON:0000475!1.77e-15!365;UBERON:0000477!4.18e-14!286;UBERON:0003076!1.71e-12!15;UBERON:0003057!1.71e-12!15;UBERON:0000467!1.61e-10!625;UBERON:0000480!1.95e-10!626;UBERON:0004733!3.31e-10!12;UBERON:0002028!3.31e-10!12;UBERON:0007277!3.31e-10!12;UBERON:0000064!4.81e-10!219;UBERON:0000468!5.11e-10!659;UBERON:0000200!2.35e-09!6;UBERON:0004732!3.42e-09!13;UBERON:0002097!4.62e-09!40;UBERON:0001871!8.18e-09!7;UBERON:0002420!1.01e-08!9;UBERON:0007245!1.01e-08!9;UBERON:0010009!1.01e-08!9;UBERON:0010011!1.01e-08!9;UBERON:0000454!1.01e-08!9;UBERON:0002308!2.88e-08!9;UBERON:0000125!2.88e-08!9;UBERON:0002199!3.45e-08!45;UBERON:0002416!3.45e-08!45;UBERON:0001872!7.68e-08!5;UBERON:0002021!9.38e-08!5;UBERON:0002680!1.23e-07!9;UBERON:0001895!1.23e-07!9;UBERON:0010092!1.23e-07!9;UBERON:0000349!2.06e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.35e-47;22!UBERON:0001950;2.44e-43;20!UBERON:0001869;8.69e-43;32!UBERON:0003528;3.27e-41;34!UBERON:0002020;3.27e-41;34!UBERON:0000956;7.76e-41;25!UBERON:0000203;7.76e-41;25!UBERON:0002791;1.01e-39;32!UBERON:0001893;3.96e-39;34!UBERON:0002780;1.68e-31;41!UBERON:0001890;1.68e-31;41!UBERON:0000073;1.99e-29;53!UBERON:0002616;1.99e-29;53!UBERON:0000955;5.87e-24;68!UBERON:0001017;6.38e-24;75!UBERON:0001016;5.25e-19;83!UBERON:0000200;3.25e-15;6!UBERON:0001871;1.29e-12;6!UBERON:0001872;1.38e-12;5!UBERON:0002021;2.03e-12;5!UBERON:0000349;6.27e-12;5!UBERON:0000369;3.59e-10;4!UBERON:0002435;3.59e-10;4!UBERON:0000204;3.59e-10;4!UBERON:0004733;9.81e-10;12!UBERON:0002028;9.81e-10;12!UBERON:0002420;2.35e-09;9!UBERON:0007245;2.35e-09;9!UBERON:0010009;2.35e-09;9!UBERON:0010011;2.35e-09;9!UBERON:0000454;2.35e-09;9!UBERON:0004732;6.99e-09;13!UBERON:0000125;1.33e-08;9!UBERON:0002308;1.33e-08;9!UBERON:0001870;1.73e-08;3!UBERON:0002298;2.98e-08;6!UBERON:0005383;6.79e-08;3!UBERON:0005382;6.79e-08;3!UBERON:0002680;7.78e-08;9!UBERON:0001895;7.78e-08;9!UBERON:0002097;2.27e-07;41!UBERON:0007023;5.18e-07;114!UBERON:0000988;9.39e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.35e-58,81;UBERON:0000073,1.51e-53,53;UBERON:0002616,1.51e-53,53;UBERON:0001049,6.19e-53,56;UBERON:0005068,6.19e-53,56;UBERON:0006241,6.19e-53,56;UBERON:0007135,6.19e-53,56;UBERON:0001016,7.16e-51,89;UBERON:0000955,7.45e-51,68;UBERON:0006238,7.45e-51,68;UBERON:0001869,4.12e-48,32;UBERON:0003528,1.35e-47,34;UBERON:0002020,1.35e-47,34;UBERON:0002619,4.11e-47,22;UBERON:0002780,6.81e-45,41;UBERON:0001890,6.81e-45,41;UBERON:0003080,6.81e-45,41;UBERON:0006240,6.81e-45,41;UBERON:0001893,7.35e-45,34;UBERON:0002791,3.66e-44,32;UBERON:0001950,2.00e-43,20;UBERON:0000956,7.39e-41,25;UBERON:0000203,7.39e-41,25;UBERON:0003075,2.90e-36,82;UBERON:0007284,2.90e-36,82;UBERON:0002346,4.94e-34,86;UBERON:0003056,3.47e-31,61;UBERON:0010371,6.29e-31,104;UBERON:0004121,8.81e-26,171;UBERON:0000924,8.81e-26,171;UBERON:0006601,8.81e-26,171;UBERON:0010314,1.79e-25,132;UBERON:0007023,1.40e-20,114;UBERON:0000200,2.93e-15,6;UBERON:0011216,6.01e-14,223;UBERON:0001871,1.23e-12,6;UBERON:0001872,1.32e-12,5;UBERON:0002021,1.88e-12,5;UBERON:0000349,7.45e-12,5;UBERON:0000025,1.79e-10,192;UBERON:0000369,3.25e-10,4;UBERON:0002435,3.25e-10,4;UBERON:0000204,3.25e-10,4;UBERON:0010082,3.25e-10,4;UBERON:0004733,7.91e-10,12;UBERON:0002028,7.91e-10,12;UBERON:0007277,7.91e-10,12;UBERON:0003076,1.25e-09,15;UBERON:0003057,1.25e-09,15;UBERON:0002097,1.99e-09,41;UBERON:0002420,2.27e-09,9;UBERON:0007245,2.27e-09,9;UBERON:0010009,2.27e-09,9;UBERON:0010011,2.27e-09,9;UBERON:0000454,2.27e-09,9;UBERON:0004732,5.75e-09,13;UBERON:0000125,9.68e-09,9;UBERON:0002308,9.68e-09,9;UBERON:0001870,1.71e-08,3;UBERON:0002298,2.38e-08,6;UBERON:0002199,5.34e-08,46;UBERON:0002416,5.34e-08,46;UBERON:0002680,5.54e-08,9;UBERON:0001895,5.54e-08,9;UBERON:0010092,5.54e-08,9;UBERON:0005383,6.27e-08,3;UBERON:0005382,6.27e-08,3;UBERON:0000483,1.58e-07,306;UBERON:0000119,2.46e-07,309;UBERON:0004111,2.46e-07,240;UBERON:0000988,5.83e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,0,0,0,0,0.495065411840187,0.994192127183747,0,0,0,0,1.47745269692145,0.204000691244253,0.313454721478088,0.286235987131057,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,3.97583067623023,4.01070328508712,6.0835537963546,3.9764297352555,2.91980922181582,0.189069634328136,0,0.263504357079378,1.5062593682237,0,0,0,0,0,0,0,0,0.79504962946682,0,1.04142150482278,0.56530794192401,0,0,0.626984899610432,1.03366703667732,0,0.66944122552934,0,0.760272105718513,0.24406205754817,0,0.81014194788176,0.357198913136319,0.22452937262617,0.225222960966644,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,1.94283284717341,1.76151747965647,0.971237666208789,0.98315564691574,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,3.04962380671065,1.92201649936711,0.847727604638247,4.50136644126603,2.98852334791473,2.57640540045629,2.23340227597908,3.88185564154912,0.779496041289589,3.28163906517349,2.76149695926898,0.161646056818812,2.13005755509969,0.806016785821122,0,0,0,0,0,0,0,0,0,0,0,1.92972281457866,0,3.25057549622385,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0.0925884451585296,0,0,0,0.231860809950154,0.117408694235822,1.44366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.87192013766656,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.723906533337896,1.84928690295345,1.25342674267927,0,0,0,0,3.04913549066956,6.50699269288109,3.86644406388848,7.37071567471135,3.18969375826582,0,0,0,0.49076596687656,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0.680374821106063,0,0,0,0,0,0,0,0,0,1.28225062558195,1.31205858279882,0.976135183992909,0.206082023295445,0,0,0,0.650060246036521,0,0.290012154876366,0,0.15350367472613,0,0,0,0.255679882248303,0.979352392114111,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16661452946496,4.28083360847872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,8.94732882989668,5.34543782359948,0,0,0,1.19548792950642,0,0,0,0,2.48831670129446,0,0,0,0,0,0,5.81599647657131,8.16359263824291,3.99227596002388,0,0,0,0,0,0,2.06846023944879,0,0,2.65722415744152,6.51220768577203,0,1.54810963903714,6.50204761697804,6.80094731177315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.943615861729479,0,5.15381780595746,0,0,0,0,0,6.73360075587078,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,14.8780370496315,0,0,0.213452994739353,0,0,0,0,0,0,0,1.08723364858891,1.35983700206033,0,0,0,0.684526894459965,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0.403100834920358,0,0,0,0,0,0,0,2.38568906942791,3.13267834056624,0,0,0,0,0,12.8181564548432,0,0,0.0524545881349981,0,0,0,1.42939065274673,0,0.25426853765475,0,0,0,0,0,0,0,0,0,1.80996138906171,1.98348902614035,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,12.4049545195378,11.5924951656865,5.88397374320549,1.14681839138014,0.887432412294818,1.36612086471044,0,0.124980407962107,0,0,0,0,0,0,0,0,3.21985108967651,0.50313580350515,7.11848977277229,0,0.151230923763239,0,0.591420599958536,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.94511275452442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,10.9189682663981,5.6678630530234,3.83121261737163,10.4609345762785,6.80593579798639,11.0651603942749,5.97459888837849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3049041698237,4.68646859168308,9.30090584255328,10.0831138208312,4.37579847214576,0,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0,0,0.443511850813194,0,0,3.87427477967941,12.5625997505042,0,0,0,11.4694380638681,0,0,0,0,0.571812353413251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0.109940516745429,0,0,0,0,0,0,0.196308467114945,0.594092800654172,2.5359343655004,0,0,0,0,0,0,0,0,0,0.143339583151451,0,11.2185958815009,3.05445483238264,0,0,5.54610754357702,0,0,0,0,0,0,0,0,0,0,4.1458471972939,2.0686599172379,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p3@LNX1 | |||
}} |
Latest revision as of 00:27, 18 September 2015
Short description: | p3@LNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LNX1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -13bp_to_ENST00000306888_5end |
EntrezGene: | LNX1 |
HGNC: | 6657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 9.60e-12 | 9 |
carbohydrate secreting cell | 9.60e-12 | 9 |
skin fibroblast | 8.76e-11 | 23 |
chondroblast | 1.45e-09 | 6 |
chondrocyte | 1.45e-09 | 6 |
neuronal stem cell | 3.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.21e-07 | 5 |
myotonic disease | 3.21e-07 | 5 |
muscle tissue disease | 3.21e-07 | 5 |
myopathy | 3.21e-07 | 5 |
muscular disease | 3.21e-07 | 5 |
myotonic dystrophy | 3.21e-07 | 5 |