FFCP PHASE1:Hg19::chr4:54424397..54424419,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:54424397..54424419,-
|short_description=p3@LNX1
|description=CAGE_peak_3_at_LNX1_5end
|association_with_transcript=-13bp_to_ENST00000306888_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84708 | |EntrezGene=84708 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6657 | |HGNC=6657 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000306888_5end | |||
|cluster_id=chr4:54424397..54424419,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_LNX1_5end | |||
|id=chr4:54424397..54424419,- | |||
|ontology_enrichment_celltype=CL:0002620!3.86e-13!23;CL:0002139!1.36e-08!24;CL:0000327!2.45e-07!14;CL:0000153!5.64e-07!9;CL:0000447!5.64e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000153;1.10e-11;9!CL:0000447;1.10e-11;9!CL:0002620;1.18e-10;23!CL:0000138;1.85e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,9.60e-12,9;CL:0000447,9.60e-12,9;CL:0002620,8.76e-11,23;CL:0000058,1.45e-09,6;CL:0000138,1.45e-09,6;CL:0000047,3.97e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.23e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.70e-07;5!DOID:450;3.70e-07;5!DOID:66;3.70e-07;5!DOID:423;3.70e-07;5!DOID:0080000;3.70e-07;5!DOID:11722;3.70e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.21e-07,5;DOID:450,3.21e-07,5;DOID:66,3.21e-07,5;DOID:423,3.21e-07,5;DOID:0080000,3.21e-07,5;DOID:11722,3.21e-07,5 | |||
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| ||
|short_description=p3@LNX1 | |||
}} | }} |
Latest revision as of 00:27, 18 September 2015
Short description: | p3@LNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LNX1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -13bp_to_ENST00000306888_5end |
EntrezGene: | LNX1 |
HGNC: | 6657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 9.60e-12 | 9 |
carbohydrate secreting cell | 9.60e-12 | 9 |
skin fibroblast | 8.76e-11 | 23 |
chondroblast | 1.45e-09 | 6 |
chondrocyte | 1.45e-09 | 6 |
neuronal stem cell | 3.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.21e-07 | 5 |
myotonic disease | 3.21e-07 | 5 |
muscle tissue disease | 3.21e-07 | 5 |
myopathy | 3.21e-07 | 5 |
muscular disease | 3.21e-07 | 5 |
myotonic dystrophy | 3.21e-07 | 5 |