FFCP PHASE1:Hg19::chr6:31763408..31763545,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7407 | |EntrezGene=7407 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12651 | |HGNC=12651 | ||
|TSSclassifier=strong | |||
|UniProt=B4DZ61 | |UniProt=B4DZ61 | ||
|association_with_transcript=0bp_to_ENST00000444930_5end | |association_with_transcript=0bp_to_ENST00000444930_5end | ||
|cluster_id=chr6:31763408..31763545,- | |||
|coexpression_cluster_id=C1171 | |||
|description=CAGE_peak_1_at_VARS_5end | |description=CAGE_peak_1_at_VARS_5end | ||
|id=chr6:31763408..31763545,- | |id=chr6:31763408..31763545,- | ||
|ontology_enrichment_celltype=CL:0002321!8.56e-18!248;CL:0000220!1.13e-17!246;CL:0000066!5.16e-16!254;CL:0000055!3.67e-12!180;CL:0000548!2.33e-11!679;CL:0000004!2.33e-11!679;CL:0000255!2.33e-11!679;CL:0000012!8.90e-11!682;CL:0000222!1.25e-10!119;CL:1000449!6.92e-09!16;CL:0000183!2.21e-08!59;CL:0002681!5.27e-08!13;CL:0002584!5.27e-08!13;CL:1000497!2.57e-07!18;CL:0002518!2.57e-07!18;CL:0000393!3.34e-07!60;CL:0000211!3.34e-07!60;CL:0000680!8.10e-07!57;CL:0000056!8.10e-07!57;CL:0000355!8.10e-07!57 | |ontology_enrichment_celltype=CL:0002321!8.56e-18!248;CL:0000220!1.13e-17!246;CL:0000066!5.16e-16!254;CL:0000055!3.67e-12!180;CL:0000548!2.33e-11!679;CL:0000004!2.33e-11!679;CL:0000255!2.33e-11!679;CL:0000012!8.90e-11!682;CL:0000222!1.25e-10!119;CL:1000449!6.92e-09!16;CL:0000183!2.21e-08!59;CL:0002681!5.27e-08!13;CL:0002584!5.27e-08!13;CL:1000497!2.57e-07!18;CL:0002518!2.57e-07!18;CL:0000393!3.34e-07!60;CL:0000211!3.34e-07!60;CL:0000680!8.10e-07!57;CL:0000056!8.10e-07!57;CL:0000355!8.10e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.13e-08;15!CL:0002681;8.30e-08;12!CL:0002584;8.30e-08;12!CL:1000497;4.82e-07;17!CL:0002518;4.82e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.98e-18,250;CL:0000066,8.76e-16,253;CL:0000222,3.28e-11,121;CL:1000449,1.09e-08,15;CL:0002681,8.07e-08,12;CL:0002584,8.07e-08,12;CL:0000393,2.03e-07,61;CL:0000211,2.03e-07,61;CL:0002078,4.26e-07,45;CL:1000497,4.38e-07,17;CL:0002518,4.38e-07,17;CL:0000680,4.95e-07,58;CL:0000056,4.95e-07,58;CL:0000355,4.95e-07,58;CL:0000187,6.28e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.14e-15!235;DOID:14566!6.76e-15!239;DOID:2531!1.03e-10!51;DOID:0060083!1.03e-10!51;DOID:1240!7.61e-09!39;DOID:8692!1.26e-08!31;DOID:0050686!2.19e-07!137;DOID:0050687!2.75e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.42e-08;31!DOID:1240;1.25e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.14e-15,235;DOID:14566,6.76e-15,239;DOID:2531,1.03e-10,51;DOID:0060083,1.03e-10,51;DOID:1240,7.61e-09,39;DOID:8692,1.26e-08,31;DOID:0050686,2.19e-07,137;DOID:0050687,2.75e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003914!9.39e-13!118;UBERON:0000119!1.01e-12!312;UBERON:0003104!1.31e-12!238;UBERON:0009142!1.31e-12!238;UBERON:0000483!4.21e-12!309;UBERON:0002100!9.24e-11!216;UBERON:0005256!9.48e-11!143;UBERON:0000490!2.27e-10!138;UBERON:0000486!1.49e-09!82;UBERON:0004290!1.74e-09!70;UBERON:0004211!6.92e-09!16;UBERON:0001285!6.92e-09!16;UBERON:0007684!6.92e-09!16;UBERON:0003220!6.92e-09!16;UBERON:0004208!6.92e-09!16;UBERON:0002049!2.42e-08!79;UBERON:0007798!2.42e-08!79;UBERON:0000055!3.72e-08!69;UBERON:0001225!5.27e-08!13;UBERON:0008987!5.27e-08!13;UBERON:0006555!7.23e-08!17;UBERON:0005103!7.23e-08!17;UBERON:0000083!7.23e-08!17;UBERON:0009201!7.23e-08!17;UBERON:0004819!7.23e-08!17;UBERON:0006553!7.23e-08!17;UBERON:0003074!7.23e-08!17;UBERON:0003060!7.23e-08!17;UBERON:0000353!7.27e-08!17;UBERON:0001851!7.41e-08!16;UBERON:0005177!1.07e-07!107;UBERON:0000914!1.71e-07!83;UBERON:0002329!1.71e-07!83;UBERON:0003077!1.71e-07!83;UBERON:0003059!1.71e-07!83;UBERON:0007282!1.71e-07!83;UBERON:0009618!1.71e-07!83;UBERON:0007285!1.71e-07!83;UBERON:0001134!2.64e-07!61;UBERON:0002036!2.64e-07!61;UBERON:0003082!2.64e-07!61;UBERON:0000481!2.74e-07!347;UBERON:0001981!3.03e-07!60;UBERON:0007500!3.03e-07!60;UBERON:0004537!3.03e-07!60;UBERON:0006965!3.03e-07!60;UBERON:0005172!4.40e-07!55;UBERON:0005173!4.40e-07!55;UBERON:0000475!4.48e-07!365;UBERON:0001048!5.58e-07!168;UBERON:0009569!5.87e-07!113;UBERON:0000080!6.63e-07!18;UBERON:0002120!6.63e-07!18;UBERON:0004875!6.63e-07!18;UBERON:0005721!6.63e-07!18;UBERON:0005754!6.63e-07!18;UBERON:0007297!6.63e-07!18;UBERON:0002385!9.82e-07!63;UBERON:0001015!9.82e-07!63;UBERON:0000383!9.82e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.13e-08;15!UBERON:0004819;1.13e-08;15!UBERON:0001285;1.13e-08;15!UBERON:0007684;1.13e-08;15!UBERON:0000353;7.62e-08;15!UBERON:0001225;8.30e-08;12!UBERON:0008987;8.30e-08;12!UBERON:0002113;1.03e-07;24!UBERON:0011143;1.03e-07;24!UBERON:0001851;1.23e-07;15!UBERON:0006554;2.25e-07;30!UBERON:0001008;2.25e-07;30!UBERON:0003914;2.72e-07;74 | |||
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| ||
|short_description=p1@VARS | |short_description=p1@VARS | ||
}} | }} |
Latest revision as of 00:00, 18 September 2015
Short description: | p1@VARS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VARS_5end |
Coexpression cluster: | C1171_Alveolar_Renal_Bronchial_Mesenchymal_Smooth_Keratinocyte_embryonic |
Association with transcript: | 0bp_to_ENST00000444930_5end |
EntrezGene: | VARS |
HGNC: | 12651 |
UniProt: | B4DZ61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.98e-18 | 250 |
epithelial cell | 8.76e-16 | 253 |
mesodermal cell | 3.28e-11 | 121 |
epithelial cell of nephron | 1.09e-08 | 15 |
kidney cortical cell | 8.07e-08 | 12 |
renal cortical epithelial cell | 8.07e-08 | 12 |
electrically responsive cell | 2.03e-07 | 61 |
electrically active cell | 2.03e-07 | 61 |
meso-epithelial cell | 4.26e-07 | 45 |
kidney cell | 4.38e-07 | 17 |
kidney epithelial cell | 4.38e-07 | 17 |
muscle precursor cell | 4.95e-07 | 58 |
myoblast | 4.95e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.95e-07 | 58 |
muscle cell | 6.28e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.14e-15 | 235 |
disease of cellular proliferation | 6.76e-15 | 239 |
hematologic cancer | 1.03e-10 | 51 |
immune system cancer | 1.03e-10 | 51 |
leukemia | 7.61e-09 | 39 |
myeloid leukemia | 1.26e-08 | 31 |
organ system cancer | 2.19e-07 | 137 |
cell type cancer | 2.75e-07 | 143 |