FFCP PHASE1:Hg19::chr2:166060382..166060411,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6328 | |EntrezGene=6328 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10590 | |HGNC=10590 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000409101_5end | |association_with_transcript=0bp_to_ENST00000409101_5end | ||
|cluster_id=chr2:166060382..166060411,- | |||
|coexpression_cluster_id=C2665 | |||
|description=CAGE_peak_4_at_SCN3A_5end | |description=CAGE_peak_4_at_SCN3A_5end | ||
|id=chr2:166060382..166060411,- | |id=chr2:166060382..166060411,- | ||
|ontology_enrichment_celltype=CL:0000236!4.80e-13!14;CL:0000945!2.60e-08!24;CL:0000826!2.60e-08!24 | |ontology_enrichment_celltype=CL:0000236!4.80e-13!14;CL:0000945!2.60e-08!24;CL:0000826!2.60e-08!24 | ||
|ontology_enrichment_celltype_v019=CL:0000236;1.88e-20;13!CL:0000945;1.80e-14;24!CL:1000306;1.02e-11;4!CL:0002547;1.02e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,5.79e-23,14;CL:0000945,1.47e-14,24;CL:0000826,1.47e-14,24;CL:1000306,1.20e-11,4;CL:0002547,1.20e-11,4;CL:0000542,2.44e-07,53;CL:0000051,2.44e-07,53 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.62e-36!115;UBERON:0001049!5.68e-35!57;UBERON:0005068!5.68e-35!57;UBERON:0006241!5.68e-35!57;UBERON:0007135!5.68e-35!57;UBERON:0001017!2.15e-31!82;UBERON:0000073!1.62e-30!94;UBERON:0001016!1.62e-30!94;UBERON:0005743!3.07e-30!86;UBERON:0003080!1.03e-29!42;UBERON:0002780!9.00e-29!41;UBERON:0001890!9.00e-29!41;UBERON:0006240!9.00e-29!41;UBERON:0002616!3.54e-28!59;UBERON:0002020!3.52e-26!34;UBERON:0003528!3.52e-26!34;UBERON:0001893!5.21e-26!34;UBERON:0000955!9.30e-26!69;UBERON:0006238!9.30e-26!69;UBERON:0002791!6.06e-25!33;UBERON:0001869!1.63e-24!32;UBERON:0003075!2.60e-21!86;UBERON:0007284!2.60e-21!86;UBERON:0002346!1.27e-20!90;UBERON:0002619!1.96e-20!22;UBERON:0001950!3.58e-18!20;UBERON:0003056!7.21e-18!61;UBERON:0000956!2.94e-17!25;UBERON:0000203!2.94e-17!25;UBERON:0000153!3.67e-12!129;UBERON:0007811!3.67e-12!129;UBERON:0004121!2.91e-11!169;UBERON:0000924!3.89e-11!173;UBERON:0006601!3.89e-11!173;UBERON:0000033!4.11e-11!123;UBERON:0002420!5.30e-11!9;UBERON:0007245!5.30e-11!9;UBERON:0010009!5.30e-11!9;UBERON:0010011!5.30e-11!9;UBERON:0000454!5.30e-11!9;UBERON:0002308!1.07e-10!9;UBERON:0000125!1.07e-10!9;UBERON:0001871!1.22e-08!7;UBERON:0009663!1.52e-08!7;UBERON:0000025!5.25e-08!194;UBERON:0000349!1.24e-07!5;UBERON:0001872!3.53e-07!5;UBERON:0002298!4.66e-07!8;UBERON:0003076!8.28e-07!15;UBERON:0003057!8.28e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.54e-22;34!UBERON:0002020;1.54e-22;34!UBERON:0002619;1.94e-21;22!UBERON:0001869;6.88e-21;32!UBERON:0001950;2.76e-20;20!UBERON:0001893;1.61e-19;34!UBERON:0000956;1.50e-18;25!UBERON:0000203;1.50e-18;25!UBERON:0002791;2.22e-18;32!UBERON:0000073;1.24e-15;53!UBERON:0002616;1.24e-15;53!UBERON:0002780;1.27e-15;41!UBERON:0001890;1.27e-15;41!UBERON:0001871;7.07e-14;6!UBERON:0001017;1.26e-12;75!UBERON:0004797;1.02e-11;4!UBERON:0000415;1.02e-11;4!UBERON:0007240;1.02e-11;4!UBERON:0005742;1.02e-11;4!UBERON:0005734;1.02e-11;4!UBERON:0004664;1.02e-11;4!UBERON:0004663;1.02e-11;4!UBERON:0000955;3.47e-11;68!UBERON:0000200;3.93e-11;6!UBERON:0001016;1.26e-10;83!UBERON:0000349;1.47e-09;5!UBERON:0000988;1.57e-08;3!UBERON:0002420;5.97e-08;9!UBERON:0007245;5.97e-08;9!UBERON:0010009;5.97e-08;9!UBERON:0010011;5.97e-08;9!UBERON:0000454;5.97e-08;9!UBERON:0000125;9.00e-08;9!UBERON:0002308;9.00e-08;9!UBERON:0000369;2.13e-07;4!UBERON:0002435;2.13e-07;4!UBERON:0000204;2.13e-07;4!UBERON:0002298;3.15e-07;6!UBERON:0002370;6.72e-07;2!UBERON:0005058;6.72e-07;2!UBERON:0009113;6.72e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.67e-27,56;UBERON:0005068,7.67e-27,56;UBERON:0006241,7.67e-27,56;UBERON:0007135,7.67e-27,56;UBERON:0001017,2.12e-26,81;UBERON:0000073,2.26e-26,53;UBERON:0002616,2.26e-26,53;UBERON:0003528,5.14e-25,34;UBERON:0002020,5.14e-25,34;UBERON:0001869,4.57e-24,32;UBERON:0001016,5.78e-23,89;UBERON:0002780,1.45e-22,41;UBERON:0001890,1.45e-22,41;UBERON:0003080,1.45e-22,41;UBERON:0006240,1.45e-22,41;UBERON:0000955,2.03e-22,68;UBERON:0006238,2.03e-22,68;UBERON:0001893,2.07e-22,34;UBERON:0002619,1.20e-21,22;UBERON:0002791,1.94e-21,32;UBERON:0001950,1.68e-20,20;UBERON:0000956,9.86e-19,25;UBERON:0000203,9.86e-19,25;UBERON:0003075,3.18e-16,82;UBERON:0007284,3.18e-16,82;UBERON:0002346,3.66e-15,86;UBERON:0001871,2.92e-14,6;UBERON:0003056,1.47e-13,61;UBERON:0010371,1.63e-12,104;UBERON:0000415,1.20e-11,4;UBERON:0007240,1.20e-11,4;UBERON:0005742,1.20e-11,4;UBERON:0005734,1.20e-11,4;UBERON:0004664,1.20e-11,4;UBERON:0004663,1.20e-11,4;UBERON:0007023,1.23e-11,114;UBERON:0000200,3.58e-11,6;UBERON:0011216,1.80e-10,223;UBERON:0004121,7.99e-10,171;UBERON:0000924,7.99e-10,171;UBERON:0006601,7.99e-10,171;UBERON:0000349,9.99e-10,5;UBERON:0000988,2.70e-08,3;UBERON:0000025,3.95e-08,192;UBERON:0002420,4.38e-08,9;UBERON:0007245,4.38e-08,9;UBERON:0010009,4.38e-08,9;UBERON:0010011,4.38e-08,9;UBERON:0000454,4.38e-08,9;UBERON:0000125,1.03e-07,9;UBERON:0002308,1.03e-07,9;UBERON:0010314,1.06e-07,132;UBERON:0000369,2.21e-07,4;UBERON:0002435,2.21e-07,4;UBERON:0000204,2.21e-07,4;UBERON:0010082,2.21e-07,4;UBERON:0002298,4.17e-07,6;UBERON:0000007,6.95e-07,2;UBERON:0001876,7.80e-07,2 | |||
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|short_description=p4@SCN3A | |short_description=p4@SCN3A | ||
}} | }} |
Latest revision as of 23:31, 17 September 2015
Short description: | p4@SCN3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCN3A_5end |
Coexpression cluster: | C2665_occipital_parietal_normal_temporal_duodenum_somatostatinoma_putamen |
Association with transcript: | 0bp_to_ENST00000409101_5end |
EntrezGene: | SCN3A |
HGNC: | 10590 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 5.79e-23 | 14 |
lymphocyte of B lineage | 1.47e-14 | 24 |
pro-B cell | 1.47e-14 | 24 |
fibroblast of tunica adventitia of artery | 1.20e-11 | 4 |
fibroblast of the aortic adventitia | 1.20e-11 | 4 |
lymphocyte | 2.44e-07 | 53 |
common lymphoid progenitor | 2.44e-07 | 53 |