FFCP PHASE1:Hg19::chr12:1929644..1929709,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=654429 | |EntrezGene=654429 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32443 | |HGNC=32443 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N967 | |UniProt=Q8N967 | ||
|association_with_transcript=0bp_to_ENST00000299194,ENST00000542529,ENST00000543730,ENST00000545157_5end | |association_with_transcript=0bp_to_ENST00000299194,ENST00000542529,ENST00000543730,ENST00000545157_5end | ||
|cluster_id=chr12:1929644..1929709,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_2_at_LRTM2_5end | |description=CAGE_peak_2_at_LRTM2_5end | ||
|id=chr12:1929644..1929709,+ | |id=chr12:1929644..1929709,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.86e-19;82!UBERON:0010122;1.77e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.45e-83!57;UBERON:0005068!4.45e-83!57;UBERON:0006241!4.45e-83!57;UBERON:0007135!4.45e-83!57;UBERON:0001017!3.16e-80!82;UBERON:0005743!6.39e-79!86;UBERON:0000073!7.03e-76!94;UBERON:0001016!7.03e-76!94;UBERON:0002616!2.46e-72!59;UBERON:0000955!2.50e-72!69;UBERON:0006238!2.50e-72!69;UBERON:0002780!3.47e-67!41;UBERON:0001890!3.47e-67!41;UBERON:0006240!3.47e-67!41;UBERON:0003080!2.21e-65!42;UBERON:0001869!1.55e-63!32;UBERON:0001893!1.55e-63!34;UBERON:0002020!1.74e-63!34;UBERON:0003528!1.74e-63!34;UBERON:0002791!4.35e-61!33;UBERON:0003075!9.44e-59!86;UBERON:0007284!9.44e-59!86;UBERON:0002346!1.42e-55!90;UBERON:0002619!2.61e-53!22;UBERON:0001950!8.93e-49!20;UBERON:0000956!2.24e-46!25;UBERON:0000203!2.24e-46!25;UBERON:0003056!8.32e-45!61;UBERON:0007023!2.52e-41!115;UBERON:0000033!4.76e-39!123;UBERON:0004121!8.92e-38!169;UBERON:0000153!1.22e-36!129;UBERON:0007811!1.22e-36!129;UBERON:0000924!1.43e-36!173;UBERON:0006601!1.43e-36!173;UBERON:0000025!6.46e-21!194;UBERON:0002420!1.03e-18!9;UBERON:0007245!1.03e-18!9;UBERON:0010009!1.03e-18!9;UBERON:0010011!1.03e-18!9;UBERON:0000454!1.03e-18!9;UBERON:0002308!3.66e-18!9;UBERON:0000125!3.66e-18!9;UBERON:0003076!4.90e-18!15;UBERON:0003057!4.90e-18!15;UBERON:0004732!2.93e-17!13;UBERON:0000200!1.25e-16!6;UBERON:0001871!1.68e-16!7;UBERON:0004733!2.99e-15!12;UBERON:0002028!2.99e-15!12;UBERON:0007277!2.99e-15!12;UBERON:0004111!3.62e-15!241;UBERON:0002021!5.59e-14!5;UBERON:0001872!6.05e-14!5;UBERON:0009663!8.26e-14!7;UBERON:0000349!1.05e-13!5;UBERON:0000477!3.10e-12!286;UBERON:0000369!4.80e-12!4;UBERON:0002435!4.80e-12!4;UBERON:0000204!4.80e-12!4;UBERON:0010082!4.80e-12!4;UBERON:0000483!9.89e-12!309;UBERON:0000119!1.72e-11!312;UBERON:0000064!6.30e-11!219;UBERON:0002298!7.54e-11!8;UBERON:0002680!1.74e-09!9;UBERON:0001895!1.74e-09!9;UBERON:0010092!1.74e-09!9;UBERON:0005383!1.83e-09!3;UBERON:0005382!1.83e-09!3;UBERON:0002771!4.34e-09!3;UBERON:0000988!2.36e-08!3;UBERON:0000475!4.14e-08!365;UBERON:0001896!4.89e-08!3;UBERON:0005290!4.89e-08!3;UBERON:0010096!4.89e-08!3;UBERON:0001870!7.64e-07!2;UBERON:0001873!7.85e-07!2;UBERON:0010122!7.85e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.60e-79;32!UBERON:0002619;1.78e-79;22!UBERON:0003528;7.53e-78;34!UBERON:0002020;7.53e-78;34!UBERON:0002791;2.09e-74;32!UBERON:0001950;1.18e-72;20!UBERON:0001893;4.44e-72;34!UBERON:0000956;1.19e-69;25!UBERON:0000203;1.19e-69;25!UBERON:0002780;1.27e-59;41!UBERON:0001890;1.27e-59;41!UBERON:0000073;2.60e-48;53!UBERON:0002616;2.60e-48;53!UBERON:0000955;2.54e-38;68!UBERON:0001017;2.04e-37;75!UBERON:0001016;1.12e-28;83!UBERON:0000200;4.10e-24;6!UBERON:0002420;1.18e-21;9!UBERON:0007245;1.18e-21;9!UBERON:0010009;1.18e-21;9!UBERON:0010011;1.18e-21;9!UBERON:0000454;1.18e-21;9!UBERON:0000125;7.43e-21;9!UBERON:0002308;7.43e-21;9!UBERON:0001871;1.21e-20;6!UBERON:0002021;4.18e-20;5!UBERON:0001872;4.26e-20;5!UBERON:0000349;9.37e-20;5!UBERON:0000369;3.22e-17;4!UBERON:0002435;3.22e-17;4!UBERON:0000204;3.22e-17;4!UBERON:0002298;5.17e-15;6!UBERON:0009663;1.33e-14;7!UBERON:0007023;5.94e-14;114!UBERON:0005383;2.14e-13;3!UBERON:0005382;2.14e-13;3!UBERON:0001870;5.02e-13;3!UBERON:0004732;7.61e-13;13!UBERON:0000988;1.16e-11;3!UBERON:0011216;6.18e-11;132!UBERON:0004733;1.97e-10;12!UBERON:0002028;1.97e-10;12!UBERON:0001873;1.77e-09;2!UBERON:0001876;2.61e-09;2!UBERON:0010314;2.62e-09;132!UBERON:0002702;2.78e-09;2!UBERON:0002771;3.14e-09;2!UBERON:0001897;5.51e-09;2!UBERON:0010225;5.51e-09;2!UBERON:0001954;2.38e-08;2!UBERON:0003022;2.38e-08;2!UBERON:0002421;2.38e-08;2!UBERON:0002600;2.38e-08;2!UBERON:0002148;2.82e-08;2!UBERON:0006331;2.82e-08;2!UBERON:0009662;2.82e-08;2!UBERON:0002680;9.79e-07;9!UBERON:0001895;9.79e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.55e-97,56;UBERON:0005068,3.55e-97,56;UBERON:0006241,3.55e-97,56;UBERON:0007135,3.55e-97,56;UBERON:0000073,2.19e-92,53;UBERON:0002616,2.19e-92,53;UBERON:0001017,1.29e-91,81;UBERON:0003528,1.45e-89,34;UBERON:0002020,1.45e-89,34;UBERON:0001869,2.78e-89,32;UBERON:0001016,1.81e-85,89;UBERON:0002780,4.43e-85,41;UBERON:0001890,4.43e-85,41;UBERON:0003080,4.43e-85,41;UBERON:0006240,4.43e-85,41;UBERON:0001893,8.96e-84,34;UBERON:0002791,8.24e-83,32;UBERON:0000955,1.96e-82,68;UBERON:0006238,1.96e-82,68;UBERON:0002619,1.82e-79,22;UBERON:0001950,1.20e-72,20;UBERON:0000956,1.22e-69,25;UBERON:0000203,1.22e-69,25;UBERON:0003075,2.10e-67,82;UBERON:0007284,2.10e-67,82;UBERON:0002346,6.92e-64,86;UBERON:0003056,7.94e-59,61;UBERON:0010371,2.26e-51,104;UBERON:0007023,3.04e-44,114;UBERON:0010314,3.43e-43,132;UBERON:0004121,1.36e-40,171;UBERON:0000924,1.36e-40,171;UBERON:0006601,1.36e-40,171;UBERON:0011216,4.41e-32,223;UBERON:0000200,4.19e-24,6;UBERON:0000025,2.32e-22,192;UBERON:0002420,1.46e-21,9;UBERON:0007245,1.46e-21,9;UBERON:0010009,1.46e-21,9;UBERON:0010011,1.46e-21,9;UBERON:0000454,1.46e-21,9;UBERON:0000125,7.79e-21,9;UBERON:0002308,7.79e-21,9;UBERON:0001871,1.44e-20,6;UBERON:0002021,3.94e-20,5;UBERON:0001872,4.44e-20,5;UBERON:0000349,1.01e-19,5;UBERON:0000369,3.10e-17,4;UBERON:0002435,3.10e-17,4;UBERON:0000204,3.10e-17,4;UBERON:0010082,3.10e-17,4;UBERON:0004111,4.02e-16,240;UBERON:0002298,4.79e-15,6;UBERON:0009663,1.45e-14,7;UBERON:0003076,1.68e-14,15;UBERON:0003057,1.68e-14,15;UBERON:0005383,2.23e-13,3;UBERON:0005382,2.23e-13,3;UBERON:0001870,4.28e-13,3;UBERON:0004732,7.47e-13,13;UBERON:0000483,1.97e-12,306;UBERON:0000119,3.20e-12,309;UBERON:0000988,1.02e-11,3;UBERON:0004733,1.99e-10,12;UBERON:0002028,1.99e-10,12;UBERON:0007277,1.99e-10,12;UBERON:0001873,1.89e-09,2;UBERON:0010122,1.89e-09,2;UBERON:0002702,2.62e-09,2;UBERON:0001876,3.08e-09,2;UBERON:0002771,3.47e-09,2;UBERON:0001897,6.09e-09,2;UBERON:0010225,6.09e-09,2;UBERON:0001954,2.38e-08,2;UBERON:0003022,2.38e-08,2;UBERON:0002421,2.38e-08,2;UBERON:0002600,2.38e-08,2;UBERON:0002148,2.67e-08,2;UBERON:0006331,2.67e-08,2;UBERON:0009662,2.67e-08,2;UBERON:0000923,2.28e-07,560;UBERON:0010316,2.28e-07,560;UBERON:0005291,2.28e-07,560;UBERON:0006598,2.28e-07,560;UBERON:0010317,2.28e-07,560;UBERON:0002532,2.28e-07,560;UBERON:0002050,3.05e-07,564;UBERON:0002680,9.72e-07,9;UBERON:0001895,9.72e-07,9;UBERON:0010092,9.72e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31986643833309,2.84777651068393,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9239194209619,5.06409899077846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75466196876175,5.93715828235848,13.9729658600836,0,0,0,0,0,0,5.17115059862197,0,0.173624994933292,19.4863104879045,6.39161124714662,3.05163472634166,0.221158519862449,0.886642856860642,4.38770794307945,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.808813595768125,0,7.02793337176017,0,0,0,0,0,4.59109142445735,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,6.8375659632349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.00210144354895,0.684526894459965,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,2.38568906942791,3.40508515278939,0,0,0,0,0,7.65444413891111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23207390903876,1.98348902614035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.74674997963685,8.17575974843153,5.63359188179249,1.14681839138014,0.998361463831671,1.17983165588629,0,0.124980407962107,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,5.25382057376577,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,7.96442391196098,5.6678630530234,6.06608664417175,6.76884001994492,3.52900374710405,9.54370084006207,5.97459888837849,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26793160023478,7.02970288752463,6.61397748803789,5.20009643590036,4.92277328116398,0,0,0,0,0,0.336283722218824,0,0,0,0,0,3.60239584777208,6.64305012984776,0,0,0,8.3271262655481,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12247780941385,0,3.8039015482506,0.169927114687817,0,0,0,0,0,0,0,0,0,0,8.97487670520074,4.79985759374415,0,0,0,0,0,0,0,0,0,0,0,0,0,8.29169439458779,3.10298987585686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31986643833309,2.84777651068393,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9239194209619,5.06409899077846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75466196876175,5.93715828235848,13.9729658600836,0,0,0,0,0,0,5.17115059862197,0,0.173624994933292,19.4863104879045,6.39161124714662,3.05163472634166,0.221158519862449,0.886642856860642,4.38770794307945,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.808813595768125,0,7.02793337176017,0,0,0,0,0,4.59109142445735,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,6.8375659632349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.00210144354895,0.684526894459965,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,2.38568906942791,3.40508515278939,0,0,0,0,0,7.65444413891111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23207390903876,1.98348902614035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.74674997963685,8.17575974843153,5.63359188179249,1.14681839138014,0.998361463831671,1.17983165588629,0,0.124980407962107,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,5.25382057376577,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,7.96442391196098,5.6678630530234,6.06608664417175,6.76884001994492,3.52900374710405,9.54370084006207,5.97459888837849,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26793160023478,7.02970288752463,6.61397748803789,5.20009643590036,4.92277328116398,0,0,0,0,0,0.336283722218824,0,0,0,0,0,3.60239584777208,6.64305012984776,0,0,0,8.3271262655481,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12247780941385,0,3.8039015482506,0.169927114687817,0,0,0,0,0,0,0,0,0,0,8.97487670520074,4.79985759374415,0,0,0,0,0,0,0,0,0,0,0,0,0,8.29169439458779,3.10298987585686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@LRTM2 | |short_description=p2@LRTM2 | ||
}} | }} |
Latest revision as of 17:51, 17 September 2015
Short description: | p2@LRTM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRTM2_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000299194, ENST00000542529, ENST00000543730, ENST00000545157_5end |
EntrezGene: | LRTM2 |
HGNC: | 32443 |
UniProt: | Q8N967 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data