FFCP PHASE1:Hg19::chr11:31832658..31832681,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:31832658..31832681,- to FFCP PHASE1:Hg19::chr11:31832658..31832681,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5080 | |EntrezGene=5080 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8620 | |HGNC=8620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000527769_5end | |||
|cluster_id=chr11:31832658..31832681,- | |||
|coexpression_cluster_id=C798 | |||
|description=CAGE_peak_1_at_PAX6_5end | |||
|id=chr11:31832658..31832681,- | |||
|ontology_enrichment_celltype=CL:0002319!2.77e-09!25;CL:0000095!6.79e-08!17;CL:0000123!6.79e-08!17;CL:0000128!9.69e-07!7;CL:0000126!9.69e-07!7;CL:0000127!9.69e-07!7;CL:0002453!9.69e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000128;2.70e-08;7!CL:0000126;2.70e-08;7!CL:0000127;2.70e-08;7!CL:0002319;1.63e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,2.61e-08,7;CL:0000126,2.61e-08,7;CL:0000127,2.61e-08,7;CL:0002453,2.61e-08,7;CL:0002319,1.53e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.53e-09;82 | |||
|ontology_enrichment_disease=DOID:0050687!2.33e-14!143;DOID:305!2.35e-10!106;DOID:14566!8.97e-10!239;DOID:162!1.02e-09!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,8.82e-12,143;DOID:305,2.60e-08,106;DOID:14566,8.35e-08,239;DOID:162,1.36e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.60e-48!94;UBERON:0001016!4.60e-48!94;UBERON:0005743!9.92e-48!86;UBERON:0002346!7.08e-46!90;UBERON:0003075!1.37e-44!86;UBERON:0007284!1.37e-44!86;UBERON:0001017!2.72e-44!82;UBERON:0001049!5.09e-42!57;UBERON:0005068!5.09e-42!57;UBERON:0006241!5.09e-42!57;UBERON:0007135!5.09e-42!57;UBERON:0000955!1.47e-39!69;UBERON:0006238!1.47e-39!69;UBERON:0002616!3.88e-38!59;UBERON:0003056!1.02e-37!61;UBERON:0000033!7.02e-33!123;UBERON:0000153!9.18e-33!129;UBERON:0007811!9.18e-33!129;UBERON:0000924!2.54e-31!173;UBERON:0006601!2.54e-31!173;UBERON:0002780!4.50e-31!41;UBERON:0001890!4.50e-31!41;UBERON:0006240!4.50e-31!41;UBERON:0004121!5.82e-30!169;UBERON:0003080!6.61e-30!42;UBERON:0001893!3.50e-26!34;UBERON:0002020!3.75e-26!34;UBERON:0003528!3.75e-26!34;UBERON:0002791!1.60e-25!33;UBERON:0001869!7.89e-25!32;UBERON:0000956!9.51e-20!25;UBERON:0000203!9.51e-20!25;UBERON:0002619!3.19e-17!22;UBERON:0001950!1.52e-15!20;UBERON:0003076!5.29e-13!15;UBERON:0003057!5.29e-13!15;UBERON:0007023!2.39e-11!115;UBERON:0007625!5.61e-11!11;UBERON:0004733!1.14e-10!12;UBERON:0002028!1.14e-10!12;UBERON:0007277!1.14e-10!12;UBERON:0000475!2.45e-10!365;UBERON:0000970!8.02e-10!20;UBERON:0004732!1.73e-09!13;UBERON:0000020!2.07e-09!23;UBERON:0000019!4.43e-09!19;UBERON:0000047!4.43e-09!19;UBERON:0004088!4.43e-09!19;UBERON:0003072!4.43e-09!19;UBERON:0003071!4.43e-09!19;UBERON:0004128!4.43e-09!19;UBERON:0000064!4.50e-09!219;UBERON:0002104!4.66e-09!21;UBERON:0001032!9.63e-09!24;UBERON:0004456!9.63e-09!24;UBERON:0000483!1.66e-08!309;UBERON:0002680!3.02e-08!9;UBERON:0001895!3.02e-08!9;UBERON:0010092!3.02e-08!9;UBERON:0000119!3.96e-08!312;UBERON:0002420!5.28e-08!9;UBERON:0007245!5.28e-08!9;UBERON:0010009!5.28e-08!9;UBERON:0010011!5.28e-08!9;UBERON:0000454!5.28e-08!9;UBERON:0002308!7.89e-08!9;UBERON:0000125!7.89e-08!9;UBERON:0001456!1.12e-07!21;UBERON:0001871!5.28e-07!7;UBERON:0000025!8.72e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.77e-29;53!UBERON:0002616;2.77e-29;53!UBERON:0003528;3.61e-29;34!UBERON:0002020;3.61e-29;34!UBERON:0001893;3.72e-29;34!UBERON:0001869;4.10e-29;32!UBERON:0002791;4.44e-29;32!UBERON:0002780;1.27e-28;41!UBERON:0001890;1.27e-28;41!UBERON:0000956;2.98e-25;25!UBERON:0000203;2.98e-25;25!UBERON:0002619;5.80e-22;22!UBERON:0001017;3.05e-21;75!UBERON:0000955;1.51e-20;68!UBERON:0001950;8.72e-20;20!UBERON:0001016;5.67e-19;83!UBERON:0007625;7.96e-14;11!UBERON:0004733;2.14e-13;12!UBERON:0002028;2.14e-13;12!UBERON:0004732;4.59e-12;13!UBERON:0000970;5.46e-12;20!UBERON:0002104;3.58e-11;21!UBERON:0000019;4.94e-11;19!UBERON:0000047;4.94e-11;19!UBERON:0004088;4.94e-11;19!UBERON:0010230;4.94e-11;19!UBERON:0002680;3.02e-10;9!UBERON:0001895;3.02e-10;9!UBERON:0002420;6.22e-10;9!UBERON:0007245;6.22e-10;9!UBERON:0010009;6.22e-10;9!UBERON:0010011;6.22e-10;9!UBERON:0000454;6.22e-10;9!UBERON:0000020;9.18e-10;23!UBERON:0000125;1.04e-09;9!UBERON:0002308;1.04e-09;9!UBERON:0001456;1.54e-09;21!UBERON:0001032;3.75e-09;24!UBERON:0004456;3.75e-09;24!UBERON:0001801;4.49e-08;14!UBERON:0009663;5.47e-08;7!UBERON:0002037;7.04e-08;6!UBERON:0001871;8.94e-08;6!UBERON:0001894;1.04e-07;7!UBERON:0011216;1.57e-07;132!UBERON:0002298;3.75e-07;6!UBERON:0010314;6.84e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003075,5.14e-58,82;UBERON:0007284,5.14e-58,82;UBERON:0002346,4.35e-57,86;UBERON:0001049,6.82e-56,56;UBERON:0005068,6.82e-56,56;UBERON:0006241,6.82e-56,56;UBERON:0007135,6.82e-56,56;UBERON:0000073,1.31e-52,53;UBERON:0002616,1.31e-52,53;UBERON:0001017,2.02e-51,81;UBERON:0001016,2.41e-51,89;UBERON:0003056,1.65e-48,61;UBERON:0000955,5.99e-46,68;UBERON:0006238,5.99e-46,68;UBERON:0010371,2.46e-43,104;UBERON:0002780,5.05e-40,41;UBERON:0001890,5.05e-40,41;UBERON:0003080,5.05e-40,41;UBERON:0006240,5.05e-40,41;UBERON:0001893,1.22e-33,34;UBERON:0003528,1.34e-33,34;UBERON:0002020,1.34e-33,34;UBERON:0004121,1.63e-33,171;UBERON:0000924,1.63e-33,171;UBERON:0006601,1.63e-33,171;UBERON:0001869,7.15e-32,32;UBERON:0002791,8.45e-32,32;UBERON:0010314,1.06e-31,132;UBERON:0000956,3.04e-25,25;UBERON:0000203,3.04e-25,25;UBERON:0002619,5.98e-22,22;UBERON:0001950,9.19e-20,20;UBERON:0011216,2.95e-19,223;UBERON:0003076,1.88e-16,15;UBERON:0003057,1.88e-16,15;UBERON:0007625,8.17e-14,11;UBERON:0004733,2.04e-13,12;UBERON:0002028,2.04e-13,12;UBERON:0007277,2.04e-13,12;UBERON:0007023,3.71e-12,114;UBERON:0004732,4.41e-12,13;UBERON:0000970,3.60e-11,21;UBERON:0002104,3.60e-11,21;UBERON:0002680,2.90e-10,9;UBERON:0001895,2.90e-10,9;UBERON:0010092,2.90e-10,9;UBERON:0000019,3.05e-10,20;UBERON:0000047,3.05e-10,20;UBERON:0010312,3.05e-10,20;UBERON:0004088,3.05e-10,20;UBERON:0010230,3.05e-10,20;UBERON:0003072,3.05e-10,20;UBERON:0004128,3.05e-10,20;UBERON:0003071,3.05e-10,20;UBERON:0002420,5.99e-10,9;UBERON:0007245,5.99e-10,9;UBERON:0010009,5.99e-10,9;UBERON:0010011,5.99e-10,9;UBERON:0000454,5.99e-10,9;UBERON:0000125,1.01e-09,9;UBERON:0002308,1.01e-09,9;UBERON:0000020,3.77e-09,24;UBERON:0001032,3.77e-09,24;UBERON:0004456,3.77e-09,24;UBERON:0000025,4.40e-09,192;UBERON:0001456,6.79e-09,22;UBERON:0000483,3.99e-08,306;UBERON:0001801,4.48e-08,14;UBERON:0009663,5.44e-08,7;UBERON:0002037,7.13e-08,6;UBERON:0006215,7.13e-08,6;UBERON:0001871,7.67e-08,6;UBERON:0000119,7.87e-08,309;UBERON:0001894,1.07e-07,7;UBERON:0006222,1.07e-07,7;UBERON:0002298,3.54e-07,6;UBERON:0000200,9.82e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1138270726735,6.9360235023046,9.40364164434263,28.9098347002367,24.774270938192,16.3205431473244,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,1.5905718941022,0,52.0886842574014,27.0509864904328,30.3030010641285,2.0956652079634,8.74308691902101,14.4605932685927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,1.96764655938411,1.15235184896,0,0,0,0,0.352303495931295,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4351170855109,0.427114777637135,1.05965950579781,0.900273288253207,0.206105058476878,0,0.37223371266318,3.03797398034279,2.33848812386877,0.252433774244115,1.01254888506529,0,0,0.10075209822764,0,0.193260853163297,0.545492241181669,0,0.365921118388786,0.397589304964456,2.67246068599892,5.70135802584537,1.7662459561294,0.36497735907583,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.4214427859729,0,0,0.100528972411631,0.0925884451585296,0,0,21.649701303791,37.5614512119249,31.9351648321435,0,0,0.190254152234598,0,0,0,0,0,0,3.19166043577833,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0.179060963239896,0,0,0,0,80.5479958785209,49.4531444658963,6.95959931499926,7.87326447071439,20.4140400529012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0.492762936082855,0,0,0,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,9.4886546293064,17.3847762220844,29.2840555197873,0,0.640986253728404,0.990113999047056,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0,0,0,0,0,2.46426864140871,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0.202910376962704,0.92947049429925,0,0,0,0,0,1.26664581178598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,31.120107429591,0,0,0,0,0,0,2.54008299268659,0,0,0,0,2.50634477090067,0,0.1605880751037,0,0,0,0,0,0,0,0,9.84699191581699,0,0,0,11.6027135053096,0,1.45632626099416,0,24.4357086253515,0,0,0,13.9180670687282,14.6296193066933,18.3659363287795,1.31843099381408,0,0.796991953004279,0,66.0063799378203,11.86316717025,0,0,0.449341755736634,2.68531762013414,0,0,0,0,17.4479894297139,11.5960122702314,7.98455192004777,0,0,0,0,0,6.14607972596635,23.0978060071781,1.16641845353302,75.0059978111823,24.8007588027875,8.20055782652774,212.088613480746,123.517033343178,54.9718571253598,9.87234287192876,4.90223085835456,0,0,0,0,5.56497395340587,3.80265801727028,0,0,0,0,0,0,0,0.392125068635479,0,3.60532092175952,0,8.65092064564911,0.163232808159148,0,0,0,0.353830258013357,0.611030144933625,53.3738031625119,32.0030601871442,27.2541288209239,12.8736163993093,0,7.02793337176017,0,8.41357861407986,6.5550702474205,0,10.8891644443797,4.89716418608784,0.505492637027904,4.66002600184927,6.11760329243758,0,0,0,0,0.853828638089378,0,4.16543372004314,0.489961987071888,0.783532859223623,0,25.2819467733276,7.45023750925956,11.1826655141864,6.15865927899069,0,0.0882561266915003,18.5304207440037,0,2.18586072873289,10.2563489448524,4.69323318563527,0,0,2.79733453414982,3.45817001169854,57.8409810637874,2.23073497220554,6.33841111147859,10.8099705941926,0.235694034616795,0,0.104602846312333,0.203996435272644,0.288950589901519,28.2197535693601,8.89884962797955,0,8.16554338697919,0.262887354279314,0,0,0,0.399358000997982,0,0,0,0,0,0,0.247247575143499,0,9.64589318844538,0,28.6282688331349,17.5702393883933,0,0,0,0,0,13.3041529081074,0,0,0,0,3.5857467866569,0.959575986597226,0,0,0,0,0,0,20.3541325656229,0,0,0.226624183040251,0,0,16.2896525015554,7.66949090107602,0.171086837884329,7.04815022316672,0,0,0,0,0.197611631897944,14.8586970024693,0,0,0,0,0,0,11.5188863395708,18.5479922650984,9.26412887228099,25.2300046103631,20.8546616889282,13.7854014529871,0,0.124980407962107,0,0,3.52898729547258,40.7451368051987,5.36207805860053,0,0,0,0,0.50313580350515,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6156803500518,0,5.78806185809585,0,0.895444205407437,0,0,9.71790302702346,2.89371057406372,13.5153952522458,3.07489822305536,8.63575854327997,8.20421881678932,8.84853991371077,0,0,0,19.3289810819383,0.245772908753719,0,0,9.17548875369612,0,0,1.28874165176289,1.81843360035278,5.59869534029676,0,10.0277074598914,1.72992536041486,0,0.169732529954025,1.06287460050841,0.743614585554013,2.79322458986622,0.636008701306837,0,0,0,0,10.8547390413017,18.420554922326,11.0147362749434,5.33302547025963,3.27693205088234,9.12875732527676,13.8869055243392,0,0,2.12345502025933,0,0,0,9.66503896484141,0,0,1.21023041222112,0.781514011233092,0,0.327543835020193,5.76638736246476,9.65787460043044,16.4026400708908,17.36169090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| ||
|short_description=p1@PAX6 | |||
}} | }} |
Latest revision as of 14:58, 17 September 2015
Short description: | p1@PAX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAX6_5end |
Coexpression cluster: | C798_cerebellum_small_carcinosarcoma_argyrophil_Neural_gastric_Ciliary |
Association with transcript: | 0bp_to_ENST00000527769_5end |
EntrezGene: | PAX6 |
HGNC: | 8620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 2.61e-08 | 7 |
macroglial cell | 2.61e-08 | 7 |
astrocyte | 2.61e-08 | 7 |
oligodendrocyte precursor cell | 2.61e-08 | 7 |
neural cell | 1.53e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.82e-12 | 143 |
carcinoma | 2.60e-08 | 106 |
disease of cellular proliferation | 8.35e-08 | 239 |
cancer | 1.36e-07 | 235 |