FFCP PHASE1:Hg19::chr1:155100387..155100398,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1942 | |EntrezGene=1942 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3221 | |HGNC=3221 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_ENST00000469878_5end | |association_with_transcript=23bp_to_ENST00000469878_5end | ||
|cluster_id=chr1:155100387..155100398,+ | |||
|coexpression_cluster_id=C3876 | |coexpression_cluster_id=C3876 | ||
|description=CAGE_peak_3_at_EFNA1_5end | |description=CAGE_peak_3_at_EFNA1_5end | ||
|id=chr1:155100387..155100398,+ | |id=chr1:155100387..155100398,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.05e-49!254;CL:0000223!1.03e-18!59;CL:0002139!7.09e-15!24;CL:0000076!5.06e-14!62;CL:0000115!5.97e-14!35;CL:0002078!5.52e-13!44;CL:0002076!1.50e-12!43;CL:0000213!6.41e-12!57;CL:0000215!6.41e-12!57;CL:0000071!5.64e-11!18;CL:0002546!5.64e-11!18;CL:0002321!1.65e-07!248;CL:0000220!1.66e-07!246;CL:0000181!5.01e-07!12;CL:0000417!5.01e-07!12;CL:0000668!5.01e-07!12;CL:0000414!5.01e-07!12;CL:0000412!5.01e-07!12;CL:0000182!5.01e-07!12;CL:0002251!8.81e-07!21 | |ontology_enrichment_celltype=CL:0000066!1.05e-49!254;CL:0000223!1.03e-18!59;CL:0002139!7.09e-15!24;CL:0000076!5.06e-14!62;CL:0000115!5.97e-14!35;CL:0002078!5.52e-13!44;CL:0002076!1.50e-12!43;CL:0000213!6.41e-12!57;CL:0000215!6.41e-12!57;CL:0000071!5.64e-11!18;CL:0002546!5.64e-11!18;CL:0002321!1.65e-07!248;CL:0000220!1.66e-07!246;CL:0000181!5.01e-07!12;CL:0000417!5.01e-07!12;CL:0000668!5.01e-07!12;CL:0000414!5.01e-07!12;CL:0000412!5.01e-07!12;CL:0000182!5.01e-07!12;CL:0002251!8.81e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002139;6.24e-20;24!CL:0000115;3.78e-16;36!CL:0000071;1.39e-14;18!CL:0002076;9.60e-12;42!CL:0002078;1.23e-11;45!CL:0002251;1.97e-09;20!CL:0000213;1.68e-08;58!CL:0000215;1.68e-08;58!CL:1000413;1.30e-07;9!CL:1000449;2.64e-07;15!CL:0000076;2.70e-07;63!CL:0000182;3.29e-07;12!CL:0002138;6.01e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.33e-49,253;CL:0000223,1.31e-21,58;CL:0002139,6.47e-20,24;CL:0000115,5.19e-19,36;CL:0002078,2.86e-17,45;CL:0002076,9.75e-16,42;CL:0000071,1.56e-14,18;CL:0002546,1.56e-14,18;CL:0000213,2.54e-13,58;CL:0000215,2.54e-13,58;CL:0000076,1.25e-12,63;CL:0002251,1.82e-09,20;CL:0002321,1.36e-07,250;CL:1000413,1.66e-07,9;CL:0000182,2.43e-07,12;CL:1000449,3.65e-07,15;CL:0005020,5.51e-07,6;CL:0002138,5.51e-07,6;CL:0005022,5.51e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.39e-14;18!CL:0000223;3.11e-12;58!UBERON:0008947;5.58e-09;29!CL:0005022;6.01e-07;6 | |||
|ontology_enrichment_disease=DOID:305!1.59e-22!106;DOID:0050687!1.60e-17!143;DOID:299!2.18e-08!25 | |ontology_enrichment_disease=DOID:305!1.59e-22!106;DOID:0050687!1.60e-17!143;DOID:299!2.18e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:299;7.87e-08;25!DOID:305;4.05e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.64e-19,106;DOID:0050687,2.13e-13,143;DOID:299,1.21e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.39e-22!169;UBERON:0000925!3.39e-22!169;UBERON:0006595!3.39e-22!169;UBERON:0001007!3.08e-18!155;UBERON:0001555!3.08e-18!155;UBERON:0007026!3.08e-18!155;UBERON:0004921!6.91e-18!129;UBERON:0004185!6.91e-18!129;UBERON:0001041!1.71e-16!98;UBERON:0000477!3.61e-16!286;UBERON:0000077!1.31e-15!130;UBERON:0004111!7.74e-15!241;UBERON:0005177!4.67e-14!107;UBERON:0005911!1.03e-12!82;UBERON:0001004!1.04e-11!72;UBERON:0000064!1.05e-11!219;UBERON:0000467!1.18e-11!625;UBERON:0000062!1.46e-11!511;UBERON:0000468!1.49e-11!659;UBERON:0000480!1.80e-11!626;UBERON:0000466!5.49e-11!126;UBERON:0001986!5.64e-11!18;UBERON:0004638!5.64e-11!18;UBERON:0004852!5.64e-11!18;UBERON:0000483!1.48e-10!309;UBERON:0000119!3.16e-10!312;UBERON:0000065!4.45e-10!53;UBERON:0000922!4.96e-10!612;UBERON:0000481!5.14e-10!347;UBERON:0000025!5.58e-10!194;UBERON:0002050!1.72e-09!605;UBERON:0005423!1.72e-09!605;UBERON:0005172!1.86e-09!55;UBERON:0005173!1.86e-09!55;UBERON:0008947!2.22e-09!38;UBERON:0003258!2.22e-09!38;UBERON:0000923!2.81e-09!604;UBERON:0005291!2.81e-09!604;UBERON:0006598!2.81e-09!604;UBERON:0002532!2.81e-09!604;UBERON:0002365!3.84e-09!31;UBERON:0002330!3.84e-09!31;UBERON:0001048!5.37e-09!168;UBERON:0009569!6.48e-09!113;UBERON:0000487!1.14e-08!22;UBERON:0002530!3.42e-08!59;UBERON:0003929!7.06e-08!54;UBERON:0006914!1.77e-07!25;UBERON:0000072!2.28e-07!46;UBERON:0009497!2.90e-07!25;UBERON:0000015!2.90e-07!25;UBERON:0002423!2.90e-07!25;UBERON:0006235!2.90e-07!25;UBERON:0004161!2.90e-07!25;UBERON:0000058!3.67e-07!26;UBERON:0002417!5.74e-07!61;UBERON:0000916!5.74e-07!61;UBERON:0000464!6.81e-07!104;UBERON:0007023!7.30e-07!115 | |ontology_enrichment_uberon=UBERON:0004119!3.39e-22!169;UBERON:0000925!3.39e-22!169;UBERON:0006595!3.39e-22!169;UBERON:0001007!3.08e-18!155;UBERON:0001555!3.08e-18!155;UBERON:0007026!3.08e-18!155;UBERON:0004921!6.91e-18!129;UBERON:0004185!6.91e-18!129;UBERON:0001041!1.71e-16!98;UBERON:0000477!3.61e-16!286;UBERON:0000077!1.31e-15!130;UBERON:0004111!7.74e-15!241;UBERON:0005177!4.67e-14!107;UBERON:0005911!1.03e-12!82;UBERON:0001004!1.04e-11!72;UBERON:0000064!1.05e-11!219;UBERON:0000467!1.18e-11!625;UBERON:0000062!1.46e-11!511;UBERON:0000468!1.49e-11!659;UBERON:0000480!1.80e-11!626;UBERON:0000466!5.49e-11!126;UBERON:0001986!5.64e-11!18;UBERON:0004638!5.64e-11!18;UBERON:0004852!5.64e-11!18;UBERON:0000483!1.48e-10!309;UBERON:0000119!3.16e-10!312;UBERON:0000065!4.45e-10!53;UBERON:0000922!4.96e-10!612;UBERON:0000481!5.14e-10!347;UBERON:0000025!5.58e-10!194;UBERON:0002050!1.72e-09!605;UBERON:0005423!1.72e-09!605;UBERON:0005172!1.86e-09!55;UBERON:0005173!1.86e-09!55;UBERON:0008947!2.22e-09!38;UBERON:0003258!2.22e-09!38;UBERON:0000923!2.81e-09!604;UBERON:0005291!2.81e-09!604;UBERON:0006598!2.81e-09!604;UBERON:0002532!2.81e-09!604;UBERON:0002365!3.84e-09!31;UBERON:0002330!3.84e-09!31;UBERON:0001048!5.37e-09!168;UBERON:0009569!6.48e-09!113;UBERON:0000487!1.14e-08!22;UBERON:0002530!3.42e-08!59;UBERON:0003929!7.06e-08!54;UBERON:0006914!1.77e-07!25;UBERON:0000072!2.28e-07!46;UBERON:0009497!2.90e-07!25;UBERON:0000015!2.90e-07!25;UBERON:0002423!2.90e-07!25;UBERON:0006235!2.90e-07!25;UBERON:0004161!2.90e-07!25;UBERON:0000058!3.67e-07!26;UBERON:0002417!5.74e-07!61;UBERON:0000916!5.74e-07!61;UBERON:0000464!6.81e-07!104;UBERON:0007023!7.30e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.39e-14;18!UBERON:0001986;1.39e-14;18!UBERON:0004852;1.39e-14;18!UBERON:0000487;2.59e-12;22!UBERON:0006914;5.05e-11;25!UBERON:0000490;1.66e-10;33!UBERON:0002365;8.42e-10;31!UBERON:0002330;8.42e-10;31!UBERON:0000065;6.62e-09;44!UBERON:0002423;1.61e-08;25!UBERON:0001737;2.66e-08;9!UBERON:0001557;2.66e-08;9!UBERON:0003915;1.30e-07;9!UBERON:0004700;1.30e-07;9!UBERON:0001917;1.30e-07;9!UBERON:0000353;1.51e-07;15!UBERON:0006555;2.64e-07;15!UBERON:0004819;2.64e-07;15!UBERON:0001285;2.64e-07;15!UBERON:0007684;2.64e-07;15!UBERON:0000072;8.29e-07;37 | |||
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| ||
|short_description=p3@EFNA1 | |short_description=p3@EFNA1 | ||
}} | }} |
Latest revision as of 11:22, 17 September 2015
Short description: | p3@EFNA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_EFNA1_5end |
Coexpression cluster: | C3876_colon_liver_Hepatocyte_choriocarcinoma_chorionic_Renal_serous |
Association with transcript: | 23bp_to_ENST00000469878_5end |
EntrezGene: | EFNA1 |
HGNC: | 3221 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.33e-49 | 253 |
endodermal cell | 1.31e-21 | 58 |
endothelial cell of vascular tree | 6.47e-20 | 24 |
endothelial cell | 5.19e-19 | 36 |
meso-epithelial cell | 2.86e-17 | 45 |
endo-epithelial cell | 9.75e-16 | 42 |
blood vessel endothelial cell | 1.56e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.56e-14 | 18 |
lining cell | 2.54e-13 | 58 |
barrier cell | 2.54e-13 | 58 |
squamous epithelial cell | 1.25e-12 | 63 |
epithelial cell of alimentary canal | 1.82e-09 | 20 |
embryonic cell | 1.36e-07 | 250 |
endothelial cell of artery | 1.66e-07 | 9 |
hepatocyte | 2.43e-07 | 12 |
epithelial cell of nephron | 3.65e-07 | 15 |
lymphangioblast | 5.51e-07 | 6 |
endothelial cell of lymphatic vessel | 5.51e-07 | 6 |
vascular lymphangioblast | 5.51e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.64e-19 | 106 |
cell type cancer | 2.13e-13 | 143 |
adenocarcinoma | 1.21e-07 | 25 |