FFCP PHASE1:Hg19::chr1:28844778..28844807,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1104 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1913 | |||
|TSSclassifier=strong | |||
|UniProt=C9JW69 | |||
|association_with_transcript=0bp_to_ENST00000411533_5end | |||
|cluster_id=chr1:28844778..28844807,+ | |||
|coexpression_cluster_id=C3964 | |||
|description=CAGE_peak_3_at_RCC1_5end | |||
|id=chr1:28844778..28844807,+ | |||
|ontology_enrichment_celltype=CL:0000012!7.96e-28!682;CL:0000548!9.46e-28!679;CL:0000004!9.46e-28!679;CL:0000255!9.46e-28!679;CL:0000066!5.42e-26!254;CL:0000003!5.63e-17!722;CL:0000063!1.26e-16!578;CL:0000144!2.76e-11!625;CL:0002321!3.02e-10!248;CL:0000220!1.13e-09!246;CL:1000497!1.31e-07!18;CL:0002518!1.31e-07!18;CL:1000449!2.02e-07!16;CL:0000076!3.37e-07!62;CL:0002371!9.77e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.31e-09;17!CL:0002518;3.31e-09;17!CL:1000449;4.83e-09;15!CL:0002681;4.80e-08;12!CL:0002584;4.80e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.86e-26,253;CL:1000497,4.64e-09,17;CL:0002518,4.64e-09,17;CL:1000449,6.38e-09,15;CL:0002321,1.35e-08,250;CL:0002681,5.23e-08,12;CL:0002584,5.23e-08,12;CL:0000076,5.13e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.59e-30!235;DOID:14566!1.54e-28!239;DOID:305!3.27e-18!106;DOID:0050687!4.43e-16!143;DOID:0050686!5.26e-16!137;DOID:2531!1.21e-15!51;DOID:0060083!1.21e-15!51;DOID:1240!3.21e-14!39;DOID:8692!2.27e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.77e-13;31!DOID:1240;3.37e-12;39!DOID:2531;1.66e-10;51!DOID:0060083;1.66e-10;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.76e-31,235;DOID:14566,3.53e-29,239;DOID:305,7.09e-19,106;DOID:0050687,4.39e-17,143;DOID:2531,1.12e-16,51;DOID:0060083,1.12e-16,51;DOID:0050686,2.54e-16,137;DOID:1240,2.72e-15,39;DOID:8692,2.76e-13,31 | |||
|ontology_enrichment_uberon=UBERON:0008947!1.69e-07!38;UBERON:0003258!1.69e-07!38;UBERON:0004211!2.02e-07!16;UBERON:0001285!2.02e-07!16;UBERON:0007684!2.02e-07!16;UBERON:0003220!2.02e-07!16;UBERON:0004208!2.02e-07!16;UBERON:0000072!5.42e-07!46;UBERON:0002113!8.77e-07!27;UBERON:0003918!8.77e-07!27;UBERON:0005095!8.77e-07!27;UBERON:0007687!8.77e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.83e-09;15!UBERON:0004819;4.83e-09;15!UBERON:0001285;4.83e-09;15!UBERON:0007684;4.83e-09;15!UBERON:0002113;7.94e-09;24!UBERON:0011143;7.94e-09;24!UBERON:0001225;4.80e-08;12!UBERON:0008987;4.80e-08;12!UBERON:0000353;9.50e-08;15!UBERON:0000072;2.88e-07;37!UBERON:0001737;4.95e-07;9!UBERON:0001557;4.95e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,6.38e-09,15;UBERON:0009773,6.38e-09,15;UBERON:0001231,6.38e-09,15;UBERON:0001285,6.38e-09,15;UBERON:0007684,6.38e-09,15;UBERON:0004208,6.38e-09,15;UBERON:0001225,5.23e-08,12;UBERON:0008987,5.23e-08,12;UBERON:0006555,7.45e-08,16;UBERON:0004819,7.45e-08,16;UBERON:0000353,9.92e-08,15;UBERON:0008947,1.66e-07,38;UBERON:0003258,1.66e-07,38;UBERON:0002113,2.65e-07,26;UBERON:0003918,2.65e-07,26;UBERON:0011143,2.65e-07,26;UBERON:0005095,2.65e-07,26;UBERON:0007687,2.65e-07,26;UBERON:0001737,5.17e-07,9 | |||
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| |||
|short_description=p3@RCC1 | |||
}} |
Latest revision as of 10:36, 17 September 2015
Short description: | p3@RCC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RCC1_5end |
Coexpression cluster: | C3964_chronic_Mesenchymal_hepatocellular_hereditary_acute_rhabdomyosarcoma_Skeletal |
Association with transcript: | 0bp_to_ENST00000411533_5end |
EntrezGene: | RCC1 |
HGNC: | 1913 |
UniProt: | C9JW69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.86e-26 | 253 |
kidney cell | 4.64e-09 | 17 |
kidney epithelial cell | 4.64e-09 | 17 |
epithelial cell of nephron | 6.38e-09 | 15 |
embryonic cell | 1.35e-08 | 250 |
kidney cortical cell | 5.23e-08 | 12 |
renal cortical epithelial cell | 5.23e-08 | 12 |
squamous epithelial cell | 5.13e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 6.38e-09 | 15 |
renal tubule | 6.38e-09 | 15 |
nephron tubule | 6.38e-09 | 15 |
nephron | 6.38e-09 | 15 |
uriniferous tubule | 6.38e-09 | 15 |
nephrogenic mesenchyme | 6.38e-09 | 15 |
cortex of kidney | 5.23e-08 | 12 |
renal parenchyma | 5.23e-08 | 12 |
excretory tube | 7.45e-08 | 16 |
kidney epithelium | 7.45e-08 | 16 |
parenchyma | 9.92e-08 | 15 |
respiratory primordium | 1.66e-07 | 38 |
endoderm of foregut | 1.66e-07 | 38 |
kidney | 2.65e-07 | 26 |
kidney mesenchyme | 2.65e-07 | 26 |
upper urinary tract | 2.65e-07 | 26 |
kidney rudiment | 2.65e-07 | 26 |
kidney field | 2.65e-07 | 26 |
larynx | 5.17e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.76e-31 | 235 |
disease of cellular proliferation | 3.53e-29 | 239 |
carcinoma | 7.09e-19 | 106 |
cell type cancer | 4.39e-17 | 143 |
hematologic cancer | 1.12e-16 | 51 |
immune system cancer | 1.12e-16 | 51 |
organ system cancer | 2.54e-16 | 137 |
leukemia | 2.72e-15 | 39 |
myeloid leukemia | 2.76e-13 | 31 |