FFCP PHASE1:Hg19::chr2:45169193..45169219,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=156bp_to_NM_005413,uc002run.1_5end | |association_with_transcript=156bp_to_NM_005413,uc002run.1_5end | ||
|cluster_id=chr2:45169193..45169219,+ | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_3_at_SIX3_5end | |description=CAGE_peak_3_at_SIX3_5end | ||
|id=chr2:45169193..45169219,+ | |id=chr2:45169193..45169219,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.44e-10!5;CL:0000306!1.12e-09!4;CL:0002222!1.12e-09!4;CL:0002224!1.12e-09!4;CL:0000075!6.59e-09!27;CL:0002586!7.25e-08!3;CL:0000064!8.26e-08!3;CL:0005012!8.26e-08!3;CL:0000067!8.26e-08!3;CL:0002304!8.26e-08!3;CL:0000147!7.13e-07!14 | |ontology_enrichment_celltype=CL:0002322!2.44e-10!5;CL:0000306!1.12e-09!4;CL:0002222!1.12e-09!4;CL:0002224!1.12e-09!4;CL:0000075!6.59e-09!27;CL:0002586!7.25e-08!3;CL:0000064!8.26e-08!3;CL:0005012!8.26e-08!3;CL:0000067!8.26e-08!3;CL:0002304!8.26e-08!3;CL:0000147!7.13e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.29e-16;5!CL:0000306;2.58e-15;4!CL:0002222;2.58e-15;4!CL:0002224;2.58e-15;4!CL:0002586;2.78e-12;3!CL:0000064;3.66e-12;3!CL:0000067;3.66e-12;3!CL:0005012;3.66e-12;3!CL:0002304;3.66e-12;3!CL:0000147;7.39e-12;14!CL:0000075;1.43e-11;27!CL:0002321;3.82e-10;15!CL:0000149;2.65e-09;4!CL:0002549;4.94e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.82e-16,5;CL:0000306,2.41e-15,4;CL:0002222,2.41e-15,4;CL:0002224,2.41e-15,4;CL:0002586,2.84e-12,3;CL:0000064,3.54e-12,3;CL:0000067,3.54e-12,3;CL:0005012,3.54e-12,3;CL:0002304,3.54e-12,3;CL:0000147,8.91e-12,14;CL:0000075,1.57e-11,27;CL:0000149,2.69e-09,4;CL:0002549,5.03e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.30e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0007625;1.12e-39;11!UBERON:0000970;7.45e-34;20!UBERON:0002104;4.54e-32;21!UBERON:0000019;9.94e-31;19!UBERON:0000047;9.94e-31;19!UBERON:0004088;9.94e-31;19!UBERON:0010230;9.94e-31;19!UBERON:0000020;5.76e-29;23!UBERON:0001032;1.31e-27;24!UBERON:0004456;1.31e-27;24!UBERON:0001456;1.72e-27;21!UBERON:0000966;5.59e-19;5!UBERON:0005388;5.59e-19;5!UBERON:0001802;5.59e-19;5!UBERON:0002420;1.77e-18;9!UBERON:0007245;1.77e-18;9!UBERON:0010009;1.77e-18;9!UBERON:0010011;1.77e-18;9!UBERON:0000454;1.77e-18;9!UBERON:0009663;6.89e-18;7!UBERON:0001801;5.43e-16;14!UBERON:0000488;1.53e-15;4!UBERON:0010077;2.58e-15;4!UBERON:0005389;2.58e-15;4!UBERON:0000484;2.58e-15;4!UBERON:0000965;2.58e-15;4!UBERON:0001803;2.58e-15;4!UBERON:0000369;5.76e-15;4!UBERON:0002435;5.76e-15;4!UBERON:0000204;5.76e-15;4!UBERON:0000125;9.27e-14;9!UBERON:0002308;9.27e-14;9!UBERON:0001894;2.73e-12;7!UBERON:0001781;2.78e-12;3!UBERON:0001782;2.78e-12;3!UBERON:0002780;2.99e-12;41!UBERON:0001890;2.99e-12;41!UBERON:0001778;3.66e-12;3!UBERON:0001775;3.66e-12;3!UBERON:0010371;5.42e-12;31!UBERON:0005383;8.72e-12;3!UBERON:0005382;8.72e-12;3!UBERON:0006876;1.40e-11;11!UBERON:0002203;2.33e-10;6!UBERON:0001768;2.33e-10;6!UBERON:0002200;2.33e-10;6!UBERON:0000073;2.02e-08;53!UBERON:0002616;2.02e-08;53!UBERON:0000007;2.30e-08;2!UBERON:0001873;2.30e-08;2!UBERON:0002791;2.44e-08;32!UBERON:0000955;4.15e-08;68!UBERON:0005629;4.94e-08;2!UBERON:0005358;4.94e-08;2!UBERON:0001886;4.94e-08;2!UBERON:0004086;4.94e-08;2!UBERON:0005282;4.94e-08;2!UBERON:0005281;4.94e-08;2!UBERON:0001869;5.07e-08;32!UBERON:0001444;9.06e-08;48!UBERON:0001875;9.74e-08;2!UBERON:0006514;9.74e-08;2!UBERON:0000033;1.42e-07;50!UBERON:0003528;1.56e-07;34!UBERON:0002020;1.56e-07;34!UBERON:0001897;2.06e-07;2!UBERON:0010225;2.06e-07;2!UBERON:0000922;2.22e-07;49!UBERON:0001016;4.02e-07;83!UBERON:0001893;4.09e-07;34!UBERON:0001017;8.31e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.01e-39,11;UBERON:0003056,1.70e-38,61;UBERON:0000970,4.36e-32,21;UBERON:0002104,4.36e-32,21;UBERON:0000019,4.74e-29,20;UBERON:0000047,4.74e-29,20;UBERON:0010312,4.74e-29,20;UBERON:0004088,4.74e-29,20;UBERON:0010230,4.74e-29,20;UBERON:0003072,4.74e-29,20;UBERON:0004128,4.74e-29,20;UBERON:0003071,4.74e-29,20;UBERON:0000020,1.27e-27,24;UBERON:0001032,1.27e-27,24;UBERON:0004456,1.27e-27,24;UBERON:0002346,2.87e-27,86;UBERON:0003075,7.20e-27,82;UBERON:0007284,7.20e-27,82;UBERON:0001456,4.11e-26,22;UBERON:0010371,1.05e-19,104;UBERON:0002420,1.69e-18,9;UBERON:0007245,1.69e-18,9;UBERON:0010009,1.69e-18,9;UBERON:0010011,1.69e-18,9;UBERON:0000454,1.69e-18,9;UBERON:0010314,6.38e-18,132;UBERON:0009663,7.23e-18,7;UBERON:0005085,1.37e-17,31;UBERON:0004121,1.42e-17,171;UBERON:0000924,1.42e-17,171;UBERON:0006601,1.42e-17,171;UBERON:0001801,5.08e-16,14;UBERON:0000966,9.69e-16,6;UBERON:0005388,9.69e-16,6;UBERON:0001802,9.69e-16,6;UBERON:0000488,1.45e-15,4;UBERON:0010077,2.41e-15,4;UBERON:0005389,2.41e-15,4;UBERON:0000484,2.41e-15,4;UBERON:0002546,2.41e-15,4;UBERON:0000965,2.41e-15,4;UBERON:0001803,2.41e-15,4;UBERON:0003073,2.41e-15,4;UBERON:0005426,2.41e-15,4;UBERON:0002780,5.12e-15,41;UBERON:0001890,5.12e-15,41;UBERON:0003080,5.12e-15,41;UBERON:0006240,5.12e-15,41;UBERON:0000369,7.02e-15,4;UBERON:0002435,7.02e-15,4;UBERON:0000204,7.02e-15,4;UBERON:0010082,7.02e-15,4;UBERON:0001016,5.04e-14,89;UBERON:0000125,9.61e-14,9;UBERON:0002308,9.61e-14,9;UBERON:0000955,3.95e-13,68;UBERON:0006238,3.95e-13,68;UBERON:0001017,4.70e-13,81;UBERON:0001894,2.49e-12,7;UBERON:0006222,2.49e-12,7;UBERON:0001782,2.84e-12,3;UBERON:0005424,2.84e-12,3;UBERON:0001778,3.54e-12,3;UBERON:0001775,3.54e-12,3;UBERON:0005383,9.73e-12,3;UBERON:0005382,9.73e-12,3;UBERON:0006876,1.37e-11,11;UBERON:0000073,6.69e-11,53;UBERON:0002616,6.69e-11,53;UBERON:0002203,2.25e-10,6;UBERON:0001768,2.25e-10,6;UBERON:0002200,2.25e-10,6;UBERON:0001049,3.79e-10,56;UBERON:0005068,3.79e-10,56;UBERON:0006241,3.79e-10,56;UBERON:0007135,3.79e-10,56;UBERON:0001444,5.49e-10,49;UBERON:0000033,1.02e-09,56;UBERON:0001781,2.69e-09,4;UBERON:0002791,1.46e-08,32;UBERON:0001869,1.46e-08,32;UBERON:0000153,1.82e-08,62;UBERON:0007811,1.82e-08,62;UBERON:0000007,2.06e-08,2;UBERON:0001873,2.56e-08,2;UBERON:0010122,2.56e-08,2;UBERON:0005629,5.03e-08,2;UBERON:0005358,5.03e-08,2;UBERON:0001886,5.03e-08,2;UBERON:0004086,5.03e-08,2;UBERON:0005282,5.03e-08,2;UBERON:0005281,5.03e-08,2;UBERON:0003528,5.79e-08,34;UBERON:0002020,5.79e-08,34;UBERON:0001893,5.79e-08,34;UBERON:0001875,8.49e-08,2;UBERON:0006514,8.49e-08,2;UBERON:0000076,1.16e-07,8;UBERON:0001897,1.92e-07,2;UBERON:0010225,1.92e-07,2 | |||
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|short_description=p3@SIX3 | |short_description=p3@SIX3 | ||
}} | }} |
Latest revision as of 09:42, 17 September 2015
Short description: | p3@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 156bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.82e-16 | 5 |
crystallin accumulating cell | 2.41e-15 | 4 |
vertebrate lens cell | 2.41e-15 | 4 |
lens epithelial cell | 2.41e-15 | 4 |
retinal pigment epithelial cell | 2.84e-12 | 3 |
ciliated cell | 3.54e-12 | 3 |
ciliated epithelial cell | 3.54e-12 | 3 |
multi-ciliated epithelial cell | 3.54e-12 | 3 |
non-pigmented ciliary epithelial cell | 3.54e-12 | 3 |
pigment cell | 8.91e-12 | 14 |
columnar/cuboidal epithelial cell | 1.57e-11 | 27 |
visual pigment cell | 2.69e-09 | 4 |
fibroblast of choroid plexus | 5.03e-08 | 2 |