FFCP PHASE1:Hg19::chr2:45168834..45168847,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=-54bp_to_ENST00000260653_5end | |association_with_transcript=-54bp_to_ENST00000260653_5end | ||
|cluster_id=chr2:45168834..45168847,+ | |||
|coexpression_cluster_id=C573 | |coexpression_cluster_id=C573 | ||
|description=CAGE_peak_2_at_SIX3_5end | |description=CAGE_peak_2_at_SIX3_5end | ||
|id=chr2:45168834..45168847,+ | |id=chr2:45168834..45168847,+ | ||
|ontology_enrichment_celltype=CL:0002322!3.98e-08!5 | |ontology_enrichment_celltype=CL:0002322!3.98e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.35e-13;5!CL:0000075;1.52e-10;27!CL:0000064;4.92e-10;3!CL:0000067;4.92e-10;3!CL:0005012;4.92e-10;3!CL:0002304;4.92e-10;3!CL:0002586;5.87e-10;3!CL:0000147;3.41e-09;14!CL:0002321;8.95e-08;15!CL:0000710;9.98e-08;20!CL:0000149;1.53e-07;4!CL:0000306;1.91e-07;4!CL:0002222;1.91e-07;4!CL:0002224;1.91e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.16e-13,5;CL:0000075,1.23e-10,27;CL:0000064,5.00e-10,3;CL:0000067,5.00e-10,3;CL:0005012,5.00e-10,3;CL:0002304,5.00e-10,3;CL:0002586,5.79e-10,3;CL:0000147,3.06e-09,14;CL:0000133,1.22e-08,59;CL:0000710,8.36e-08,20;CL:0000149,1.51e-07,4;CL:0000306,1.80e-07,4;CL:0002222,1.80e-07,4;CL:0002224,1.80e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0010122;7.12e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.51e-32!90;UBERON:0003056!6.37e-32!61;UBERON:0003075!9.67e-32!86;UBERON:0007284!9.67e-32!86;UBERON:0000073!1.76e-26!94;UBERON:0001016!1.76e-26!94;UBERON:0005743!2.45e-25!86;UBERON:0002616!1.36e-24!59;UBERON:0002780!1.53e-22!41;UBERON:0001890!1.53e-22!41;UBERON:0006240!1.53e-22!41;UBERON:0003080!8.60e-22!42;UBERON:0000955!1.44e-21!69;UBERON:0006238!1.44e-21!69;UBERON:0001049!3.13e-21!57;UBERON:0005068!3.13e-21!57;UBERON:0006241!3.13e-21!57;UBERON:0007135!3.13e-21!57;UBERON:0001017!4.22e-21!82;UBERON:0000924!4.08e-20!173;UBERON:0006601!4.08e-20!173;UBERON:0004121!2.97e-19!169;UBERON:0000033!7.07e-19!123;UBERON:0000153!4.62e-18!129;UBERON:0007811!4.62e-18!129;UBERON:0002020!6.07e-18!34;UBERON:0003528!6.07e-18!34;UBERON:0002791!3.57e-17!33;UBERON:0001893!1.78e-16!34;UBERON:0007625!5.10e-15!11;UBERON:0001869!1.32e-14!32;UBERON:0002308!9.86e-13!9;UBERON:0000125!9.86e-13!9;UBERON:0000970!2.35e-12!20;UBERON:0002104!1.44e-11!21;UBERON:0000019!4.54e-11!19;UBERON:0000047!4.54e-11!19;UBERON:0004088!4.54e-11!19;UBERON:0003072!4.54e-11!19;UBERON:0003071!4.54e-11!19;UBERON:0004128!4.54e-11!19;UBERON:0009663!6.79e-11!7;UBERON:0002420!1.21e-10!9;UBERON:0007245!1.21e-10!9;UBERON:0010009!1.21e-10!9;UBERON:0010011!1.21e-10!9;UBERON:0000454!1.21e-10!9;UBERON:0000020!3.29e-10!23;UBERON:0007023!8.63e-10!115;UBERON:0001456!1.15e-09!21;UBERON:0001032!1.28e-09!24;UBERON:0004456!1.28e-09!24;UBERON:0000966!3.42e-09!5;UBERON:0005388!3.42e-09!5;UBERON:0001802!3.42e-09!5;UBERON:0000956!6.39e-09!25;UBERON:0000203!6.39e-09!25;UBERON:0001894!4.64e-08!7;UBERON:0006222!4.64e-08!7;UBERON:0000488!9.48e-08!4;UBERON:0000369!2.54e-07!4;UBERON:0002435!2.54e-07!4;UBERON:0000204!2.54e-07!4;UBERON:0010082!2.54e-07!4;UBERON:0000064!5.42e-07!219;UBERON:0001264!6.58e-07!10;UBERON:0003922!6.58e-07!10;UBERON:0003923!6.58e-07!10;UBERON:0003924!6.58e-07!10;UBERON:0003921!6.58e-07!10 | |ontology_enrichment_uberon=UBERON:0002346!1.51e-32!90;UBERON:0003056!6.37e-32!61;UBERON:0003075!9.67e-32!86;UBERON:0007284!9.67e-32!86;UBERON:0000073!1.76e-26!94;UBERON:0001016!1.76e-26!94;UBERON:0005743!2.45e-25!86;UBERON:0002616!1.36e-24!59;UBERON:0002780!1.53e-22!41;UBERON:0001890!1.53e-22!41;UBERON:0006240!1.53e-22!41;UBERON:0003080!8.60e-22!42;UBERON:0000955!1.44e-21!69;UBERON:0006238!1.44e-21!69;UBERON:0001049!3.13e-21!57;UBERON:0005068!3.13e-21!57;UBERON:0006241!3.13e-21!57;UBERON:0007135!3.13e-21!57;UBERON:0001017!4.22e-21!82;UBERON:0000924!4.08e-20!173;UBERON:0006601!4.08e-20!173;UBERON:0004121!2.97e-19!169;UBERON:0000033!7.07e-19!123;UBERON:0000153!4.62e-18!129;UBERON:0007811!4.62e-18!129;UBERON:0002020!6.07e-18!34;UBERON:0003528!6.07e-18!34;UBERON:0002791!3.57e-17!33;UBERON:0001893!1.78e-16!34;UBERON:0007625!5.10e-15!11;UBERON:0001869!1.32e-14!32;UBERON:0002308!9.86e-13!9;UBERON:0000125!9.86e-13!9;UBERON:0000970!2.35e-12!20;UBERON:0002104!1.44e-11!21;UBERON:0000019!4.54e-11!19;UBERON:0000047!4.54e-11!19;UBERON:0004088!4.54e-11!19;UBERON:0003072!4.54e-11!19;UBERON:0003071!4.54e-11!19;UBERON:0004128!4.54e-11!19;UBERON:0009663!6.79e-11!7;UBERON:0002420!1.21e-10!9;UBERON:0007245!1.21e-10!9;UBERON:0010009!1.21e-10!9;UBERON:0010011!1.21e-10!9;UBERON:0000454!1.21e-10!9;UBERON:0000020!3.29e-10!23;UBERON:0007023!8.63e-10!115;UBERON:0001456!1.15e-09!21;UBERON:0001032!1.28e-09!24;UBERON:0004456!1.28e-09!24;UBERON:0000966!3.42e-09!5;UBERON:0005388!3.42e-09!5;UBERON:0001802!3.42e-09!5;UBERON:0000956!6.39e-09!25;UBERON:0000203!6.39e-09!25;UBERON:0001894!4.64e-08!7;UBERON:0006222!4.64e-08!7;UBERON:0000488!9.48e-08!4;UBERON:0000369!2.54e-07!4;UBERON:0002435!2.54e-07!4;UBERON:0000204!2.54e-07!4;UBERON:0010082!2.54e-07!4;UBERON:0000064!5.42e-07!219;UBERON:0001264!6.58e-07!10;UBERON:0003922!6.58e-07!10;UBERON:0003923!6.58e-07!10;UBERON:0003924!6.58e-07!10;UBERON:0003921!6.58e-07!10 | ||
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|short_description=p2@SIX3 | |short_description=p2@SIX3 | ||
}} | }} |
Latest revision as of 09:35, 17 September 2015
Short description: | p2@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | -54bp_to_ENST00000260653_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.16e-13 | 5 |
columnar/cuboidal epithelial cell | 1.23e-10 | 27 |
ciliated cell | 5.00e-10 | 3 |
ciliated epithelial cell | 5.00e-10 | 3 |
multi-ciliated epithelial cell | 5.00e-10 | 3 |
non-pigmented ciliary epithelial cell | 5.00e-10 | 3 |
retinal pigment epithelial cell | 5.79e-10 | 3 |
pigment cell | 3.06e-09 | 14 |
neurectodermal cell | 1.22e-08 | 59 |
neurecto-epithelial cell | 8.36e-08 | 20 |
visual pigment cell | 1.51e-07 | 4 |
crystallin accumulating cell | 1.80e-07 | 4 |
vertebrate lens cell | 1.80e-07 | 4 |
lens epithelial cell | 1.80e-07 | 4 |