FFCP PHASE1:Hg19::chr11:2182437..2182439,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=723961,3481,3630 | |EntrezGene=723961,3481,3630 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33527,5466,6081 | |HGNC=33527,5466,6081 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCM5,P01308,Q1WM24 | |UniProt=F8WCM5,P01308,Q1WM24 | ||
|association_with_transcript=0bp_to_ENST00000356578,ENST00000381319,ENST00000397270,NM_000207,NM_001042376,NM_001185097,NM_001185098,NR_003512,uc001lvi.2,uc001lvm.2,uc001lvo.1_5end | |association_with_transcript=0bp_to_ENST00000356578,ENST00000381319,ENST00000397270,NM_000207,NM_001042376,NM_001185097,NM_001185098,NR_003512,uc001lvi.2,uc001lvm.2,uc001lvo.1_5end | ||
|cluster_id=chr11:2182437..2182439,- | |||
|coexpression_cluster_id=C643 | |coexpression_cluster_id=C643 | ||
|description=CAGE_peak_16_at_IGF2_5end,CAGE_peak_1_at_INS-IGF2_5end,CAGE_peak_1_at_INS_5end | |description=CAGE_peak_16_at_IGF2_5end,CAGE_peak_1_at_INS-IGF2_5end,CAGE_peak_1_at_INS_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;2.47e-11;2 | |ontology_enrichment_celltype_v019=CL:0002535;2.47e-11;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,2.47e-11,2 | |||
|ontology_enrichment_development_v019=UBERON:0000358;5.16e-21;1 | |ontology_enrichment_development_v019=UBERON:0000358;5.16e-21;1 | ||
|ontology_enrichment_disease=DOID:178!3.58e-09!1;DOID:326!3.58e-09!1;DOID:3978!3.58e-09!1;DOID:3394!3.58e-09!1;DOID:5844!3.58e-09!1;DOID:3151!5.75e-09!1;DOID:3149!5.75e-09!1 | |ontology_enrichment_disease=DOID:178!3.58e-09!1;DOID:326!3.58e-09!1;DOID:3978!3.58e-09!1;DOID:3394!3.58e-09!1;DOID:5844!3.58e-09!1;DOID:3151!5.75e-09!1;DOID:3149!5.75e-09!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007029!3.31e-09!1;UBERON:0000014!1.12e-08!4 | |ontology_enrichment_uberon=UBERON:0007029!3.31e-09!1;UBERON:0000014!1.12e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0007029;9.43e-21;1!UBERON:0004177;7.51e-17;5!UBERON:0005057;7.51e-17;5!UBERON:0006955;2.47e-11;2!UBERON:0004801;2.47e-11;2!UBERON:0002370;2.73e-11;2!UBERON:0005058;2.73e-11;2!UBERON:0009113;2.73e-11;2!UBERON:0000922;7.98e-10;49!UBERON:0002114;5.18e-08;2!UBERON:0002106;6.34e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0007029;9.43e-21;1!UBERON:0004177;7.51e-17;5!UBERON:0005057;7.51e-17;5!UBERON:0006955;2.47e-11;2!UBERON:0004801;2.47e-11;2!UBERON:0002370;2.73e-11;2!UBERON:0005058;2.73e-11;2!UBERON:0009113;2.73e-11;2!UBERON:0000922;7.98e-10;49!UBERON:0002114;5.18e-08;2!UBERON:0002106;6.34e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,9.43e-21,1;UBERON:0004177,2.51e-12,7;UBERON:0005057,2.51e-12,7;UBERON:0006955,2.47e-11,2;UBERON:0004801,2.47e-11,2;UBERON:0002114,5.18e-08,2;UBERON:0002106,6.34e-08,3;UBERON:0004854,6.34e-08,3;UBERON:0009034,6.34e-08,3;UBERON:0002095,6.34e-08,3;UBERON:0004782,6.34e-08,3;UBERON:0003281,6.34e-08,3;UBERON:0009664,6.34e-08,3;UBERON:0002296,6.34e-08,3;UBERON:0005602,6.34e-08,3;UBERON:0001179,6.34e-08,3;UBERON:0006293,6.34e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0,50.1346168230009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5657.52588243552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4778.95817869036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,1.45713297917742,0,3.18321240258189,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0.4226557275834,0,0,5.0921731499126,0,0,0,0,0,0,0,0,0,0,4582.4304925444,0,0,0,0,0,0,0,0,0,0,0,2.41167717140561,0,0,0.213233981900981,0,0,8.62838528712425,0,0,0,0,0,0,0,0.665320713092027,0,0,0,0,4.69281884806909,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0,50.1346168230009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5657.52588243552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4778.95817869036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,1.45713297917742,0,3.18321240258189,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0.4226557275834,0,0,5.0921731499126,0,0,0,0,0,0,0,0,0,0,4582.4304925444,0,0,0,0,0,0,0,0,0,0,0,2.41167717140561,0,0,0.213233981900981,0,0,8.62838528712425,0,0,0,0,0,0,0,0.665320713092027,0,0,0,0,4.69281884806909,0,0,0,0,0 | ||
|short_description=p16@IGF2,p1@INS-IGF2,p1@INS | |short_description=p16@IGF2,p1@INS-IGF2,p1@INS | ||
}} | }} |
Latest revision as of 09:06, 17 September 2015
Short description: | p16@IGF2, p1@INS-IGF2, p1@INS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_IGF2_5end, CAGE_peak_1_at_INS-IGF2_5end, CAGE_peak_1_at_INS_5end |
Coexpression cluster: | C643_duodenum_temporal_pancreas_stomach_mesothelioma_small_amygdala |
Association with transcript: | 0bp_to_ENST00000356578, ENST00000381319, ENST00000397270, NM_000207, NM_001042376, NM_001185097, NM_001185098, NR_003512, uc001lvi.2, uc001lvm.2, uc001lvo.1_5end |
EntrezGene: | 723961,3481,3630 |
HGNC: | 5466, 6081&submit=Submit 33527, 5466, 6081 |
UniProt: | F8WCM5P01308Q1WM24 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 2.47e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
surface | 9.43e-21 | 1 |
hemopoietic organ | 2.51e-12 | 7 |
immune organ | 2.51e-12 | 7 |
uterine epithelium | 2.47e-11 | 2 |
cervix epithelium | 2.47e-11 | 2 |
duodenum | 5.18e-08 | 2 |
spleen | 6.34e-08 | 3 |
gastrointestinal system mesentery | 6.34e-08 | 3 |
stomach region | 6.34e-08 | 3 |
mesentery | 6.34e-08 | 3 |
gastrointestinal system serosa | 6.34e-08 | 3 |
mesentery of stomach | 6.34e-08 | 3 |
gut mesentery | 6.34e-08 | 3 |
dorsal mesentery | 6.34e-08 | 3 |
dorsal mesogastrium | 6.34e-08 | 3 |
peritoneal cavity | 6.34e-08 | 3 |
spleen primordium | 6.34e-08 | 3 |