FFCP PHASE1:Hg19::chr1:27320176..27320200,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388610 | |EntrezGene=388610 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34348 | |HGNC=34348 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NT89 | |UniProt=Q6NT89 | ||
|association_with_transcript=0bp_to_ENST00000522111,NM_001013642,uc001bnj.3_5end | |association_with_transcript=0bp_to_ENST00000522111,NM_001013642,uc001bnj.3_5end | ||
|cluster_id=chr1:27320176..27320200,+ | |||
|coexpression_cluster_id=C3963 | |||
|description=CAGE_peak_1_at_TRNP1_5end | |description=CAGE_peak_1_at_TRNP1_5end | ||
|id=chr1:27320176..27320200,+ | |id=chr1:27320176..27320200,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.30e-23!180;CL:0000057!1.29e-18!75;CL:0002321!3.77e-15!248;CL:0000220!4.98e-15!246;CL:0000222!6.60e-13!119;CL:0000183!2.04e-10!59;CL:0000066!3.19e-10!254;CL:0002620!7.53e-10!23;CL:1000449!2.33e-09!16;CL:1000497!3.07e-09!18;CL:0002518!3.07e-09!18;CL:0000680!4.28e-09!57;CL:0000056!4.28e-09!57;CL:0000355!4.28e-09!57;CL:0000187!1.25e-08!54;CL:0000393!2.45e-08!60;CL:0000211!2.45e-08!60;CL:0002681!3.41e-08!13;CL:0002584!3.41e-08!13;CL:1000507!2.03e-07!12;CL:1000494!2.03e-07!12 | |ontology_enrichment_celltype=CL:0000055!3.30e-23!180;CL:0000057!1.29e-18!75;CL:0002321!3.77e-15!248;CL:0000220!4.98e-15!246;CL:0000222!6.60e-13!119;CL:0000183!2.04e-10!59;CL:0000066!3.19e-10!254;CL:0002620!7.53e-10!23;CL:1000449!2.33e-09!16;CL:1000497!3.07e-09!18;CL:0002518!3.07e-09!18;CL:0000680!4.28e-09!57;CL:0000056!4.28e-09!57;CL:0000355!4.28e-09!57;CL:0000187!1.25e-08!54;CL:0000393!2.45e-08!60;CL:0000211!2.45e-08!60;CL:0002681!3.41e-08!13;CL:0002584!3.41e-08!13;CL:1000507!2.03e-07!12;CL:1000494!2.03e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002620;8.97e-10;23!CL:1000449;5.88e-09;15!CL:1000497;7.62e-09;17!CL:0002518;7.62e-09;17!CL:0000057;1.92e-08;73!CL:0002681;8.84e-08;12!CL:0002584;8.84e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.30e-18,76;CL:0002321,1.32e-15,250;CL:0000222,9.84e-14,121;CL:0002620,8.77e-10,23;CL:0000680,1.46e-09,58;CL:0000056,1.46e-09,58;CL:0000355,1.46e-09,58;CL:0000066,2.02e-09,253;CL:0000187,4.33e-09,55;CL:1000449,5.67e-09,15;CL:1000497,7.48e-09,17;CL:0002518,7.48e-09,17;CL:0000393,8.88e-09,61;CL:0000211,8.88e-09,61;CL:0002681,8.51e-08,12;CL:0002584,8.51e-08,12;CL:0000192,4.04e-07,43;CL:0000514,4.04e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.45e-31!365;UBERON:0000119!3.70e-26!312;UBERON:0000483!2.57e-25!309;UBERON:0000468!3.75e-23!659;UBERON:0000481!5.53e-21!347;UBERON:0000467!7.27e-20!625;UBERON:0005256!1.18e-19!143;UBERON:0000480!1.31e-19!626;UBERON:0002100!1.88e-16!216;UBERON:0003102!3.61e-15!95;UBERON:0000922!2.49e-14!612;UBERON:0002050!7.05e-14!605;UBERON:0005423!7.05e-14!605;UBERON:0000923!8.25e-14!604;UBERON:0005291!8.25e-14!604;UBERON:0006598!8.25e-14!604;UBERON:0002532!8.25e-14!604;UBERON:0004111!4.93e-13!241;UBERON:0000064!1.01e-12!219;UBERON:0003104!1.10e-12!238;UBERON:0009142!1.10e-12!238;UBERON:0002199!1.48e-12!45;UBERON:0002416!1.48e-12!45;UBERON:0000062!2.12e-12!511;UBERON:0000477!3.85e-12!286;UBERON:0000914!6.08e-12!83;UBERON:0002329!6.08e-12!83;UBERON:0003077!6.08e-12!83;UBERON:0003059!6.08e-12!83;UBERON:0007282!6.08e-12!83;UBERON:0009618!6.08e-12!83;UBERON:0007285!6.08e-12!83;UBERON:0004290!1.09e-10!70;UBERON:0000025!1.19e-10!194;UBERON:0003914!1.39e-10!118;UBERON:0002097!2.05e-10!40;UBERON:0000486!4.01e-10!82;UBERON:0000490!1.76e-09!138;UBERON:0004211!2.33e-09!16;UBERON:0001285!2.33e-09!16;UBERON:0007684!2.33e-09!16;UBERON:0003220!2.33e-09!16;UBERON:0004208!2.33e-09!16;UBERON:0003064!8.02e-09!37;UBERON:0006555!2.37e-08!17;UBERON:0005103!2.37e-08!17;UBERON:0000083!2.37e-08!17;UBERON:0009201!2.37e-08!17;UBERON:0004819!2.37e-08!17;UBERON:0006553!2.37e-08!17;UBERON:0003074!2.37e-08!17;UBERON:0003060!2.37e-08!17;UBERON:0001225!3.41e-08!13;UBERON:0008987!3.41e-08!13;UBERON:0001851!1.45e-07!16;UBERON:0000080!1.52e-07!18;UBERON:0002120!1.52e-07!18;UBERON:0004875!1.52e-07!18;UBERON:0005721!1.52e-07!18;UBERON:0005754!1.52e-07!18;UBERON:0007297!1.52e-07!18;UBERON:0001134!1.78e-07!61;UBERON:0002036!1.78e-07!61;UBERON:0003082!1.78e-07!61;UBERON:0004876!1.85e-07!20;UBERON:0009773!2.03e-07!12;UBERON:0001231!2.03e-07!12;UBERON:0004810!2.03e-07!12;UBERON:0001008!2.64e-07!45;UBERON:0000353!3.02e-07!17;UBERON:0006554!3.23e-07!44;UBERON:0002385!3.71e-07!63;UBERON:0001015!3.71e-07!63;UBERON:0000383!3.71e-07!63;UBERON:0002049!5.87e-07!79;UBERON:0007798!5.87e-07!79;UBERON:0009569!5.96e-07!113;UBERON:0005085!8.74e-07!29;UBERON:0004121!9.84e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0003102;2.00e-09;50!UBERON:0002199;5.73e-09;46!UBERON:0002416;5.73e-09;46!UBERON:0006555;5.88e-09;15!UBERON:0004819;5.88e-09;15!UBERON:0001285;5.88e-09;15!UBERON:0007684;5.88e-09;15!UBERON:0002097;2.12e-08;41!UBERON:0001225;8.84e-08;12!UBERON:0008987;8.84e-08;12!UBERON:0000353;2.03e-07;15!UBERON:0001851;4.06e-07;15 | |||
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| ||
|short_description=p1@TRNP1 | |short_description=p1@TRNP1 | ||
}} | }} |
Latest revision as of 07:07, 17 September 2015
Short description: | p1@TRNP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRNP1_5end |
Coexpression cluster: | C3963_Mesenchymal_Smooth_Fibroblast_Alveolar_Keratocytes_Hair_Renal |
Association with transcript: | 0bp_to_ENST00000522111, NM_001013642, uc001bnj.3_5end |
EntrezGene: | TRNP1 |
HGNC: | 34348 |
UniProt: | Q6NT89 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.30e-18 | 76 |
embryonic cell | 1.32e-15 | 250 |
mesodermal cell | 9.84e-14 | 121 |
skin fibroblast | 8.77e-10 | 23 |
muscle precursor cell | 1.46e-09 | 58 |
myoblast | 1.46e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.46e-09 | 58 |
epithelial cell | 2.02e-09 | 253 |
muscle cell | 4.33e-09 | 55 |
epithelial cell of nephron | 5.67e-09 | 15 |
kidney cell | 7.48e-09 | 17 |
kidney epithelial cell | 7.48e-09 | 17 |
electrically responsive cell | 8.88e-09 | 61 |
electrically active cell | 8.88e-09 | 61 |
kidney cortical cell | 8.51e-08 | 12 |
renal cortical epithelial cell | 8.51e-08 | 12 |
smooth muscle cell | 4.04e-07 | 43 |
smooth muscle myoblast | 4.04e-07 | 43 |