FFCP PHASE1:Hg19::chr11:2017862..2017869,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=4713 | |HGNC=4713 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-61bp_to_ENST00000436715_5end | |association_with_transcript=-61bp_to_ENST00000436715_5end | ||
|cluster_id=chr11:2017862..2017869,- | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_28_at_H19_5end | |description=CAGE_peak_28_at_H19_5end | ||
|id=chr11:2017862..2017869,- | |id=chr11:2017862..2017869,- | ||
|ontology_enrichment_celltype=CL:0000188!7.79e-07!9 | |ontology_enrichment_celltype=CL:0000188!7.79e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.95e-19;19!CL:0002577;2.72e-09;3!CL:0002541;3.20e-09;3!CL:0000669;7.82e-07;4!CL:0002536;8.32e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.12e-19,19;CL:0002577,2.73e-09,3;CL:0002541,3.77e-09,3;CL:0000669,7.99e-07,4;CL:0002536,8.10e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.73e-07;29 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!6.98e-14!14;UBERON:0000158!6.98e-14!14;UBERON:0001737!1.01e-12!9;UBERON:0000478!4.57e-12!24;UBERON:0001557!8.11e-12!19;UBERON:0004923!1.72e-11!57;UBERON:0003104!6.86e-11!238;UBERON:0009142!6.86e-11!238;UBERON:0003124!2.62e-10!7;UBERON:0000481!5.91e-09!347;UBERON:0004119!7.20e-09!169;UBERON:0000925!7.20e-09!169;UBERON:0006595!7.20e-09!169;UBERON:0004457!8.07e-09!12;UBERON:0000042!8.07e-09!12;UBERON:0000077!9.14e-09!130;UBERON:0000064!4.78e-08!219;UBERON:0004921!8.86e-08!129;UBERON:0004185!8.86e-08!129;UBERON:0001041!1.37e-07!98;UBERON:0002100!1.45e-07!216;UBERON:0000926!1.85e-07!448;UBERON:0004120!1.85e-07!448;UBERON:0006603!1.85e-07!448;UBERON:0009569!3.66e-07!113;UBERON:0001007!5.26e-07!155;UBERON:0001555!5.26e-07!155;UBERON:0007026!5.26e-07!155;UBERON:0000072!8.25e-07!46 | |ontology_enrichment_uberon=UBERON:0005631!6.98e-14!14;UBERON:0000158!6.98e-14!14;UBERON:0001737!1.01e-12!9;UBERON:0000478!4.57e-12!24;UBERON:0001557!8.11e-12!19;UBERON:0004923!1.72e-11!57;UBERON:0003104!6.86e-11!238;UBERON:0009142!6.86e-11!238;UBERON:0003124!2.62e-10!7;UBERON:0000481!5.91e-09!347;UBERON:0004119!7.20e-09!169;UBERON:0000925!7.20e-09!169;UBERON:0006595!7.20e-09!169;UBERON:0004457!8.07e-09!12;UBERON:0000042!8.07e-09!12;UBERON:0000077!9.14e-09!130;UBERON:0000064!4.78e-08!219;UBERON:0004921!8.86e-08!129;UBERON:0004185!8.86e-08!129;UBERON:0001041!1.37e-07!98;UBERON:0002100!1.45e-07!216;UBERON:0000926!1.85e-07!448;UBERON:0004120!1.85e-07!448;UBERON:0006603!1.85e-07!448;UBERON:0009569!3.66e-07!113;UBERON:0001007!5.26e-07!155;UBERON:0001555!5.26e-07!155;UBERON:0007026!5.26e-07!155;UBERON:0000072!8.25e-07!46 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.18e-24;9!UBERON:0001557;8.18e-24;9!UBERON:0000478;5.54e-20;24!UBERON:0005631;1.44e-17;10!UBERON:0000158;1.44e-17;10!UBERON:0001987;1.76e-11;4!UBERON:0000305;1.77e-10;7!UBERON:0003124;3.20e-09;3!UBERON:0000920;3.20e-09;3!UBERON:0001134;9.63e-09;16!UBERON:0002036;9.63e-09;16!UBERON:0001723;1.06e-08;3!UBERON:0001033;1.06e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.06e-27,14;UBERON:0000158,4.06e-27,14;UBERON:0001737,8.45e-24,9;UBERON:0001557,1.27e-21,19;UBERON:0000478,5.87e-20,24;UBERON:0003124,5.59e-19,7;UBERON:0001987,1.54e-11,4;UBERON:0004340,1.54e-11,4;UBERON:0000305,1.72e-10,7;UBERON:0000920,3.77e-09,3;UBERON:0004871,4.12e-09,8;UBERON:0001041,5.54e-09,87;UBERON:0001723,9.33e-09,3;UBERON:0001033,9.33e-09,3;UBERON:0010056,9.33e-09,3;UBERON:0000072,4.92e-08,47;UBERON:0004923,1.04e-07,66 | |||
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| ||
|short_description=p28@H19 | |short_description=p28@H19 | ||
}} | }} |
Latest revision as of 06:35, 17 September 2015
Short description: | p28@H19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_H19_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | -61bp_to_ENST00000436715_5end |
EntrezGene: | NA |
HGNC: | 4713 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.12e-19 | 19 |
placental epithelial cell | 2.73e-09 | 3 |
chorionic membrane mesenchymal stem cell | 3.77e-09 | 3 |
pericyte cell | 7.99e-07 | 4 |
amniotic epithelial cell | 8.10e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.06e-27 | 14 |
membranous layer | 4.06e-27 | 14 |
larynx | 8.45e-24 | 9 |
upper respiratory tract | 1.27e-21 | 19 |
extraembryonic structure | 5.87e-20 | 24 |
chorion | 5.59e-19 | 7 |
placenta | 1.54e-11 | 4 |
allantois | 1.54e-11 | 4 |
amnion | 1.72e-10 | 7 |
egg chorion | 3.77e-09 | 3 |
somatic layer of lateral plate mesoderm | 4.12e-09 | 8 |
foregut | 5.54e-09 | 87 |
tongue | 9.33e-09 | 3 |
gustatory system | 9.33e-09 | 3 |
future tongue | 9.33e-09 | 3 |
segment of respiratory tract | 4.92e-08 | 47 |
organ component layer | 1.04e-07 | 66 |