FFCP PHASE1:Hg19::chr1:26856236..26856292,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:26856236..26856292,+ to FFCP PHASE1:Hg19::chr1:26856236..26856292,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6195 | |EntrezGene=6195 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10430 | |HGNC=10430 | ||
|TSSclassifier=strong | |||
|UniProt=E9PGT3,Q15418,E9PPC1,E9PPN6 | |UniProt=E9PGT3,Q15418,E9PPC1,E9PPN6 | ||
|association_with_transcript=0bp_to_ENST00000374166,ENST00000374168,ENST00000524436,ENST00000525525,ENST00000526040,NM_002953,uc001bmr.1_5end | |||
|cluster_id=chr1:26856236..26856292,+ | |||
|coexpression_cluster_id=C1455 | |||
|description=CAGE_peak_2_at_RPS6KA1_5end | |||
|id=chr1:26856236..26856292,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.88e-38!254;CL:0002076!2.08e-13!43;CL:0000223!1.12e-12!59;CL:0002368!3.36e-07!13;CL:0000076!4.55e-07!62;CL:0002159!9.11e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.27e-11;42!CL:1000497;1.34e-07;17!CL:0002518;1.34e-07;17!CL:0002368;2.67e-07;13!CL:1000507;6.90e-07;10!CL:1000494;6.90e-07;10!CL:1000449;9.85e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.66e-39,253;CL:0002076,1.15e-14,42;CL:0000223,1.44e-13,58;CL:1000497,1.48e-07,17;CL:0002518,1.48e-07,17;CL:0002368,3.23e-07,13;CL:1000507,7.41e-07,10;CL:1000494,7.41e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;8.16e-08;58 | |||
|ontology_enrichment_disease=DOID:305!2.14e-17!106;DOID:162!4.01e-16!235;DOID:14566!3.17e-15!239;DOID:0050687!1.54e-10!143;DOID:0050686!9.10e-09!137;DOID:1240!1.08e-07!39;DOID:8692!2.07e-07!31;DOID:2531!4.00e-07!51;DOID:0060083!4.00e-07!51;DOID:299!6.87e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.55e-07;31!DOID:299;7.94e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.38e-17,106;DOID:162,5.16e-16,235;DOID:14566,4.86e-15,239;DOID:0050687,1.83e-10,143;DOID:0050686,9.62e-09,137;DOID:1240,1.04e-07,39;DOID:8692,1.99e-07,31;DOID:2531,4.33e-07,51;DOID:0060083,4.33e-07,51;DOID:299,6.61e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.41e-11!169;UBERON:0000925!1.41e-11!169;UBERON:0006595!1.41e-11!169;UBERON:0004921!6.65e-09!129;UBERON:0004185!6.65e-09!129;UBERON:0001004!8.61e-09!72;UBERON:0001007!3.64e-08!155;UBERON:0001555!3.64e-08!155;UBERON:0007026!3.64e-08!155;UBERON:0001041!4.25e-08!98;UBERON:0008947!6.00e-08!38;UBERON:0003258!6.00e-08!38;UBERON:0005177!7.30e-08!107;UBERON:0000065!1.46e-07!53;UBERON:0000077!2.17e-07!130;UBERON:0006554!2.31e-07!44;UBERON:0002113!2.73e-07!27;UBERON:0003918!2.73e-07!27;UBERON:0005095!2.73e-07!27;UBERON:0007687!2.73e-07!27;UBERON:0001008!8.89e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.43e-10;30!UBERON:0001008;1.43e-10;30!UBERON:0002113;1.13e-08;24!UBERON:0011143;1.13e-08;24!UBERON:0004211;6.90e-07;10!UBERON:0009773;6.90e-07;10!UBERON:0001231;6.90e-07;10!UBERON:0004810;6.90e-07;10!UBERON:0006555;9.85e-07;15!UBERON:0004819;9.85e-07;15!UBERON:0001285;9.85e-07;15!UBERON:0007684;9.85e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.38e-11,160;UBERON:0000925,3.38e-11,160;UBERON:0006595,3.38e-11,160;UBERON:0005177,8.14e-10,101;UBERON:0004921,2.22e-09,118;UBERON:0001041,8.33e-09,87;UBERON:0006554,1.11e-08,47;UBERON:0002113,3.12e-08,26;UBERON:0003918,3.12e-08,26;UBERON:0011143,3.12e-08,26;UBERON:0005095,3.12e-08,26;UBERON:0007687,3.12e-08,26;UBERON:0001007,3.78e-08,145;UBERON:0001555,3.78e-08,145;UBERON:0007026,3.78e-08,145;UBERON:0001008,5.22e-08,48;UBERON:0008947,5.74e-08,38;UBERON:0003258,5.74e-08,38;UBERON:0001004,6.99e-08,74;UBERON:0000065,4.57e-07,54;UBERON:0004810,7.41e-07,10 | |||
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| ||
|short_description=p2@RPS6KA1 | |||
}} | }} |
Latest revision as of 06:01, 17 September 2015
Short description: | p2@RPS6KA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RPS6KA1_5end |
Coexpression cluster: | C1455_Tracheal_Corneal_Keratinocyte_Mammary_Urothelial_Bronchial_Esophageal |
Association with transcript: | 0bp_to_ENST00000374166, ENST00000374168, ENST00000524436, ENST00000525525, ENST00000526040, NM_002953, uc001bmr.1_5end |
EntrezGene: | RPS6KA1 |
HGNC: | 10430 |
UniProt: | E9PGT3Q15418E9PPC1E9PPN6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.66e-39 | 253 |
endo-epithelial cell | 1.15e-14 | 42 |
endodermal cell | 1.44e-13 | 58 |
kidney cell | 1.48e-07 | 17 |
kidney epithelial cell | 1.48e-07 | 17 |
respiratory epithelial cell | 3.23e-07 | 13 |
kidney tubule cell | 7.41e-07 | 10 |
nephron tubule epithelial cell | 7.41e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.38e-11 | 160 |
endoderm | 3.38e-11 | 160 |
presumptive endoderm | 3.38e-11 | 160 |
trunk region element | 8.14e-10 | 101 |
subdivision of digestive tract | 2.22e-09 | 118 |
foregut | 8.33e-09 | 87 |
urinary system structure | 1.11e-08 | 47 |
kidney | 3.12e-08 | 26 |
kidney mesenchyme | 3.12e-08 | 26 |
upper urinary tract | 3.12e-08 | 26 |
kidney rudiment | 3.12e-08 | 26 |
kidney field | 3.12e-08 | 26 |
digestive system | 3.78e-08 | 145 |
digestive tract | 3.78e-08 | 145 |
primitive gut | 3.78e-08 | 145 |
renal system | 5.22e-08 | 48 |
respiratory primordium | 5.74e-08 | 38 |
endoderm of foregut | 5.74e-08 | 38 |
respiratory system | 6.99e-08 | 74 |
respiratory tract | 4.57e-07 | 54 |
nephron tubule epithelium | 7.41e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.38e-17 | 106 |
cancer | 5.16e-16 | 235 |
disease of cellular proliferation | 4.86e-15 | 239 |
cell type cancer | 1.83e-10 | 143 |
organ system cancer | 9.62e-09 | 137 |
leukemia | 1.04e-07 | 39 |
myeloid leukemia | 1.99e-07 | 31 |
hematologic cancer | 4.33e-07 | 51 |
immune system cancer | 4.33e-07 | 51 |
adenocarcinoma | 6.61e-07 | 25 |