FFCP PHASE1:Hg19::chr7:150811705..150811763,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=116988 | |EntrezGene=116988 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16923 | |HGNC=16923 | ||
|TSSclassifier=strong | |||
|UniProt=E7ESL9,Q86ST5 | |UniProt=E7ESL9,Q86ST5 | ||
|association_with_transcript=-1bp_to_ENST00000335367,uc003wjh.1_5end | |association_with_transcript=-1bp_to_ENST00000335367,uc003wjh.1_5end | ||
|cluster_id=chr7:150811705..150811763,+ | |||
|coexpression_cluster_id=C226 | |coexpression_cluster_id=C226 | ||
|description=CAGE_peak_4_at_AGAP3_5end | |description=CAGE_peak_4_at_AGAP3_5end | ||
|id=chr7:150811705..150811763,+ | |id=chr7:150811705..150811763,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.52e-30!254;CL:0002076!5.07e-18!43;CL:0000223!9.22e-12!59;CL:0002251!6.60e-11!21;CL:0000076!1.20e-10!62;CL:0002321!1.94e-10!248;CL:0002368!2.18e-10!13;CL:0000220!4.92e-10!246;CL:0000077!5.34e-10!19;CL:1000449!6.55e-08!16;CL:1000507!4.26e-07!12;CL:1000494!4.26e-07!12;CL:0002159!5.87e-07!13;CL:0002202!6.73e-07!9;CL:0002632!6.73e-07!9 | |ontology_enrichment_celltype=CL:0000066!7.52e-30!254;CL:0002076!5.07e-18!43;CL:0000223!9.22e-12!59;CL:0002251!6.60e-11!21;CL:0000076!1.20e-10!62;CL:0002321!1.94e-10!248;CL:0002368!2.18e-10!13;CL:0000220!4.92e-10!246;CL:0000077!5.34e-10!19;CL:1000449!6.55e-08!16;CL:1000507!4.26e-07!12;CL:1000494!4.26e-07!12;CL:0002159!5.87e-07!13;CL:0002202!6.73e-07!9;CL:0002632!6.73e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.33e-16;42!CL:0000077;5.06e-14;19!CL:0002368;1.00e-13;13!CL:1000449;9.73e-12;15!CL:1000507;2.22e-11;10!CL:1000494;2.22e-11;10!CL:0002251;2.72e-11;20!CL:1000497;6.05e-10;17!CL:0002518;6.05e-10;17!CL:0002159;7.19e-10;14!CL:0002681;7.49e-09;12!CL:0002584;7.49e-09;12!CL:0002202;1.87e-08;9!CL:0002632;1.87e-08;9!CL:0000622;1.85e-07;5!CL:0000076;2.13e-07;63!CL:0000244;4.08e-07;4!CL:0000731;4.08e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.34e-35,253;CL:0002076,9.89e-23,42;CL:0000223,5.19e-16,58;CL:0000076,1.19e-15,63;CL:0000077,5.99e-14,19;CL:0002368,9.55e-14,13;CL:1000449,9.38e-12,15;CL:1000507,1.53e-11,10;CL:1000494,1.53e-11,10;CL:0002251,2.50e-11,20;CL:1000497,5.86e-10,17;CL:0002518,5.86e-10,17;CL:0002159,7.35e-10,14;CL:0002321,7.19e-09,250;CL:0002681,7.73e-09,12;CL:0002584,7.73e-09,12;CL:0002202,1.80e-08,9;CL:0002632,1.80e-08,9;CL:0000622,1.86e-07,5;CL:0000244,4.19e-07,4;CL:0000731,4.19e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;2.52e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!9.25e-09!14 | |ontology_enrichment_disease=DOID:1749!9.25e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.90e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.09e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.51e-16!169;UBERON:0000925!9.51e-16!169;UBERON:0006595!9.51e-16!169;UBERON:0000464!1.20e-11!104;UBERON:0001007!1.59e-10!155;UBERON:0001555!1.59e-10!155;UBERON:0007026!1.59e-10!155;UBERON:0001008!5.44e-10!45;UBERON:0000161!1.17e-09!35;UBERON:0000466!1.27e-09!126;UBERON:0006554!1.37e-09!44;UBERON:0001004!2.73e-09!72;UBERON:0003064!3.28e-09!37;UBERON:0005911!3.87e-08!82;UBERON:0004921!4.37e-08!129;UBERON:0004185!4.37e-08!129;UBERON:0006555!4.41e-08!17;UBERON:0005103!4.41e-08!17;UBERON:0000083!4.41e-08!17;UBERON:0009201!4.41e-08!17;UBERON:0004819!4.41e-08!17;UBERON:0006553!4.41e-08!17;UBERON:0003074!4.41e-08!17;UBERON:0003060!4.41e-08!17;UBERON:0000077!4.82e-08!130;UBERON:0004211!6.55e-08!16;UBERON:0001285!6.55e-08!16;UBERON:0007684!6.55e-08!16;UBERON:0003220!6.55e-08!16;UBERON:0004208!6.55e-08!16;UBERON:0000481!8.87e-08!347;UBERON:0000166!1.01e-07!21;UBERON:0000058!1.51e-07!26;UBERON:0000080!2.38e-07!18;UBERON:0002120!2.38e-07!18;UBERON:0004875!2.38e-07!18;UBERON:0005721!2.38e-07!18;UBERON:0005754!2.38e-07!18;UBERON:0007297!2.38e-07!18;UBERON:0009773!4.26e-07!12;UBERON:0001231!4.26e-07!12;UBERON:0004810!4.26e-07!12;UBERON:0004876!6.14e-07!20 | |ontology_enrichment_uberon=UBERON:0004119!9.51e-16!169;UBERON:0000925!9.51e-16!169;UBERON:0006595!9.51e-16!169;UBERON:0000464!1.20e-11!104;UBERON:0001007!1.59e-10!155;UBERON:0001555!1.59e-10!155;UBERON:0007026!1.59e-10!155;UBERON:0001008!5.44e-10!45;UBERON:0000161!1.17e-09!35;UBERON:0000466!1.27e-09!126;UBERON:0006554!1.37e-09!44;UBERON:0001004!2.73e-09!72;UBERON:0003064!3.28e-09!37;UBERON:0005911!3.87e-08!82;UBERON:0004921!4.37e-08!129;UBERON:0004185!4.37e-08!129;UBERON:0006555!4.41e-08!17;UBERON:0005103!4.41e-08!17;UBERON:0000083!4.41e-08!17;UBERON:0009201!4.41e-08!17;UBERON:0004819!4.41e-08!17;UBERON:0006553!4.41e-08!17;UBERON:0003074!4.41e-08!17;UBERON:0003060!4.41e-08!17;UBERON:0000077!4.82e-08!130;UBERON:0004211!6.55e-08!16;UBERON:0001285!6.55e-08!16;UBERON:0007684!6.55e-08!16;UBERON:0003220!6.55e-08!16;UBERON:0004208!6.55e-08!16;UBERON:0000481!8.87e-08!347;UBERON:0000166!1.01e-07!21;UBERON:0000058!1.51e-07!26;UBERON:0000080!2.38e-07!18;UBERON:0002120!2.38e-07!18;UBERON:0004875!2.38e-07!18;UBERON:0005721!2.38e-07!18;UBERON:0005754!2.38e-07!18;UBERON:0007297!2.38e-07!18;UBERON:0009773!4.26e-07!12;UBERON:0001231!4.26e-07!12;UBERON:0004810!4.26e-07!12;UBERON:0004876!6.14e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;9.73e-12;15!UBERON:0004819;9.73e-12;15!UBERON:0001285;9.73e-12;15!UBERON:0007684;9.73e-12;15!UBERON:0004211;2.22e-11;10!UBERON:0009773;2.22e-11;10!UBERON:0001231;2.22e-11;10!UBERON:0004810;2.22e-11;10!UBERON:0006554;3.67e-10;30!UBERON:0001008;3.67e-10;30!UBERON:0000161;1.29e-09;19!UBERON:0000166;1.29e-09;19!UBERON:0000165;7.29e-09;28!UBERON:0001225;7.49e-09;12!UBERON:0008987;7.49e-09;12!UBERON:0000365;2.81e-08;5!UBERON:0001851;3.45e-08;15!UBERON:0000974;6.02e-08;6!UBERON:0000353;6.37e-08;15!UBERON:0000486;1.57e-07;12!UBERON:0001041;3.40e-07;14!UBERON:0005910;9.35e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.77e-15,160;UBERON:0000925,1.77e-15,160;UBERON:0006595,1.77e-15,160;UBERON:0004211,9.38e-12,15;UBERON:0009773,9.38e-12,15;UBERON:0001231,9.38e-12,15;UBERON:0001285,9.38e-12,15;UBERON:0007684,9.38e-12,15;UBERON:0004208,9.38e-12,15;UBERON:0001008,1.20e-11,48;UBERON:0004810,1.53e-11,10;UBERON:0000161,2.92e-11,36;UBERON:0006554,4.39e-11,47;UBERON:0001004,7.29e-11,74;UBERON:0006555,8.47e-11,16;UBERON:0004819,8.47e-11,16;UBERON:0000166,8.84e-11,22;UBERON:0001007,9.14e-10,145;UBERON:0001555,9.14e-10,145;UBERON:0007026,9.14e-10,145;UBERON:0000033,1.84e-09,56;UBERON:0000153,1.93e-09,62;UBERON:0007811,1.93e-09,62;UBERON:0001225,7.73e-09,12;UBERON:0008987,7.73e-09,12;UBERON:0001444,1.94e-08,49;UBERON:0000165,2.08e-08,29;UBERON:0000930,2.08e-08,29;UBERON:0000365,2.93e-08,5;UBERON:0001851,3.49e-08,15;UBERON:0000353,6.49e-08,15;UBERON:0001041,1.76e-07,87;UBERON:0005911,3.29e-07,82;UBERON:0004921,3.35e-07,118;UBERON:0003102,4.54e-07,99;UBERON:0005631,4.68e-07,14;UBERON:0000158,4.68e-07,14;UBERON:0005910,9.67e-07,6 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,6.38908234903923,32.0988537267317,3.49506195408276,2.90143676051299,0,0,0,0,0,0,0.984968464614303,3.06001036866379,0.313454721478088,0.286235987131057,1.64249310087461,1.00434111675842,0,0,0,0,0,0,54.2458522442567,51.2050061923025,39.5636790878463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02290049474824,0,0,0,0,0,0.567208902984407,0.443458794925128,1.49319135678314,0.785874452986276,36.4295288292542,31.1458931938921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.4815933185385,0,0,0,0,0.354668382198357,0,1.06748995729705,1.72667283892012,0,0.269421344139376,0,0.454072282934794,0,0.468642863667593,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0.718618141816238,0.168336113954066,0,0,0,0,0,0.340296549480063,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,30.1486930934743,27.8201043002651,26.3860227757884,0.609868530647977,0.530119073285941,0.813357600086629,1.0366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,6.173610169971,1.47008711385542,0,0,0,0,0.122988438543114,2.57351715447788,31.1690810560497,39.3406136401668,17.9946860616819,12.4994400964015,0,0,2.88662684050547,0,0.352226082707465,0.144366447761074,0,0.380508304469197,0,0,0,0,0,25.3081351764298,18.3100519736757,19.8485136139341,11.5530494286674,17.7286702493517,52.9068097247991,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,0.87192013766656,0.51336800074665,0.646358578788889,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,1.20575750823834,4.35766729300147,7.59794732983634,0,0,0,0.479249710983165,2.29723871668228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.178428988797162,0.473107245101804,0,0.300946099727719,0,2.0694614258501,0,1.10621501125022,0,0,0.343143423810856,0,0,0,2.72814814301633,3.32870879020994,3.0239029332968,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,0,19.8501405600252,16.2062540527178,0.114814448164607,0,0.262248829918848,1.80479845162965,1.38627606787947,6.27479815341484,8.76835347919564,1.47772280450026,1.13733384070897,0.340187410553031,1.0795795805107,0,4.06419656315779,10.0337954770971,3.3133915495855,4.98645605357235,4.92524460388792,0,0,1.53870075069834,2.29610251989794,0.325378394664303,1.854738209659,0,0,17.2279661398852,20.1518676271322,0,0,0.462145851343933,0.614014698904518,0,0.107420244868274,0,0.255679882248303,0.0890320356467374,25.6191618809516,44.7802856960697,28.840473023776,28.7288097629762,0,0,0,0,0,0,0,0,0,0.316379424718726,0.762520775695299,0,0,0,0,0,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0.975267478179181,0,0,0,0,0,0,0,0,0,0,0.608731130888112,1.239293992399,0.563391205064483,0.573645408816206,0.392996164052485,0,0,0,0,0,0,25.7875262104372,59.6569025226851,72.9569598570861,1.12972560932135,29.7048707143149,25.2707213501438,48.7773168890343,21.8237230196611,0,0,0,0,0,0,0,0,0.106824071127473,0,4.41072388765857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,2.99424864653152,0,0,0,0,0.71623345421307,2.37571744666111,1.53580351049616,0,0,0,0,0.63337622438398,0.796991953004279,0,0,0,0,0,2.15684042753584,2.32727527078292,0,0.591860433821602,0,0,0,0,0,0,0,1.44999915086959,13.200040001118,0.762760950878299,0.945550727071745,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0.557694977114413,0.846452843541768,0,0.23056390438806,1.07709173291727,2.39024218228418,2.87101043758728,2.93112298885959,3.19820865611181,0,0,0,0,0,0,0,0,0,0.652931232636591,0.141353071433941,0,0.995261931078505,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,2.41981432097328,0,0,0,0.103688191397247,0,0,0,0,0,0,1.90915712168644,6.17352103710579,0.522355239482415,0.34945333648406,0.51595809741485,0,0,0,8.14707738502723,0,0.677942222341597,0.411125773940253,0,0,0.977756913674015,0.561111741760736,0,1.79828648623917,0.576361668616424,1.94712213482057,0,0.14405479798815,0.124252535565433,3.53541051925193,0.951329442515298,0.418411385249333,0,0,0,0,0,0,0,0,0,0,2.39614800598789,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0.643012593860077,0.962776056180637,0.83088067605837,0,1.5476039091159,0,23.4804281319486,0.0788057072991982,0.681909645754975,2.11200673038813,0,0.191915197319445,0,0,0,0,0.864221491201268,0,0,0,0.340776043570843,0,0,0,0,0,0,0.704815022316672,4.48507132784318,1.72924735609633,3.72815149812476,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0,0,1.49976489554528,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0.318593534327405,0,0.776314784381297,0,0,0.521745061811734,2.25386413495828,3.42724690951916,0,0.181848659202559,3.22231671127465,0,1.19428766609585,0,0,0,0,0.385239660814607,4.71771501024837,5.21988583930423,5.44094221229454,3.70435958918134,4.64999738562288,3.04451029838529,4.01441881309264,4.60496504115285,2.65033718918822,8.48821768392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| ||
|short_description=p4@AGAP3 | |short_description=p4@AGAP3 | ||
}} | }} |
Latest revision as of 05:51, 17 September 2015
Short description: | p4@AGAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_AGAP3_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | -1bp_to_ENST00000335367, uc003wjh.1_5end |
EntrezGene: | AGAP3 |
HGNC: | 16923 |
UniProt: | E7ESL9Q86ST5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.34e-35 | 253 |
endo-epithelial cell | 9.89e-23 | 42 |
endodermal cell | 5.19e-16 | 58 |
squamous epithelial cell | 1.19e-15 | 63 |
mesothelial cell | 5.99e-14 | 19 |
respiratory epithelial cell | 9.55e-14 | 13 |
epithelial cell of nephron | 9.38e-12 | 15 |
kidney tubule cell | 1.53e-11 | 10 |
nephron tubule epithelial cell | 1.53e-11 | 10 |
epithelial cell of alimentary canal | 2.50e-11 | 20 |
kidney cell | 5.86e-10 | 17 |
kidney epithelial cell | 5.86e-10 | 17 |
general ecto-epithelial cell | 7.35e-10 | 14 |
embryonic cell | 7.19e-09 | 250 |
kidney cortical cell | 7.73e-09 | 12 |
renal cortical epithelial cell | 7.73e-09 | 12 |
epithelial cell of tracheobronchial tree | 1.80e-08 | 9 |
epithelial cell of lower respiratory tract | 1.80e-08 | 9 |
acinar cell | 1.86e-07 | 5 |
transitional epithelial cell | 4.19e-07 | 4 |
urothelial cell | 4.19e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.09e-08 | 14 |