FFCP PHASE1:Hg19::chr7:150555034..150555046,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26 | |EntrezGene=26 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=80 | |HGNC=80 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000480582_5end | |association_with_transcript=13bp_to_ENST00000480582_5end | ||
|cluster_id=chr7:150555034..150555046,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_6_at_ABP1_5end | |description=CAGE_peak_6_at_ABP1_5end | ||
|id=chr7:150555034..150555046,+ | |id=chr7:150555034..150555046,+ | ||
|ontology_enrichment_celltype=CL:0002541!3.75e-19!3;CL:0000453!1.65e-11!5;CL:0002178!2.75e-08!3;CL:0000313!3.01e-07!1 | |ontology_enrichment_celltype=CL:0002541!3.75e-19!3;CL:0000453!1.65e-11!5;CL:0002178!2.75e-08!3;CL:0000313!3.01e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002541;3.46e-55;3!CL:0000453;6.31e-33;5!CL:0000990;1.21e-18;8!CL:0000451;2.20e-15;10!CL:0000349;2.58e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.47e-55,3;CL:0000453,6.67e-33,5;CL:0000990,1.25e-18,8;CL:0000451,2.25e-15,10;CL:0000349,2.58e-09,19 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.47e-19;1 | |||
|ontology_enrichment_disease=DOID:2152!3.01e-07!1;DOID:4960!4.85e-07!1;DOID:0070004!4.85e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!3.75e-19!3;UBERON:0000920!3.75e-19!3;UBERON:0005409!3.40e-17!35;UBERON:0000160!2.79e-15!27;UBERON:0003124!2.88e-14!7;UBERON:0001155!1.64e-10!9;UBERON:0000059!1.28e-08!11;UBERON:0004911!3.01e-07!1;UBERON:0005631!3.66e-07!14;UBERON:0000158!3.66e-07!14;UBERON:0001154!5.78e-07!1;UBERON:0001153!5.78e-07!1;UBERON:0001301!7.73e-07!1 | |ontology_enrichment_uberon=UBERON:0000476!3.75e-19!3;UBERON:0000920!3.75e-19!3;UBERON:0005409!3.40e-17!35;UBERON:0000160!2.79e-15!27;UBERON:0003124!2.88e-14!7;UBERON:0001155!1.64e-10!9;UBERON:0000059!1.28e-08!11;UBERON:0004911!3.01e-07!1;UBERON:0005631!3.66e-07!14;UBERON:0000158!3.66e-07!14;UBERON:0001154!5.78e-07!1;UBERON:0001153!5.78e-07!1;UBERON:0001301!7.73e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;3.46e-55;3!UBERON:0000920;3.46e-55;3!UBERON:0002108;1.98e-32;4!UBERON:0005631;4.00e-17;10!UBERON:0000158;4.00e-17;10!UBERON:0000478;1.63e-12;24!UBERON:0000160;1.62e-09;17!UBERON:0005409;1.43e-07;22!UBERON:0002114;3.15e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.47e-55,3;UBERON:0003124,7.97e-42,7;UBERON:0002108,1.98e-32,4;UBERON:0005631,3.56e-21,14;UBERON:0000158,3.56e-21,14;UBERON:0000478,1.61e-12,24;UBERON:0000160,1.62e-09,17;UBERON:0002114,3.35e-07,2;UBERON:0005409,9.25e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.25103363222567,5.22106282390615,31.9820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.530745387020035,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.640358984218058,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709251365692784,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33832370607266,2.92302648689399,2.45348091383766,0,0,0,0,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48366636455389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782988022584546,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,1.15761237161917,1.31135736302374,19.753326447184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.25103363222567,5.22106282390615,31.9820865611181,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.530745387020035,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.640358984218058,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709251365692784,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33832370607266,2.92302648689399,2.45348091383766,0,0,0,0,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48366636455389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782988022584546,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,1.15761237161917,1.31135736302374,19.753326447184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p6@ABP1 | |short_description=p6@ABP1 | ||
}} | }} |
Latest revision as of 04:29, 17 September 2015
Short description: | p6@ABP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ABP1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 13bp_to_ENST00000480582_5end |
EntrezGene: | ABP1 |
HGNC: | 80 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.47e-55 | 3 |
Langerhans cell | 6.67e-33 | 5 |
conventional dendritic cell | 1.25e-18 | 8 |
dendritic cell | 2.25e-15 | 10 |
extraembryonic cell | 2.58e-09 | 19 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.47e-55 | 3 |
chorion | 7.97e-42 | 7 |
small intestine | 1.98e-32 | 4 |
extraembryonic membrane | 3.56e-21 | 14 |
membranous layer | 3.56e-21 | 14 |
extraembryonic structure | 1.61e-12 | 24 |
intestine | 1.62e-09 | 17 |
duodenum | 3.35e-07 | 2 |
gastrointestinal system | 9.25e-07 | 25 |