FFCP PHASE1:Hg19::chr20:55967129..55967141,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55544 | |EntrezGene=55544 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15818 | |HGNC=15818 | ||
|TSSclassifier=strong | |||
|UniProt=A6NG75 | |UniProt=A6NG75 | ||
|association_with_transcript=-144bp_to_ENST00000371219_5end | |association_with_transcript=-144bp_to_ENST00000371219_5end | ||
|cluster_id=chr20:55967129..55967141,+ | |||
|description=CAGE_peak_2_at_RBM38_5end | |description=CAGE_peak_2_at_RBM38_5end | ||
|id=chr20:55967129..55967141,+ | |id=chr20:55967129..55967141,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.55e-28!53;CL:0000051!1.55e-28!53;CL:0000838!6.96e-28!52;CL:0000988!6.90e-16!182;CL:0000037!3.80e-15!172;CL:0000566!3.80e-15!172;CL:0000738!7.02e-15!140;CL:0000084!3.63e-13!25;CL:0000827!3.63e-13!25;CL:0000945!4.26e-13!24;CL:0000826!4.26e-13!24;CL:0002087!1.86e-12!119;CL:0002032!3.97e-12!165;CL:0000837!3.97e-12!165;CL:0000791!1.48e-11!18;CL:0000789!1.48e-11!18;CL:0002420!1.48e-11!18;CL:0002419!1.48e-11!18;CL:0000790!1.48e-11!18;CL:0002031!1.87e-11!124;CL:0000624!3.04e-08!6;CL:0000236!1.08e-07!14 | |ontology_enrichment_celltype=CL:0000542!1.55e-28!53;CL:0000051!1.55e-28!53;CL:0000838!6.96e-28!52;CL:0000988!6.90e-16!182;CL:0000037!3.80e-15!172;CL:0000566!3.80e-15!172;CL:0000738!7.02e-15!140;CL:0000084!3.63e-13!25;CL:0000827!3.63e-13!25;CL:0000945!4.26e-13!24;CL:0000826!4.26e-13!24;CL:0002087!1.86e-12!119;CL:0002032!3.97e-12!165;CL:0000837!3.97e-12!165;CL:0000791!1.48e-11!18;CL:0000789!1.48e-11!18;CL:0002420!1.48e-11!18;CL:0002419!1.48e-11!18;CL:0000790!1.48e-11!18;CL:0002031!1.87e-11!124;CL:0000624!3.04e-08!6;CL:0000236!1.08e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000815;6.45e-12;2!CL:0000792;6.45e-12;2!CL:0002677;6.45e-12;2!CL:0000764;1.79e-11;2!CL:0000558;1.79e-11;2!CL:0000784;1.59e-08;3!CL:0000898;3.18e-08;3!CL:0000084;4.26e-07;25!CL:0000542;5.28e-07;53!CL:0000236;9.90e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,6.49e-12,2;CL:0000792,6.49e-12,2;CL:0002677,6.49e-12,2;CL:0000764,2.61e-11,2;CL:0000765,2.61e-11,2;CL:0000050,2.61e-11,2;CL:0000038,2.61e-11,2;CL:0000558,2.61e-11,2;CL:0000547,2.61e-11,2;CL:0000549,2.61e-11,2;CL:0000550,2.61e-11,2;CL:0000552,2.61e-11,2;CL:0000838,3.47e-10,52;CL:0000542,5.91e-10,53;CL:0000051,5.91e-10,53;CL:0000784,1.72e-08,3;CL:0000898,3.19e-08,3;CL:0000084,5.70e-07,25;CL:0000827,5.70e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;5.28e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.06e-08!15;UBERON:0000179!1.06e-08!15;UBERON:0000463!1.06e-08!15;UBERON:0004177!2.11e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!1.06e-08!15;UBERON:0000179!1.06e-08!15;UBERON:0000463!1.06e-08!15;UBERON:0004177!2.11e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.45e-12;2!UBERON:0005058;6.45e-12;2!UBERON:0009113;6.45e-12;2!UBERON:0000178;1.10e-08;15!UBERON:0000179;1.10e-08;15!UBERON:0000463;1.10e-08;15!UBERON:0001389;5.11e-07;1!UBERON:0000026;5.11e-07;1!UBERON:0008784;5.11e-07;1!UBERON:0006058;5.11e-07;1!UBERON:0003663;5.11e-07;1!UBERON:0004256;5.11e-07;1!UBERON:0004708;5.11e-07;1!UBERON:0002101;5.11e-07;1!UBERON:0004709;5.11e-07;1!UBERON:0002529;5.11e-07;1!UBERON:0010538;5.11e-07;1!UBERON:0003661;5.11e-07;1!UBERON:0010890;5.11e-07;1!UBERON:0002471;5.11e-07;1!UBERON:0001383;5.11e-07;1!UBERON:0010758;5.11e-07;1!UBERON:0010707;5.11e-07;1!UBERON:0000978;5.11e-07;1!UBERON:0002103;5.11e-07;1!UBERON:0001665;5.11e-07;1!UBERON:0003823;5.11e-07;1!UBERON:0000154;5.11e-07;1!UBERON:0010709;5.11e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.18e-08,15;UBERON:0000179,1.18e-08,15;UBERON:0000463,1.18e-08,15;UBERON:0005418,4.85e-07,1;UBERON:0001389,4.85e-07,1;UBERON:0000026,4.85e-07,1;UBERON:0008784,4.85e-07,1;UBERON:0006058,4.85e-07,1;UBERON:0003663,4.85e-07,1;UBERON:0004256,4.85e-07,1;UBERON:0004708,4.85e-07,1;UBERON:0002101,4.85e-07,1;UBERON:0004709,4.85e-07,1;UBERON:0002529,4.85e-07,1;UBERON:0010538,4.85e-07,1;UBERON:0003661,4.85e-07,1;UBERON:0010890,4.85e-07,1;UBERON:0002471,4.85e-07,1;UBERON:0001383,4.85e-07,1;UBERON:0004357,4.85e-07,1;UBERON:0004347,4.85e-07,1;UBERON:0005420,4.85e-07,1;UBERON:0005732,4.85e-07,1;UBERON:0010758,4.85e-07,1;UBERON:0010707,4.85e-07,1;UBERON:0000978,4.85e-07,1;UBERON:0002103,4.85e-07,1;UBERON:0001665,4.85e-07,1;UBERON:0003823,4.85e-07,1;UBERON:0000154,4.85e-07,1;UBERON:0010709,4.85e-07,1;UBERON:0005733,4.85e-07,1;UBERON:0005730,4.85e-07,1 | |||
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| ||
|short_description=p2@RBM38 | |short_description=p2@RBM38 | ||
}} | }} |
Latest revision as of 04:10, 17 September 2015
Short description: | p2@RBM38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RBM38_5end |
Coexpression cluster: | NA |
Association with transcript: | -144bp_to_ENST00000371219_5end |
EntrezGene: | RBM38 |
HGNC: | 15818 |
UniProt: | A6NG75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 6.49e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.49e-12 | 2 |
naive regulatory T cell | 6.49e-12 | 2 |
erythroid lineage cell | 2.61e-11 | 2 |
erythroblast | 2.61e-11 | 2 |
megakaryocyte-erythroid progenitor cell | 2.61e-11 | 2 |
erythroid progenitor cell | 2.61e-11 | 2 |
reticulocyte | 2.61e-11 | 2 |
proerythroblast | 2.61e-11 | 2 |
basophilic erythroblast | 2.61e-11 | 2 |
polychromatophilic erythroblast | 2.61e-11 | 2 |
orthochromatic erythroblast | 2.61e-11 | 2 |
lymphoid lineage restricted progenitor cell | 3.47e-10 | 52 |
lymphocyte | 5.91e-10 | 53 |
common lymphoid progenitor | 5.91e-10 | 53 |
plasmacytoid dendritic cell | 1.72e-08 | 3 |
naive T cell | 3.19e-08 | 3 |
T cell | 5.70e-07 | 25 |
pro-T cell | 5.70e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
blood | 1.18e-08 | 15 |
haemolymphatic fluid | 1.18e-08 | 15 |
organism substance | 1.18e-08 | 15 |
hindlimb bud | 4.85e-07 | 1 |
soleus muscle | 4.85e-07 | 1 |
appendage | 4.85e-07 | 1 |
lower limb segment | 4.85e-07 | 1 |
multi-limb segment region | 4.85e-07 | 1 |
hindlimb muscle | 4.85e-07 | 1 |
hindlimb zeugopod muscle | 4.85e-07 | 1 |
paired limb/fin | 4.85e-07 | 1 |
limb | 4.85e-07 | 1 |
pelvic appendage | 4.85e-07 | 1 |
limb segment | 4.85e-07 | 1 |
paired limb/fin segment | 4.85e-07 | 1 |
limb muscle | 4.85e-07 | 1 |
pelvic complex muscle | 4.85e-07 | 1 |
zeugopod | 4.85e-07 | 1 |
muscle of leg | 4.85e-07 | 1 |
paired limb/fin bud | 4.85e-07 | 1 |
limb bud | 4.85e-07 | 1 |
pelvic appendage bud | 4.85e-07 | 1 |
limb/fin field | 4.85e-07 | 1 |
subdivision of organism along appendicular axis | 4.85e-07 | 1 |
appendage girdle complex | 4.85e-07 | 1 |
leg | 4.85e-07 | 1 |
hindlimb | 4.85e-07 | 1 |
triceps surae | 4.85e-07 | 1 |
hindlimb zeugopod | 4.85e-07 | 1 |
posterior region of body | 4.85e-07 | 1 |
pelvic complex | 4.85e-07 | 1 |
limb field | 4.85e-07 | 1 |
hindlimb/pelvic fin field | 4.85e-07 | 1 |