FFCP PHASE1:Hg19::chr4:174451596..174451632,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=79804 | |EntrezGene=79804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | ||
|HGNC= | |HGNC= | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000502334,ENST00000502896,ENST00000502941,ENST00000503198,ENST00000503309,ENST00000503474,ENST00000504740,ENST00000505032,ENST00000505621,ENST00000507322,ENST00000507571,ENST00000507636,ENST00000508534,ENST00000509640,ENST00000509866,ENST00000510221,ENST00000510339,ENST00000511196,ENST00000511728,ENST00000512209,ENST00000512246,ENST00000512943,ENST00000515345,ENST00000515350,ENST00000515376,ENST00000515741,NR_003679,uc003itj.2,uc003itk.2,uc003itl.3,uc010irf.2,uc010irg.2,uc010irh.2,uc010iri.2,uc010irj.2,uc010irk.2,uc010irl.2,uc010irm.2,uc010irn.2,uc011ckd.1_5end | |association_with_transcript=0bp_to_ENST00000502334,ENST00000502896,ENST00000502941,ENST00000503198,ENST00000503309,ENST00000503474,ENST00000504740,ENST00000505032,ENST00000505621,ENST00000507322,ENST00000507571,ENST00000507636,ENST00000508534,ENST00000509640,ENST00000509866,ENST00000510221,ENST00000510339,ENST00000511196,ENST00000511728,ENST00000512209,ENST00000512246,ENST00000512943,ENST00000515345,ENST00000515350,ENST00000515376,ENST00000515741,NR_003679,uc003itj.2,uc003itk.2,uc003itl.3,uc010irf.2,uc010irg.2,uc010irh.2,uc010iri.2,uc010irj.2,uc010irk.2,uc010irl.2,uc010irm.2,uc010irn.2,uc011ckd.1_5end | ||
|cluster_id=chr4:174451596..174451632,+ | |||
|coexpression_cluster_id=C4394 | |coexpression_cluster_id=C4394 | ||
|description=CAGE_peak_1_at_NBLA00301_5end | |description=CAGE_peak_1_at_NBLA00301_5end | ||
Latest revision as of 19:37, 16 September 2015
| Short description: | p1@NBLA00301 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_NBLA00301_5end |
| Coexpression cluster: | C4394_neuroblastoma_Mesenchymal_rectum_heart_neuroectodermal_leiomyoma_gall |
| Association with transcript: | 0bp_to_ENST00000502334, ENST00000502896, ENST00000502941, ENST00000503198, ENST00000503309, ENST00000503474, ENST00000504740, ENST00000505032, ENST00000505621, ENST00000507322, ENST00000507571, ENST00000507636, ENST00000508534, ENST00000509640, ENST00000509866, ENST00000510221, ENST00000510339, ENST00000511196, ENST00000511728, ENST00000512209, ENST00000512246, ENST00000512943, ENST00000515345, ENST00000515350, ENST00000515376, ENST00000515741, NR_003679, uc003itj.2, uc003itk.2, uc003itl.3, uc010irf.2, uc010irg.2, uc010irh.2, uc010iri.2, uc010irj.2, uc010irk.2, uc010irl.2, uc010irm.2, uc010irn.2, uc011ckd.1_5end |
| EntrezGene: | NBLA00301 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| extraembryonic cell | 3.05e-09 | 19 |
| chorionic membrane mesenchymal stem cell | 3.11e-08 | 3 |
| mesenchymal stem cell of umbilical cord | 3.48e-07 | 6 |
| Ontology term | p-value | n |
|---|---|---|
| primary circulatory organ | 1.49e-12 | 27 |
| extraembryonic structure | 1.40e-10 | 24 |
| intestine | 1.10e-09 | 17 |
| adult organism | 1.89e-08 | 114 |
| blood vessel layer | 2.21e-08 | 7 |
| cardiac chamber | 2.49e-08 | 3 |
| valve | 2.68e-08 | 3 |
| cardiac mesenchyme | 2.68e-08 | 3 |
| cardial valve | 2.68e-08 | 3 |
| tunica intima | 2.68e-08 | 3 |
| heart layer | 2.68e-08 | 3 |
| endocardium | 2.68e-08 | 3 |
| endocardial cushion | 2.68e-08 | 3 |
| presumptive endocardium | 2.68e-08 | 3 |
| egg chorion | 3.11e-08 | 3 |
| heart | 3.31e-08 | 24 |
| primitive heart tube | 3.31e-08 | 24 |
| primary heart field | 3.31e-08 | 24 |
| anterior lateral plate mesoderm | 3.31e-08 | 24 |
| heart tube | 3.31e-08 | 24 |
| heart primordium | 3.31e-08 | 24 |
| cardiac mesoderm | 3.31e-08 | 24 |
| cardiogenic plate | 3.31e-08 | 24 |
| heart rudiment | 3.31e-08 | 24 |
| large intestine | 1.11e-07 | 11 |
| gastrointestinal system | 1.33e-07 | 25 |
| mesenchyme of umbilical cord | 3.48e-07 | 6 |
| Ontology term | p-value | n |
|---|---|---|
| cell type benign neoplasm | 1.12e-08 | 3 |
| leiomyoma | 1.12e-08 | 3 |
