FFCP PHASE1:Hg19::chr17:62084241..62084253,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:62084241..62084253,- to FFCP PHASE1:Hg19::chr17:62084241..62084253,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3384 | |EntrezGene=3384 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5345 | |HGNC=5345 | ||
|TSSclassifier=strong | |||
|UniProt=P13598,Q6FHE2 | |UniProt=P13598,Q6FHE2 | ||
|association_with_transcript=29bp_to_ENST00000449662,NM_000873,uc002jdu.3_5end | |||
|cluster_id=chr17:62084241..62084253,- | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_3_at_ICAM2_5end | |||
|id=chr17:62084241..62084253,- | |||
|ontology_enrichment_celltype=CL:0000115!1.79e-31!35;CL:0002139!2.66e-30!24;CL:0002078!7.72e-24!44;CL:0000071!4.02e-23!18;CL:0002546!4.02e-23!18;CL:0000213!1.45e-17!57;CL:0000215!1.45e-17!57;CL:1000413!1.77e-12!9;CL:0002544!8.30e-09!6;CL:0002543!1.02e-08!6;CL:0005020!1.03e-08!6;CL:0002138!1.03e-08!6;CL:0005022!1.03e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.86e-64;24!CL:0000115;1.07e-54;36!CL:0000071;2.33e-48;18!CL:0002078;5.78e-32;45!CL:1000413;3.31e-25;9!CL:0000213;1.12e-22;58!CL:0000215;1.12e-22;58!CL:0002544;3.02e-17;6!CL:0002138;4.94e-17;6!CL:0002543;5.15e-17;6!CL:0002188;1.45e-09;5!CL:0002144;2.31e-09;3!CL:0002618;5.16e-09;3!CL:0000076;6.29e-07;63!CL:0002545;7.04e-07;2!CL:1000746;8.48e-07;7!CL:1000612;8.48e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,6.80e-65,36;CL:0002139,4.83e-64,24;CL:0002078,4.66e-50,45;CL:0000071,2.30e-48,18;CL:0002546,2.30e-48,18;CL:0000213,8.78e-37,58;CL:0000215,8.78e-37,58;CL:1000413,3.50e-25,9;CL:0002544,3.13e-17,6;CL:0002543,4.85e-17,6;CL:0005020,4.99e-17,6;CL:0002138,4.99e-17,6;CL:0005022,4.99e-17,6;CL:0000222,3.71e-14,121;CL:0000076,3.59e-10,63;CL:0002188,1.51e-09,5;CL:0002144,2.29e-09,3;CL:0002618,4.91e-09,3;CL:0002545,7.06e-07,2;CL:1000746,8.69e-07,7;CL:1000612,8.69e-07,7 | |||
|ontology_enrichment_development_v019=CL:0002546;2.33e-48;18!CL:0005022;4.94e-17;6!UBERON:0004872;4.98e-09;7!CL:0000222;3.59e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1036;1.18e-10;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,8.25e-11,8 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.44e-51!115;UBERON:0001986!4.02e-23!18;UBERON:0004638!4.02e-23!18;UBERON:0004852!4.02e-23!18;UBERON:0000025!3.55e-20!194;UBERON:0004111!6.01e-20!241;UBERON:0000487!1.39e-17!22;UBERON:0000477!2.35e-17!286;UBERON:0001049!1.97e-16!57;UBERON:0005068!1.97e-16!57;UBERON:0006241!1.97e-16!57;UBERON:0007135!1.97e-16!57;UBERON:0006914!4.04e-16!25;UBERON:0002616!1.39e-13!59;UBERON:0000055!3.36e-13!69;UBERON:0003080!6.85e-13!42;UBERON:0001009!9.13e-13!113;UBERON:0003915!1.77e-12!9;UBERON:0004700!1.77e-12!9;UBERON:0001917!1.77e-12!9;UBERON:0002780!3.96e-12!41;UBERON:0001890!3.96e-12!41;UBERON:0006240!3.96e-12!41;UBERON:0002020!1.14e-11!34;UBERON:0003528!1.14e-11!34;UBERON:0001893!2.11e-11!34;UBERON:0003075!3.03e-11!86;UBERON:0007284!3.03e-11!86;UBERON:0004535!3.29e-11!110;UBERON:0002791!8.24e-11!33;UBERON:0000955!1.60e-10!69;UBERON:0006238!1.60e-10!69;UBERON:0004872!1.92e-10!84;UBERON:0001869!3.15e-10!32;UBERON:0002346!3.26e-10!90;UBERON:0002619!4.37e-10!22;UBERON:0002049!4.44e-10!79;UBERON:0007798!4.44e-10!79;UBERON:0001981!7.39e-10!60;UBERON:0007500!7.39e-10!60;UBERON:0004537!7.39e-10!60;UBERON:0006965!7.39e-10!60;UBERON:0001017!1.09e-09!82;UBERON:0005743!2.04e-09!86;UBERON:0000483!6.45e-09!309;UBERON:0001950!1.20e-08!20;UBERON:0000119!1.33e-08!312;UBERON:0000956!2.41e-08!25;UBERON:0000203!2.41e-08!25;UBERON:0003914!2.41e-08!118;UBERON:0002298!4.37e-08!8;UBERON:0000073!4.52e-08!94;UBERON:0001016!4.52e-08!94;UBERON:0002465!8.45e-08!10;UBERON:0003056!3.88e-07!61;UBERON:0001638!4.34e-07!9;UBERON:0003920!4.34e-07!9;UBERON:0004582!4.34e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.33e-48;18!UBERON:0001986;2.33e-48;18!UBERON:0004852;2.33e-48;18!UBERON:0000487;1.41e-38;22!UBERON:0006914;2.66e-33;25!UBERON:0003915;3.31e-25;9!UBERON:0004700;3.31e-25;9!UBERON:0001917;3.31e-25;9!UBERON:0000490;4.39e-22;33!UBERON:0000055;1.12e-15;65!UBERON:0001638;1.56e-14;9!UBERON:0003920;1.56e-14;9!UBERON:0004582;1.56e-14;9!UBERON:0002465;5.70e-13;10!UBERON:0001473;1.47e-12;8!UBERON:0004536;1.47e-12;8!UBERON:0006558;1.47e-12;8!UBERON:0007500;9.58e-12;56!UBERON:0001981;9.58e-12;56!UBERON:0004537;9.58e-12;56!UBERON:0002049;5.20e-10;75!UBERON:0007798;5.20e-10;75!UBERON:0010523;2.31e-09;3!UBERON:0001915;2.31e-09;3!UBERON:0001982;2.31e-09;3!UBERON:0003914;4.11e-09;74!UBERON:0001009;9.29e-08;112!UBERON:0004535;1.01e-07;109!UBERON:0000025;1.34e-07;93!UBERON:0005800;7.04e-07;2!UBERON:0001515;7.04e-07;2!UBERON:0000074;8.48e-07;7!UBERON:0001229;8.48e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.30e-48,18;UBERON:0001986,2.30e-48,18;UBERON:0004852,2.30e-48,18;UBERON:0000487,1.39e-38,22;UBERON:0006914,2.64e-33,25;UBERON:0000055,3.14e-27,68;UBERON:0003915,3.50e-25,9;UBERON:0004700,3.50e-25,9;UBERON:0001917,3.50e-25,9;UBERON:0002049,1.19e-22,78;UBERON:0007798,1.19e-22,78;UBERON:0001009,9.22e-21,112;UBERON:0004535,3.76e-20,109;UBERON:0007500,3.79e-19,59;UBERON:0001981,3.79e-19,59;UBERON:0004537,3.79e-19,59;UBERON:0006965,3.79e-19,59;UBERON:0004872,1.53e-18,83;UBERON:0001638,1.40e-14,9;UBERON:0003920,1.40e-14,9;UBERON:0004582,1.40e-14,9;UBERON:0002465,4.21e-13,10;UBERON:0001473,1.48e-12,8;UBERON:0004536,1.48e-12,8;UBERON:0006558,1.48e-12,8;UBERON:0003914,3.00e-12,117;UBERON:0004111,7.19e-12,240;UBERON:0000025,6.26e-11,192;UBERON:0010523,2.29e-09,3;UBERON:0001915,2.29e-09,3;UBERON:0001982,2.29e-09,3;UBERON:0003081,1.44e-08,203;UBERON:0003887,6.53e-08,12;UBERON:0007023,6.21e-07,114;UBERON:0005800,7.06e-07,2;UBERON:0001515,7.06e-07,2;UBERON:0010532,8.69e-07,7;UBERON:0000074,8.69e-07,7;UBERON:0001229,8.69e-07,7;UBERON:0001230,8.69e-07,7;UBERON:0003220,8.69e-07,7;UBERON:0005749,8.69e-07,7;UBERON:0004199,8.69e-07,7;UBERON:0004209,8.69e-07,7;UBERON:0004198,8.69e-07,7 | |||
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| ||
|short_description=p3@ICAM2 | |||
}} | }} |
Latest revision as of 19:03, 16 September 2015
Short description: | p3@ICAM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ICAM2_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 29bp_to_ENST00000449662, NM_000873, uc002jdu.3_5end |
EntrezGene: | ICAM2 |
HGNC: | 5345 |
UniProt: | P13598Q6FHE2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 6.80e-65 | 36 |
endothelial cell of vascular tree | 4.83e-64 | 24 |
meso-epithelial cell | 4.66e-50 | 45 |
blood vessel endothelial cell | 2.30e-48 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.30e-48 | 18 |
lining cell | 8.78e-37 | 58 |
barrier cell | 8.78e-37 | 58 |
endothelial cell of artery | 3.50e-25 | 9 |
aortic endothelial cell | 3.13e-17 | 6 |
vein endothelial cell | 4.85e-17 | 6 |
lymphangioblast | 4.99e-17 | 6 |
endothelial cell of lymphatic vessel | 4.99e-17 | 6 |
vascular lymphangioblast | 4.99e-17 | 6 |
mesodermal cell | 3.71e-14 | 121 |
squamous epithelial cell | 3.59e-10 | 63 |
glomerular endothelial cell | 1.51e-09 | 5 |
capillary endothelial cell | 2.29e-09 | 3 |
endothelial cell of umbilical vein | 4.91e-09 | 3 |
thoracic aorta endothelial cell | 7.06e-07 | 2 |
glomerular cell | 8.69e-07 | 7 |
kidney corpuscule cell | 8.69e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 8.25e-11 | 8 |