FFCP PHASE1:Hg19::chrX:9866152..9866176,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=357 | |EntrezGene=357 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=630 | |HGNC=630 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000493668_5end | |association_with_transcript=-8bp_to_ENST00000493668_5end | ||
|cluster_id=chrX:9866152..9866176,+ | |||
|description=CAGE_peak_3_at_SHROOM2_5end | |description=CAGE_peak_3_at_SHROOM2_5end | ||
|id=chrX:9866152..9866176,+ | |id=chrX:9866152..9866176,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.93e-21!180;CL:0000062!6.21e-09!11;CL:0000375!6.21e-09!11;CL:0000335!6.21e-09!11;CL:0002540!4.60e-08!6;CL:0002556!9.11e-08!6;CL:0000183!1.89e-07!59;CL:0000680!3.57e-07!57;CL:0000056!3.57e-07!57;CL:0000355!3.57e-07!57;CL:0000188!4.89e-07!9;CL:0002092!6.23e-07!10;CL:0000057!6.66e-07!75 | |ontology_enrichment_celltype=CL:0000055!1.93e-21!180;CL:0000062!6.21e-09!11;CL:0000375!6.21e-09!11;CL:0000335!6.21e-09!11;CL:0002540!4.60e-08!6;CL:0002556!9.11e-08!6;CL:0000183!1.89e-07!59;CL:0000680!3.57e-07!57;CL:0000056!3.57e-07!57;CL:0000355!3.57e-07!57;CL:0000188!4.89e-07!9;CL:0002092!6.23e-07!10;CL:0000057!6.66e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002540;2.30e-14;6!CL:0002556;7.13e-14;6!CL:0000062;2.55e-11;9!CL:0002092;5.11e-11;10!CL:0002564;3.81e-07;3 | |ontology_enrichment_celltype_v019=CL:0002540;2.30e-14;6!CL:0002556;7.13e-14;6!CL:0000062;2.55e-11;9!CL:0002092;5.11e-11;10!CL:0002564;3.81e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002540,2.17e-14,6;CL:0002556,8.32e-14,6;CL:0000062,7.05e-12,11;CL:0000375,7.05e-12,11;CL:0000335,7.05e-12,11;CL:0002092,4.71e-11,10;CL:0002320,6.64e-08,361;CL:0000048,2.04e-07,427;CL:0002564,4.04e-07,3;CL:0000723,4.27e-07,433;CL:0000057,4.41e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000335;7.95e-12;11 | |ontology_enrichment_development_v019=CL:0000335;7.95e-12;11 | ||
|ontology_enrichment_disease=DOID:2394!3.71e-08!14 | |ontology_enrichment_disease=DOID:2394!3.71e-08!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.13e-14!123;UBERON:0000153!1.97e-13!129;UBERON:0007811!1.97e-13!129;UBERON:0000955!1.05e-12!69;UBERON:0006238!1.05e-12!69;UBERON:0002616!2.49e-12!59;UBERON:0001017!2.88e-12!82;UBERON:0000073!3.65e-12!94;UBERON:0001016!3.65e-12!94;UBERON:0001049!7.16e-12!57;UBERON:0005068!7.16e-12!57;UBERON:0006241!7.16e-12!57;UBERON:0007135!7.16e-12!57;UBERON:0005743!1.22e-11!86;UBERON:0004121!3.08e-11!169;UBERON:0000924!5.03e-11!173;UBERON:0006601!5.03e-11!173;UBERON:0000475!1.21e-10!365;UBERON:0000914!2.10e-10!83;UBERON:0002329!2.10e-10!83;UBERON:0003077!2.10e-10!83;UBERON:0003059!2.10e-10!83;UBERON:0007282!2.10e-10!83;UBERON:0009618!2.10e-10!83;UBERON:0007285!2.10e-10!83;UBERON:0003075!4.76e-10!86;UBERON:0007284!4.76e-10!86;UBERON:0002346!1.16e-09!90;UBERON:0003056!4.19e-09!61;UBERON:0000075!4.98e-09!13;UBERON:0005944!4.98e-09!13;UBERON:0004288!4.98e-09!13;UBERON:0003089!4.98e-09!13;UBERON:0002780!7.59e-09!41;UBERON:0001890!7.59e-09!41;UBERON:0006240!7.59e-09!41;UBERON:0002020!8.18e-09!34;UBERON:0003528!8.18e-09!34;UBERON:0001893!9.83e-09!34;UBERON:0003080!1.83e-08!42;UBERON:0002791!2.61e-08!33;UBERON:0001869!8.58e-08!32;UBERON:0001758!9.11e-08!6;UBERON:0003672!9.11e-08!6;UBERON:0003129!3.38e-07!11 | |ontology_enrichment_uberon=UBERON:0000033!2.13e-14!123;UBERON:0000153!1.97e-13!129;UBERON:0007811!1.97e-13!129;UBERON:0000955!1.05e-12!69;UBERON:0006238!1.05e-12!69;UBERON:0002616!2.49e-12!59;UBERON:0001017!2.88e-12!82;UBERON:0000073!3.65e-12!94;UBERON:0001016!3.65e-12!94;UBERON:0001049!7.16e-12!57;UBERON:0005068!7.16e-12!57;UBERON:0006241!7.16e-12!57;UBERON:0007135!7.16e-12!57;UBERON:0005743!1.22e-11!86;UBERON:0004121!3.08e-11!169;UBERON:0000924!5.03e-11!173;UBERON:0006601!5.03e-11!173;UBERON:0000475!1.21e-10!365;UBERON:0000914!2.10e-10!83;UBERON:0002329!2.10e-10!83;UBERON:0003077!2.10e-10!83;UBERON:0003059!2.10e-10!83;UBERON:0007282!2.10e-10!83;UBERON:0009618!2.10e-10!83;UBERON:0007285!2.10e-10!83;UBERON:0003075!4.76e-10!86;UBERON:0007284!4.76e-10!86;UBERON:0002346!1.16e-09!90;UBERON:0003056!4.19e-09!61;UBERON:0000075!4.98e-09!13;UBERON:0005944!4.98e-09!13;UBERON:0004288!4.98e-09!13;UBERON:0003089!4.98e-09!13;UBERON:0002780!7.59e-09!41;UBERON:0001890!7.59e-09!41;UBERON:0006240!7.59e-09!41;UBERON:0002020!8.18e-09!34;UBERON:0003528!8.18e-09!34;UBERON:0001893!9.83e-09!34;UBERON:0003080!1.83e-08!42;UBERON:0002791!2.61e-08!33;UBERON:0001869!8.58e-08!32;UBERON:0001758!9.11e-08!6;UBERON:0003672!9.11e-08!6;UBERON:0003129!3.38e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001434;2.65e-19;36!UBERON:0004765;5.44e-16;26!UBERON:0000075;4.49e-15;16!UBERON:0001758;7.13e-14;6!UBERON:0003672;7.13e-14;6!UBERON:0003129;9.28e-12;7!UBERON:0011135;4.96e-11;5!UBERON:0002216;4.96e-11;5!UBERON:0011134;4.96e-11;5!UBERON:0002209;4.96e-11;5!UBERON:0002213;4.96e-11;5!UBERON:0007844;4.96e-11;5!UBERON:0011138;4.96e-11;5!UBERON:0001130;4.96e-11;5!UBERON:0001066;4.96e-11;5!UBERON:0001468;4.96e-11;5!UBERON:0001474;7.55e-11;18!UBERON:0002371;5.84e-09;12!UBERON:0002204;1.32e-08;70!UBERON:0011137;3.77e-07;11!UBERON:0010323;3.77e-07;11!UBERON:0002242;3.81e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001434;2.65e-19;36!UBERON:0004765;5.44e-16;26!UBERON:0000075;4.49e-15;16!UBERON:0001758;7.13e-14;6!UBERON:0003672;7.13e-14;6!UBERON:0003129;9.28e-12;7!UBERON:0011135;4.96e-11;5!UBERON:0002216;4.96e-11;5!UBERON:0011134;4.96e-11;5!UBERON:0002209;4.96e-11;5!UBERON:0002213;4.96e-11;5!UBERON:0007844;4.96e-11;5!UBERON:0011138;4.96e-11;5!UBERON:0001130;4.96e-11;5!UBERON:0001066;4.96e-11;5!UBERON:0001468;4.96e-11;5!UBERON:0001474;7.55e-11;18!UBERON:0002371;5.84e-09;12!UBERON:0002204;1.32e-08;70!UBERON:0011137;3.77e-07;11!UBERON:0010323;3.77e-07;11!UBERON:0002242;3.81e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000075,5.39e-15,16;UBERON:0001758,8.32e-14,6;UBERON:0003672,8.32e-14,6;UBERON:0003129,1.06e-11,7;UBERON:0011137,1.21e-11,14;UBERON:0011135,5.62e-11,5;UBERON:0002216,5.62e-11,5;UBERON:0011134,5.62e-11,5;UBERON:0002209,5.62e-11,5;UBERON:0002213,5.62e-11,5;UBERON:0005856,5.62e-11,5;UBERON:0005866,5.62e-11,5;UBERON:0005863,5.62e-11,5;UBERON:0007844,5.62e-11,5;UBERON:0011138,5.62e-11,5;UBERON:0001130,5.62e-11,5;UBERON:0001066,5.62e-11,5;UBERON:0001468,5.62e-11,5;UBERON:0002384,2.38e-08,371;UBERON:0002242,4.04e-07,3;UBERON:0003068,4.04e-07,3;UBERON:0002328,4.04e-07,3;UBERON:0004880,4.04e-07,3;UBERON:0010323,4.08e-07,11 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0,0,0,0,4.33182235360163,2.31978163009541,0,1.20538905604795,0.730310090387373,0,0.246242116153576,0.816002764977012,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.579386075843295,0,2.91980922181582,0.472674085820339,0,0.614843499851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,1.81628913173918,0,0.234321431833797,0,0,0,0,0,0,3.47062091133319,2.82518929817066,0.929932030581889,0,8.40707559547093,0,0,3.03005005117319,2.62748891731125,2.21651292387346,15.8031943517102,6.74273150757843,9.01428353439581,0,0.179389635688862,0.640672166455702,1.90738711043606,0,1.8549455262919,0,0.558350568994769,0,0.0974370051611986,0,0.460249493211497,0.161646056818812,1.06502877754984,0.302256294682921,1.18692414617341,0,0,0,0,0,0,0.310983165046111,0,0,1.56449532329816,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,1.47008711385542,0,0,0,0,0,0.171567810298526,0,0,0,0,0,1.03993478527958,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0.190493682876507,1.14596527667483,0,0,2.15937734676979,11.1126931402249,0.857479297891735,10.2039286754278,0.87192013766656,5.4270331507503,0.775630294546667,0,0.845302752556,0.797814349754612,0,15.9468572042528,11.3479305618623,15.1860642039177,0,0,0,0,0,0,0,0,0,0,0,0,1.67737398844108,0,39.9383334114011,0,1.43833425785268,0.537182889719687,0,0,0,0,1.27047312111232,0,0,0,0,0,0,0,1.2269149171914,2.50085260529839,5.69656549769445,0.623912584592421,0.178428988797162,0.157702415033935,0.234282829985426,9.63027519128701,0,1.03473071292505,4.64957918974806,21.2024543822959,1.39013783148933,0.783204629850962,1.02943027143257,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.321707842287215,0,1.23367755042124,2.13074070375753,0,0.519254429183621,0,0,0,0,0.229628896329213,2.36718518408732,0.393373244878272,0,0,0,0,0,0,0,0.647747748306418,0,3.25135725052623,0,0,0,0,0,0,0,0,0,0,1.92295876118521,1.40266149865,0,0,0,0.386682873168488,1.07834031980251,0.15350367472613,1.10269257987624,0.322260734604821,0.290033387828457,0.852266274161009,0.801288320820636,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,2.97726695487734,1.89827654831236,0.38126038784765,3.58256907835867,0,0,0,0.719489830333259,0,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0,0,1.09199929126389,0,0,0,0,0,1.15755106853338,3.9353685122798,0,0.30982349809975,1.40847801266121,0.430234056612155,0.196498082026242,0.35667105148125,0.709522128141196,0,0,1.13841952129715,1.39973888097993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,3.77855879231341,0,0,0,1.17232857241224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0.890469640183247,0,0,0,0,0,6.3406583151336,0,0,0,0,0,0,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0.295547618953547,0,0,0,0,0.683652335082007,0,0,0,0.31900115973192,1.92354946143911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606610196826093,0,1.87411556580271,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,1.24807205711825,0,0,0,0,0,0,0,0,0,0,0.225980740780532,5.48167698587004,0.19871461170299,0.443175571691151,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.418411385249333,0.611989305817931,0,1.80126086612937,0.136905378891993,0,0.429765441419957,8.14950798265875,0,0,0,0.199679000498991,0,0,0.0671834724867263,3.96329871896644,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.242998226632099,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,2.39460383124975,0,0.170388021785422,2.03961764736226,0,0,0.517131825446202,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.1251909307065,0,0.332787154610557,0.496771223531068,0,0,0.606596470166591,7.42209867216915,0,0,0,0,0.233713309847224,0,7.76552321627865,3.52195062453605,2.66943366478961,0,0,0,0,2.70804504178294,0,0.931577741257556,3.7323558705677,3.19010057469594,5.73919567992907,0.150257608997218,0.380805212168795,0.406870733204662,6.7284003904947,0.107410557042488,0.464033759878494,5.17524655308201,0,0,0,3.78554694685953,0,0,0,0,0,0,0,0,0,0.530067437837643,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,7.37770739636887,0,0,0,0,0,0.157265941855896,0,0,0,0.495743057036009,0,0,0,0,0.705351887381368,0,0.256916900385838,0,0.478901577171454,0.41023272848151,0,0.414943514785307,0.322951291263702,1.42769420259154,0,0,0,0,3.81382095467167,4.1421595563606,0.596748666348824,0,4.63921658018096,0,0,0,0,0.405225507710368,0.781078098613847,1.03343398250592,0.634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.40781839786099,0.0657727735628491,0,1.4460082245969,0,0.157115589916002,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,2.48497201534187,2.2155485237381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.588925401344836,0.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| ||
|short_description=p3@SHROOM2 | |short_description=p3@SHROOM2 | ||
}} | }} |
Latest revision as of 15:37, 16 September 2015
Short description: | p3@SHROOM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHROOM2_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000493668_5end |
EntrezGene: | SHROOM2 |
HGNC: | 630 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 2.17e-14 | 6 |
fibroblast of periodontium | 8.32e-14 | 6 |
osteoblast | 7.05e-12 | 11 |
osteoprogenitor cell | 7.05e-12 | 11 |
mesenchyme condensation cell | 7.05e-12 | 11 |
bone marrow cell | 4.71e-11 | 10 |
connective tissue cell | 6.64e-08 | 361 |
multi fate stem cell | 2.04e-07 | 427 |
nucleus pulposus cell of intervertebral disc | 4.04e-07 | 3 |
somatic stem cell | 4.27e-07 | 433 |
fibroblast | 4.41e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
subdivision of skeletal system | 5.39e-15 | 16 |
periodontium | 8.32e-14 | 6 |
dentition | 8.32e-14 | 6 |
skull | 1.06e-11 | 7 |
axial skeletal system | 1.21e-11 | 14 |
intervertebral cartilage | 5.62e-11 | 5 |
symphysis | 5.62e-11 | 5 |
nonsynovial joint | 5.62e-11 | 5 |
fibrous joint | 5.62e-11 | 5 |
cartilaginous joint | 5.62e-11 | 5 |
developing mesenchymal condensation | 5.62e-11 | 5 |
pre-cartilage condensation | 5.62e-11 | 5 |
cartilaginous condensation | 5.62e-11 | 5 |
cartilage element | 5.62e-11 | 5 |
post-cranial axial skeletal system | 5.62e-11 | 5 |
vertebral column | 5.62e-11 | 5 |
intervertebral disk | 5.62e-11 | 5 |
intervertebral joint | 5.62e-11 | 5 |
connective tissue | 2.38e-08 | 371 |
nucleus pulposus | 4.04e-07 | 3 |
axial mesoderm | 4.04e-07 | 3 |
notochord | 4.04e-07 | 3 |
chordamesoderm | 4.04e-07 | 3 |
cranial skeletal system | 4.08e-07 | 11 |