FFCP PHASE1:Hg19::chr2:113999688..113999704,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7849 | |EntrezGene=7849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8622 | |HGNC=8622 | ||
|TSSclassifier=strong | |||
|UniProt=G3V463 | |UniProt=G3V463 | ||
|association_with_transcript=-332bp_to_ENST00000497038_5end | |association_with_transcript=-332bp_to_ENST00000497038_5end | ||
|cluster_id=chr2:113999688..113999704,- | |||
|description=CAGE_peak_15_at_PAX8_5end | |description=CAGE_peak_15_at_PAX8_5end | ||
|id=chr2:113999688..113999704,- | |id=chr2:113999688..113999704,- | ||
|ontology_enrichment_celltype=CL:0000159!2.06e-11!2;CL:0002149!1.56e-08!6;CL:0002255!1.56e-08!6 | |ontology_enrichment_celltype=CL:0000159!2.06e-11!2;CL:0002149!1.56e-08!6;CL:0002255!1.56e-08!6 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;6.61e-50;2!UBERON:0007123;4.68e-45;5!UBERON:0005754;6.72e-26;1!UBERON:0003918;7.29e-11;10!UBERON:0007687;7.29e-11;10 | |||
|ontology_enrichment_disease=DOID:120!4.09e-21!27;DOID:193!1.65e-19!29;DOID:4468!8.37e-12!2;DOID:299!1.69e-09!25;DOID:2394!5.98e-09!14;DOID:3001!1.56e-08!6 | |ontology_enrichment_disease=DOID:120!4.09e-21!27;DOID:193!1.65e-19!29;DOID:4468!8.37e-12!2;DOID:299!1.69e-09!25;DOID:2394!5.98e-09!14;DOID:3001!1.56e-08!6 | ||
|ontology_enrichment_disease_v019=DOID:4468;7.30e-14;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,7.30e-14,2 | |||
|ontology_enrichment_uberon=UBERON:0003133!9.57e-21!48;UBERON:0006947!3.62e-17!3;UBERON:0004054!3.62e-17!3;UBERON:0005156!2.82e-16!59;UBERON:0000990!2.82e-16!59;UBERON:0004175!2.32e-15!25;UBERON:0005904!5.31e-13!4;UBERON:0003135!5.97e-12!11;UBERON:0003134!8.34e-12!37;UBERON:0000474!8.34e-12!37;UBERON:0000341!2.06e-11!2;UBERON:0002113!2.38e-11!27;UBERON:0003918!2.38e-11!27;UBERON:0005095!2.38e-11!27;UBERON:0007687!2.38e-11!27;UBERON:0000991!4.82e-11!21;UBERON:0009196!4.82e-11!21;UBERON:0009117!4.82e-11!21;UBERON:0005564!4.82e-11!21;UBERON:0002046!1.25e-10!5;UBERON:0004117!1.25e-10!5;UBERON:0007689!1.25e-10!5;UBERON:0007123!1.25e-10!5;UBERON:0003091!1.25e-10!5;UBERON:0004176!1.68e-10!22;UBERON:0003100!1.76e-10!41;UBERON:0003886!2.04e-09!63;UBERON:0000489!2.21e-09!32;UBERON:0002553!3.03e-08!70;UBERON:0000995!3.52e-08!21;UBERON:0005795!8.79e-08!22;UBERON:0003975!8.79e-08!22;UBERON:0000080!2.91e-07!18;UBERON:0002120!2.91e-07!18;UBERON:0004875!2.91e-07!18;UBERON:0005721!2.91e-07!18;UBERON:0005754!2.91e-07!18;UBERON:0007297!2.91e-07!18;UBERON:0000998!6.23e-07!1;UBERON:0006868!6.23e-07!1;UBERON:0000058!6.94e-07!26;UBERON:0001301!7.35e-07!1;UBERON:0001000!9.67e-07!1;UBERON:0005352!9.67e-07!1 | |ontology_enrichment_uberon=UBERON:0003133!9.57e-21!48;UBERON:0006947!3.62e-17!3;UBERON:0004054!3.62e-17!3;UBERON:0005156!2.82e-16!59;UBERON:0000990!2.82e-16!59;UBERON:0004175!2.32e-15!25;UBERON:0005904!5.31e-13!4;UBERON:0003135!5.97e-12!11;UBERON:0003134!8.34e-12!37;UBERON:0000474!8.34e-12!37;UBERON:0000341!2.06e-11!2;UBERON:0002113!2.38e-11!27;UBERON:0003918!2.38e-11!27;UBERON:0005095!2.38e-11!27;UBERON:0007687!2.38e-11!27;UBERON:0000991!4.82e-11!21;UBERON:0009196!4.82e-11!21;UBERON:0009117!4.82e-11!21;UBERON:0005564!4.82e-11!21;UBERON:0002046!1.25e-10!5;UBERON:0004117!1.25e-10!5;UBERON:0007689!1.25e-10!5;UBERON:0007123!1.25e-10!5;UBERON:0003091!1.25e-10!5;UBERON:0004176!1.68e-10!22;UBERON:0003100!1.76e-10!41;UBERON:0003886!2.04e-09!63;UBERON:0000489!2.21e-09!32;UBERON:0002553!3.03e-08!70;UBERON:0000995!3.52e-08!21;UBERON:0005795!8.79e-08!22;UBERON:0003975!8.79e-08!22;UBERON:0000080!2.91e-07!18;UBERON:0002120!2.91e-07!18;UBERON:0004875!2.91e-07!18;UBERON:0005721!2.91e-07!18;UBERON:0005754!2.91e-07!18;UBERON:0007297!2.91e-07!18;UBERON:0000998!6.23e-07!1;UBERON:0006868!6.23e-07!1;UBERON:0000058!6.94e-07!26;UBERON:0001301!7.35e-07!1;UBERON:0001000!9.67e-07!1;UBERON:0005352!9.67e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002046;4.68e-45;5!UBERON:0006947;1.07e-33;3!UBERON:0004054;1.07e-33;3!UBERON:0000998;6.72e-26;1!UBERON:0001301;6.72e-26;1!UBERON:0006868;6.72e-26;1!UBERON:0005904;1.43e-25;4!UBERON:0004175;2.85e-11;21!UBERON:0000058;7.29e-11;10!UBERON:0003135;5.79e-10;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,3.47e-45,5;UBERON:0004117,3.47e-45,5;UBERON:0007689,3.47e-45,5;UBERON:0007123,3.47e-45,5;UBERON:0003091,3.47e-45,5;UBERON:0006947,7.70e-34,3;UBERON:0004054,7.70e-34,3;UBERON:0000998,3.58e-26,1;UBERON:0006868,3.58e-26,1;UBERON:0001301,7.62e-26,1;UBERON:0005904,1.11e-25,4;UBERON:0009722,4.98e-21,11;UBERON:0007690,4.98e-21,11;UBERON:0008814,3.77e-13,18;UBERON:0000080,5.22e-12,9;UBERON:0002120,5.22e-12,9;UBERON:0004875,5.22e-12,9;UBERON:0005721,5.22e-12,9;UBERON:0005754,5.22e-12,9;UBERON:0007297,5.22e-12,9;UBERON:0003135,5.29e-10,11;UBERON:0004876,5.29e-10,11;UBERON:0004175,1.39e-09,25;UBERON:0003887,3.01e-09,12;UBERON:0002113,3.16e-09,26;UBERON:0003918,3.16e-09,26;UBERON:0011143,3.16e-09,26;UBERON:0005095,3.16e-09,26;UBERON:0007687,3.16e-09,26;UBERON:0000489,7.71e-08,31;UBERON:0002530,3.50e-07,59;UBERON:0002368,4.48e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0.501689773854853,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66963057534359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53197677433632,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485560759068186,0.789168805698781,0,0,0,0,0,0,0,0,0,0.569219092059585,0,1.38847790668105,0,0.174118413160805,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10327990218877,0.209818352539992,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0.521745061811734,0,0.380805212168795,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69354820076372,0,0.31020638566432,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.606229585745915,0,0,0,0.639701945702943,0.23806443146374,0,0,0,4.13706528808072,1.41482032270754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0.501689773854853,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66963057534359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53197677433632,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485560759068186,0.789168805698781,0,0,0,0,0,0,0,0,0,0.569219092059585,0,1.38847790668105,0,0.174118413160805,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10327990218877,0.209818352539992,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0.521745061811734,0,0.380805212168795,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69354820076372,0,0.31020638566432,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.606229585745915,0,0,0,0.639701945702943,0.23806443146374,0,0,0,4.13706528808072,1.41482032270754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p15@PAX8 | |short_description=p15@PAX8 | ||
}} | }} |
Latest revision as of 13:11, 16 September 2015
Short description: | p15@PAX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_PAX8_5end |
Coexpression cluster: | NA |
Association with transcript: | -332bp_to_ENST00000497038_5end |
EntrezGene: | PAX8 |
HGNC: | 8622 |
UniProt: | G3V463 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thyroid gland | 3.47e-45 | 5 |
pharyngeal pouch | 3.47e-45 | 5 |
thyroid diverticulum | 3.47e-45 | 5 |
pharyngeal pouch 2 | 3.47e-45 | 5 |
thyroid primordium | 3.47e-45 | 5 |
male genital duct | 7.70e-34 | 3 |
internal male genitalia | 7.70e-34 | 3 |
seminal vesicle | 3.58e-26 | 1 |
seminal fluid secreting gland | 3.58e-26 | 1 |
epididymis | 7.62e-26 | 1 |
duct of male reproductive system | 1.11e-25 | 4 |
entire pharyngeal arch endoderm | 4.98e-21 | 11 |
early pharyngeal endoderm | 4.98e-21 | 11 |
pharyngeal arch system | 3.77e-13 | 18 |
mesonephros | 5.22e-12 | 9 |
pronephros | 5.22e-12 | 9 |
nephrogenic cord | 5.22e-12 | 9 |
pronephric mesoderm | 5.22e-12 | 9 |
rostral part of nephrogenic cord | 5.22e-12 | 9 |
presumptive pronephric mesoderm | 5.22e-12 | 9 |
male reproductive organ | 5.29e-10 | 11 |
urogenital ridge | 5.29e-10 | 11 |
internal genitalia | 1.39e-09 | 25 |
intraembryonic coelom | 3.01e-09 | 12 |
kidney | 3.16e-09 | 26 |
kidney mesenchyme | 3.16e-09 | 26 |
upper urinary tract | 3.16e-09 | 26 |
kidney rudiment | 3.16e-09 | 26 |
kidney field | 3.16e-09 | 26 |
cavitated compound organ | 7.71e-08 | 31 |
gland | 3.50e-07 | 59 |
endocrine gland | 4.48e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 7.30e-14 | 2 |