FFCP PHASE1:Hg19::chr11:119994643..119994655,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=29bp_to_uc001pwy.2_5end | |||
|cluster_id=chr11:119994643..119994655,- | |||
|coexpression_cluster_id=C2102 | |||
|description=CAGE_peak_10_at_TRIM29_5end | |||
|id=chr11:119994643..119994655,- | |||
|ontology_enrichment_celltype=CL:0000066!8.93e-15!254;CL:0000349!1.80e-08!3;CL:0002577!1.80e-08!3;CL:0002150!4.32e-08!3;CL:0000861!4.32e-08!3;CL:0002541!6.87e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.38e-36;19!CL:0002577;1.17e-22;3!CL:0002536;4.29e-15;2!CL:0002537;8.07e-14;5!CL:0002541;1.51e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.57e-36,19;CL:0002577,1.26e-22,3;CL:0002536,4.61e-15,2;CL:0002537,6.64e-14,5;CL:0002541,1.87e-10,3;CL:0000066,1.27e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.90e-23;29 | |||
|ontology_enrichment_disease=DOID:305!7.98e-22!106;DOID:0050687!2.14e-13!143;DOID:162!3.88e-09!235;DOID:14566!1.04e-08!239;DOID:1749!1.87e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:178;2.84e-08;1!DOID:326;2.84e-08;1!DOID:3978;2.84e-08;1!DOID:3394;2.84e-08;1!DOID:5844;2.84e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.51e-12,106;DOID:0050687,2.10e-08,143;DOID:178,2.46e-08,1;DOID:326,2.46e-08,1;DOID:3978,2.46e-08,1;DOID:3394,2.46e-08,1;DOID:5844,2.46e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!4.72e-23!14;UBERON:0000158!4.72e-23!14;UBERON:0001737!1.04e-21!9;UBERON:0001557!2.70e-18!19;UBERON:0003124!2.68e-16!7;UBERON:0000072!2.37e-13!46;UBERON:0000077!8.40e-13!130;UBERON:0000065!3.77e-12!53;UBERON:0000478!4.19e-12!24;UBERON:0004119!6.10e-12!169;UBERON:0000925!6.10e-12!169;UBERON:0006595!6.10e-12!169;UBERON:0001004!8.59e-12!72;UBERON:0008947!1.24e-10!38;UBERON:0003258!1.24e-10!38;UBERON:0001041!1.46e-10!98;UBERON:0001987!4.28e-10!4;UBERON:0004340!4.28e-10!4;UBERON:0000064!5.17e-09!219;UBERON:0000305!5.18e-09!7;UBERON:0001007!6.70e-09!155;UBERON:0001555!6.70e-09!155;UBERON:0007026!6.70e-09!155;UBERON:0004921!2.80e-08!129;UBERON:0004185!2.80e-08!129;UBERON:0002294!4.44e-08!7;UBERON:0001173!4.44e-08!7;UBERON:0004912!4.44e-08!7;UBERON:0000476!6.87e-08!3;UBERON:0000920!6.87e-08!3;UBERON:0004871!8.20e-08!8;UBERON:0004923!1.38e-07!57;UBERON:0000995!6.34e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.51e-50;9!UBERON:0001557;1.51e-50;9!UBERON:0005631;1.89e-34;10!UBERON:0000158;1.89e-34;10!UBERON:0000478;1.92e-28;24!UBERON:0000305;1.19e-25;7!UBERON:0001987;3.81e-17;4!UBERON:0000072;2.76e-16;37!UBERON:0000065;2.07e-14;44!UBERON:0003124;1.51e-10;3!UBERON:0000920;1.51e-10;3!UBERON:0001004;3.64e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.09e-50,9;UBERON:0005631,7.61e-50,14;UBERON:0000158,7.61e-50,14;UBERON:0000478,2.04e-28,24;UBERON:0000305,9.99e-26,7;UBERON:0003124,9.99e-26,7;UBERON:0001557,1.80e-23,19;UBERON:0004871,1.68e-22,8;UBERON:0008947,1.56e-17,38;UBERON:0003258,1.56e-17,38;UBERON:0001987,4.02e-17,4;UBERON:0004340,4.02e-17,4;UBERON:0000072,7.46e-14,47;UBERON:0000065,7.70e-12,54;UBERON:0000920,1.87e-10,3;UBERON:0001004,6.13e-10,74;UBERON:0004923,2.80e-09,66;UBERON:0001041,3.62e-08,87;UBERON:0004119,2.97e-07,160;UBERON:0000925,2.97e-07,160;UBERON:0006595,2.97e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.31064823278103,2.37390280405608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,2.72105640091641,4.04603256187444,1.92808823906786,3.52940712743661,3.92182999366331,3.55905928666645,5.12358971008625,3.33576490713088,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,6.65741758041988,3.62868351995616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0.445773537109913,0,5.72986763370456,1.78178808499583,15.9723565091601,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.269605053441981,0.537063524026827,0,0,0,0,0,0,0,0.7812832832557,0,0,0,0.254253650292766,2.36387681767936,0,0,0,0,0,0,0,0,0,0.32681539055697,0.83654246567162,0.0769502585037971,0,0,0,0,4.14701507651495,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391969589657511,0.0870592065804026,0,0,2.70917727609438,1.24251839046515,1.06750094169172,0.678923115418936,0,0,0,0,0,1.36885967914362,0,0.426905989478705,0.39961921916426,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,1.39775300349294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,9.86741031243341,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15571898244382,0,0,0,0,0,0,0,0,0,0,0,0,1.72715170865599,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0,0.111231401892069,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0.17071847709395,1.38251932362818,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0.0999411559249289,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.275684698604535,0,0.151557396436479,0,0,0,0.852935927603924,0,0.0645889098360061,0,0.112131862580613,0,0,0.217716747896961,0,0.606168477131288,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@TRIM29 | |||
}} |
Latest revision as of 04:47, 16 September 2015
Short description: | p10@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_TRIM29_5end |
Coexpression cluster: | C2102_amniotic_cervical_Placental_chorionic_Hep2_salivary_Corneal |
Association with transcript: | 29bp_to_uc001pwy.2_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.57e-36 | 19 |
placental epithelial cell | 1.26e-22 | 3 |
amniotic epithelial cell | 4.61e-15 | 2 |
amnion mesenchymal stem cell | 6.64e-14 | 5 |
chorionic membrane mesenchymal stem cell | 1.87e-10 | 3 |
epithelial cell | 1.27e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.09e-50 | 9 |
extraembryonic membrane | 7.61e-50 | 14 |
membranous layer | 7.61e-50 | 14 |
extraembryonic structure | 2.04e-28 | 24 |
amnion | 9.99e-26 | 7 |
chorion | 9.99e-26 | 7 |
upper respiratory tract | 1.80e-23 | 19 |
somatic layer of lateral plate mesoderm | 1.68e-22 | 8 |
respiratory primordium | 1.56e-17 | 38 |
endoderm of foregut | 1.56e-17 | 38 |
placenta | 4.02e-17 | 4 |
allantois | 4.02e-17 | 4 |
segment of respiratory tract | 7.46e-14 | 47 |
respiratory tract | 7.70e-12 | 54 |
egg chorion | 1.87e-10 | 3 |
respiratory system | 6.13e-10 | 74 |
organ component layer | 2.80e-09 | 66 |
foregut | 3.62e-08 | 87 |
endoderm-derived structure | 2.97e-07 | 160 |
endoderm | 2.97e-07 | 160 |
presumptive endoderm | 2.97e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.51e-12 | 106 |
cell type cancer | 2.10e-08 | 143 |
vascular disease | 2.46e-08 | 1 |
ischemia | 2.46e-08 | 1 |
extrinsic cardiomyopathy | 2.46e-08 | 1 |
myocardial ischemia | 2.46e-08 | 1 |
myocardial infarction | 2.46e-08 | 1 |