FFCP PHASE1:Hg19::chr11:119994605..119994622,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=62bp_to_uc001pwy.2_5end | |association_with_transcript=62bp_to_uc001pwy.2_5end | ||
|cluster_id=chr11:119994605..119994622,- | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_5_at_TRIM29_5end | |description=CAGE_peak_5_at_TRIM29_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.17e-26!254;CL:0002076!5.49e-13!43;CL:0000223!2.54e-11!59;CL:0002251!6.22e-09!21 | |ontology_enrichment_celltype=CL:0000066!1.17e-26!254;CL:0002076!5.49e-13!43;CL:0000223!2.54e-11!59;CL:0002251!6.22e-09!21 | ||
|ontology_enrichment_celltype_v019=CL:0000349;8.58e-22;19!CL:0002577;1.92e-12;3!CL:0002541;2.81e-11;3!CL:0002536;1.31e-08;2!CL:0000575;8.34e-08;2!CL:0002537;1.49e-07;5 | |ontology_enrichment_celltype_v019=CL:0000349;8.58e-22;19!CL:0002577;1.92e-12;3!CL:0002541;2.81e-11;3!CL:0002536;1.31e-08;2!CL:0000575;8.34e-08;2!CL:0002537;1.49e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.32e-22,19;CL:0000066,8.57e-14,253;CL:0002577,1.92e-12,3;CL:0002541,3.24e-11,3;CL:0002536,1.34e-08,2;CL:0000575,8.64e-08,2;CL:0002537,1.47e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.99e-16;29 | |ontology_enrichment_development_v019=UBERON:0008947;5.99e-16;29 | ||
|ontology_enrichment_disease=DOID:305!4.57e-24!106;DOID:0050687!1.06e-14!143;DOID:162!4.73e-09!235;DOID:14566!1.51e-08!239;DOID:1749!5.59e-07!14 | |ontology_enrichment_disease=DOID:305!4.57e-24!106;DOID:0050687!1.06e-14!143;DOID:162!4.73e-09!235;DOID:14566!1.51e-08!239;DOID:1749!5.59e-07!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.23e-17,106;DOID:0050687,2.35e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.55e-19!169;UBERON:0000925!3.55e-19!169;UBERON:0006595!3.55e-19!169;UBERON:0005631!5.37e-17!14;UBERON:0000158!5.37e-17!14;UBERON:0000072!1.18e-16!46;UBERON:0001004!1.18e-16!72;UBERON:0001737!5.83e-16!9;UBERON:0000065!1.06e-15!53;UBERON:0000077!3.67e-15!130;UBERON:0001007!6.82e-15!155;UBERON:0001555!6.82e-15!155;UBERON:0007026!6.82e-15!155;UBERON:0001557!1.31e-14!19;UBERON:0008947!9.32e-14!38;UBERON:0003258!9.32e-14!38;UBERON:0001041!2.15e-13!98;UBERON:0003124!2.31e-12!7;UBERON:0004921!2.29e-11!129;UBERON:0004185!2.29e-11!129;UBERON:0000064!1.86e-09!219;UBERON:0000478!2.05e-08!24;UBERON:0001987!5.80e-08!4;UBERON:0004340!5.80e-08!4;UBERON:0000062!1.30e-07!511;UBERON:0001048!3.58e-07!168;UBERON:0004923!4.06e-07!57;UBERON:0005911!7.02e-07!82;UBERON:0005795!7.36e-07!22;UBERON:0000305!9.30e-07!7 | |ontology_enrichment_uberon=UBERON:0004119!3.55e-19!169;UBERON:0000925!3.55e-19!169;UBERON:0006595!3.55e-19!169;UBERON:0005631!5.37e-17!14;UBERON:0000158!5.37e-17!14;UBERON:0000072!1.18e-16!46;UBERON:0001004!1.18e-16!72;UBERON:0001737!5.83e-16!9;UBERON:0000065!1.06e-15!53;UBERON:0000077!3.67e-15!130;UBERON:0001007!6.82e-15!155;UBERON:0001555!6.82e-15!155;UBERON:0007026!6.82e-15!155;UBERON:0001557!1.31e-14!19;UBERON:0008947!9.32e-14!38;UBERON:0003258!9.32e-14!38;UBERON:0001041!2.15e-13!98;UBERON:0003124!2.31e-12!7;UBERON:0004921!2.29e-11!129;UBERON:0004185!2.29e-11!129;UBERON:0000064!1.86e-09!219;UBERON:0000478!2.05e-08!24;UBERON:0001987!5.80e-08!4;UBERON:0004340!5.80e-08!4;UBERON:0000062!1.30e-07!511;UBERON:0001048!3.58e-07!168;UBERON:0004923!4.06e-07!57;UBERON:0005911!7.02e-07!82;UBERON:0005795!7.36e-07!22;UBERON:0000305!9.30e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.44e-32;9!UBERON:0001557;1.44e-32;9!UBERON:0005631;1.01e-22;10!UBERON:0000158;1.01e-22;10!UBERON:0000478;9.47e-20;24!UBERON:0001987;2.81e-15;4!UBERON:0000072;2.29e-14;37!UBERON:0000305;1.23e-13;7!UBERON:0000065;1.39e-11;44!UBERON:0003124;2.81e-11;3!UBERON:0000920;2.81e-11;3!UBERON:0002394;2.38e-08;4!UBERON:0003928;2.38e-08;4!UBERON:0002294;3.01e-08;7!UBERON:0001173;3.01e-08;7!UBERON:0001004;4.20e-07;65 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.44e-32;9!UBERON:0001557;1.44e-32;9!UBERON:0005631;1.01e-22;10!UBERON:0000158;1.01e-22;10!UBERON:0000478;9.47e-20;24!UBERON:0001987;2.81e-15;4!UBERON:0000072;2.29e-14;37!UBERON:0000305;1.23e-13;7!UBERON:0000065;1.39e-11;44!UBERON:0003124;2.81e-11;3!UBERON:0000920;2.81e-11;3!UBERON:0002394;2.38e-08;4!UBERON:0003928;2.38e-08;4!UBERON:0002294;3.01e-08;7!UBERON:0001173;3.01e-08;7!UBERON:0001004;4.20e-07;65 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.05e-36,14;UBERON:0000158,7.05e-36,14;UBERON:0001737,1.45e-32,9;UBERON:0003124,8.61e-25,7;UBERON:0001557,1.82e-21,19;UBERON:0000478,9.65e-20,24;UBERON:0000072,6.67e-16,47;UBERON:0008947,1.42e-15,38;UBERON:0003258,1.42e-15,38;UBERON:0001987,2.52e-15,4;UBERON:0004340,2.52e-15,4;UBERON:0001041,2.08e-14,87;UBERON:0000305,1.23e-13,7;UBERON:0000065,2.46e-13,54;UBERON:0004871,7.00e-12,8;UBERON:0004119,1.87e-11,160;UBERON:0000925,1.87e-11,160;UBERON:0006595,1.87e-11,160;UBERON:0001004,2.60e-11,74;UBERON:0000920,3.24e-11,3;UBERON:0005795,3.26e-09,22;UBERON:0004921,4.16e-09,118;UBERON:0001007,5.21e-09,145;UBERON:0001555,5.21e-09,145;UBERON:0007026,5.21e-09,145;UBERON:0004923,7.29e-09,66;UBERON:0000995,1.75e-07,21;UBERON:0003975,4.26e-07,22;UBERON:0001048,8.18e-07,160 | |||
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| ||
|short_description=p5@TRIM29 | |short_description=p5@TRIM29 | ||
}} | }} |
Latest revision as of 04:45, 16 September 2015
Short description: | p5@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TRIM29_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 62bp_to_uc001pwy.2_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.32e-22 | 19 |
epithelial cell | 8.57e-14 | 253 |
placental epithelial cell | 1.92e-12 | 3 |
chorionic membrane mesenchymal stem cell | 3.24e-11 | 3 |
amniotic epithelial cell | 1.34e-08 | 2 |
corneal epithelial cell | 8.64e-08 | 2 |
amnion mesenchymal stem cell | 1.47e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.05e-36 | 14 |
membranous layer | 7.05e-36 | 14 |
larynx | 1.45e-32 | 9 |
chorion | 8.61e-25 | 7 |
upper respiratory tract | 1.82e-21 | 19 |
extraembryonic structure | 9.65e-20 | 24 |
segment of respiratory tract | 6.67e-16 | 47 |
respiratory primordium | 1.42e-15 | 38 |
endoderm of foregut | 1.42e-15 | 38 |
placenta | 2.52e-15 | 4 |
allantois | 2.52e-15 | 4 |
foregut | 2.08e-14 | 87 |
amnion | 1.23e-13 | 7 |
respiratory tract | 2.46e-13 | 54 |
somatic layer of lateral plate mesoderm | 7.00e-12 | 8 |
endoderm-derived structure | 1.87e-11 | 160 |
endoderm | 1.87e-11 | 160 |
presumptive endoderm | 1.87e-11 | 160 |
respiratory system | 2.60e-11 | 74 |
egg chorion | 3.24e-11 | 3 |
embryonic uterus | 3.26e-09 | 22 |
subdivision of digestive tract | 4.16e-09 | 118 |
digestive system | 5.21e-09 | 145 |
digestive tract | 5.21e-09 | 145 |
primitive gut | 5.21e-09 | 145 |
organ component layer | 7.29e-09 | 66 |
uterus | 1.75e-07 | 21 |
internal female genitalia | 4.26e-07 | 22 |
primordium | 8.18e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.23e-17 | 106 |
cell type cancer | 2.35e-11 | 143 |