FFCP PHASE1:Hg19::chr11:119993734..119993778,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000531555,ENST00000533302_5end | |association_with_transcript=0bp_to_ENST00000531555,ENST00000533302_5end | ||
|cluster_id=chr11:119993734..119993778,- | |||
|description=CAGE_peak_2_at_TRIM29_5end | |description=CAGE_peak_2_at_TRIM29_5end | ||
|id=chr11:119993734..119993778,- | |id=chr11:119993734..119993778,- | ||
|ontology_enrichment_celltype=CL:0000066!1.44e-23!254;CL:0002076!1.45e-14!43;CL:0002251!1.15e-10!21;CL:0000223!8.20e-10!59;CL:0002159!2.36e-08!13;CL:0000076!1.11e-07!62 | |ontology_enrichment_celltype=CL:0000066!1.44e-23!254;CL:0002076!1.45e-14!43;CL:0002251!1.15e-10!21;CL:0000223!8.20e-10!59;CL:0002159!2.36e-08!13;CL:0000076!1.11e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.10e-11;14!CL:0002076;1.80e-09;42!CL:0002251;5.18e-09;20!CL:0000349;1.00e-08;19!CL:0002577;5.72e-07;3!CL:0000150;9.42e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.59e-21,253;CL:0002076,4.15e-13,42;CL:0002159,1.14e-11,14;CL:0002251,5.00e-09,20;CL:0000349,1.04e-08,19;CL:0000223,4.80e-08,58;CL:0002577,5.50e-07,3;CL:0000150,8.86e-07,9;CL:0002621,9.56e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.74e-09;29 | |||
|ontology_enrichment_disease=DOID:305!1.07e-14!106;DOID:1749!7.32e-08!14;DOID:0050687!9.15e-08!143;DOID:162!5.08e-07!235 | |ontology_enrichment_disease=DOID:305!1.07e-14!106;DOID:1749!7.32e-08!14;DOID:0050687!9.15e-08!143;DOID:162!5.08e-07!235 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.30e-11,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.75e-24!169;UBERON:0000925!7.75e-24!169;UBERON:0006595!7.75e-24!169;UBERON:0001004!3.07e-19!72;UBERON:0000077!7.25e-18!130;UBERON:0001007!4.24e-17!155;UBERON:0001555!4.24e-17!155;UBERON:0007026!4.24e-17!155;UBERON:0000065!3.04e-16!53;UBERON:0004921!5.27e-15!129;UBERON:0004185!5.27e-15!129;UBERON:0000072!4.03e-14!46;UBERON:0001557!1.57e-13!19;UBERON:0001041!3.29e-13!98;UBERON:0001737!1.57e-12!9;UBERON:0005631!1.01e-11!14;UBERON:0000158!1.01e-11!14;UBERON:0008947!1.96e-11!38;UBERON:0003258!1.96e-11!38;UBERON:0000161!1.34e-09!35;UBERON:0003124!6.95e-09!7;UBERON:0000166!2.90e-08!21;UBERON:0000064!1.19e-07!219;UBERON:0005911!5.75e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.65e-18;9!UBERON:0001557;1.65e-18;9!UBERON:0000072;1.88e-11;37!UBERON:0000065;1.94e-10;44!UBERON:0005631;4.90e-09;10!UBERON:0000158;4.90e-09;10!UBERON:0001987;1.72e-08;4!UBERON:0000478;8.24e-08;24!UBERON:0001004;2.47e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001557,6.35e-19,19;UBERON:0001737,1.64e-18,9;UBERON:0004119,3.74e-18,160;UBERON:0000925,3.74e-18,160;UBERON:0006595,3.74e-18,160;UBERON:0001004,7.39e-18,74;UBERON:0000072,2.91e-16,47;UBERON:0000065,7.64e-16,54;UBERON:0001041,1.30e-15,87;UBERON:0005631,2.84e-15,14;UBERON:0000158,2.84e-15,14;UBERON:0003124,7.05e-13,7;UBERON:0001007,1.04e-12,145;UBERON:0001555,1.04e-12,145;UBERON:0007026,1.04e-12,145;UBERON:0008947,2.61e-12,38;UBERON:0003258,2.61e-12,38;UBERON:0004921,3.93e-12,118;UBERON:0001987,1.74e-08,4;UBERON:0004340,1.74e-08,4;UBERON:0000478,8.70e-08,24;UBERON:0000166,7.48e-07,22;UBERON:0004923,9.24e-07,66;UBERON:0001949,9.56e-07,3 | |||
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| ||
|short_description=p2@TRIM29 | |short_description=p2@TRIM29 | ||
}} | }} |
Latest revision as of 04:44, 16 September 2015
Short description: | p2@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRIM29_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000531555, ENST00000533302_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.59e-21 | 253 |
endo-epithelial cell | 4.15e-13 | 42 |
general ecto-epithelial cell | 1.14e-11 | 14 |
epithelial cell of alimentary canal | 5.00e-09 | 20 |
extraembryonic cell | 1.04e-08 | 19 |
endodermal cell | 4.80e-08 | 58 |
placental epithelial cell | 5.50e-07 | 3 |
glandular epithelial cell | 8.86e-07 | 9 |
gingival epithelial cell | 9.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
upper respiratory tract | 6.35e-19 | 19 |
larynx | 1.64e-18 | 9 |
endoderm-derived structure | 3.74e-18 | 160 |
endoderm | 3.74e-18 | 160 |
presumptive endoderm | 3.74e-18 | 160 |
respiratory system | 7.39e-18 | 74 |
segment of respiratory tract | 2.91e-16 | 47 |
respiratory tract | 7.64e-16 | 54 |
foregut | 1.30e-15 | 87 |
extraembryonic membrane | 2.84e-15 | 14 |
membranous layer | 2.84e-15 | 14 |
chorion | 7.05e-13 | 7 |
digestive system | 1.04e-12 | 145 |
digestive tract | 1.04e-12 | 145 |
primitive gut | 1.04e-12 | 145 |
respiratory primordium | 2.61e-12 | 38 |
endoderm of foregut | 2.61e-12 | 38 |
subdivision of digestive tract | 3.93e-12 | 118 |
placenta | 1.74e-08 | 4 |
allantois | 1.74e-08 | 4 |
extraembryonic structure | 8.70e-08 | 24 |
oral opening | 7.48e-07 | 22 |
organ component layer | 9.24e-07 | 66 |
gingival epithelium | 9.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.30e-11 | 106 |