FFCP PHASE1:Hg19::chr20:34025900..34025919,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8200 | |EntrezGene=8200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4220 | |HGNC=4220 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=29bp_to_uc010gfc.1_5end | |association_with_transcript=29bp_to_uc010gfc.1_5end | ||
|cluster_id=chr20:34025900..34025919,- | |||
|coexpression_cluster_id=C2614 | |coexpression_cluster_id=C2614 | ||
|description=CAGE_peak_3_at_GDF5_5end | |description=CAGE_peak_3_at_GDF5_5end | ||
|id=chr20:34025900..34025919,- | |id=chr20:34025900..34025919,- | ||
|ontology_enrichment_celltype=CL:0000055!2.06e-27!180;CL:0000057!6.41e-16!75;CL:0000183!1.27e-14!59;CL:0000144!1.89e-12!625;CL:0002371!4.33e-12!591;CL:0000187!1.54e-11!54;CL:0000680!4.11e-11!57;CL:0000056!4.11e-11!57;CL:0000355!4.11e-11!57;CL:0000393!2.26e-09!60;CL:0000211!2.26e-09!60;CL:0000192!4.48e-09!42;CL:0000514!4.48e-09!42;CL:0000048!5.02e-09!430;CL:0000548!7.42e-09!679;CL:0000004!7.42e-09!679;CL:0000255!7.42e-09!679;CL:0000723!9.95e-09!436;CL:0000012!1.39e-08!682;CL:0000499!1.57e-08!27;CL:0000034!2.97e-08!444;CL:0002540!4.70e-08!6;CL:0000222!4.95e-08!119;CL:0000630!3.93e-07!9;CL:0000327!6.70e-07!14 | |ontology_enrichment_celltype=CL:0000055!2.06e-27!180;CL:0000057!6.41e-16!75;CL:0000183!1.27e-14!59;CL:0000144!1.89e-12!625;CL:0002371!4.33e-12!591;CL:0000187!1.54e-11!54;CL:0000680!4.11e-11!57;CL:0000056!4.11e-11!57;CL:0000355!4.11e-11!57;CL:0000393!2.26e-09!60;CL:0000211!2.26e-09!60;CL:0000192!4.48e-09!42;CL:0000514!4.48e-09!42;CL:0000048!5.02e-09!430;CL:0000548!7.42e-09!679;CL:0000004!7.42e-09!679;CL:0000255!7.42e-09!679;CL:0000723!9.95e-09!436;CL:0000012!1.39e-08!682;CL:0000499!1.57e-08!27;CL:0000034!2.97e-08!444;CL:0002540!4.70e-08!6;CL:0000222!4.95e-08!119;CL:0000630!3.93e-07!9;CL:0000327!6.70e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002540;9.36e-14;6!CL:0000499;5.02e-11;28!CL:0000138;5.71e-09;6!CL:0000669;1.17e-08;4!CL:0000153;5.99e-08;9!CL:0000447;5.99e-08;9!CL:0002564;7.12e-08;3!CL:0002092;7.38e-08;10!CL:0000135;4.24e-07;3!CL:0000388;4.24e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,8.72e-14,6;CL:0000499,4.69e-11,28;CL:0000058,4.24e-09,6;CL:0000138,4.24e-09,6;CL:0000669,1.59e-08,4;CL:0000153,4.31e-08,9;CL:0000447,4.31e-08,9;CL:0002092,7.09e-08,10;CL:0002564,7.18e-08,3;CL:0000135,6.45e-07,3;CL:0000388,6.45e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.56e-11!83;UBERON:0002329!1.56e-11!83;UBERON:0003077!1.56e-11!83;UBERON:0003059!1.56e-11!83;UBERON:0007282!1.56e-11!83;UBERON:0009618!1.56e-11!83;UBERON:0007285!1.56e-11!83;UBERON:0001134!1.05e-09!61;UBERON:0002036!1.05e-09!61;UBERON:0003082!1.05e-09!61;UBERON:0005256!2.37e-09!143;UBERON:0002385!4.41e-09!63;UBERON:0001015!4.41e-09!63;UBERON:0000383!4.41e-09!63;UBERON:0002200!1.12e-08!11;UBERON:0006876!1.12e-08!11;UBERON:0004290!1.20e-08!70;UBERON:0000475!1.61e-07!365;UBERON:0001444!4.18e-07!48;UBERON:0000486!4.36e-07!82;UBERON:0001801!4.44e-07!14 | |ontology_enrichment_uberon=UBERON:0000914!1.56e-11!83;UBERON:0002329!1.56e-11!83;UBERON:0003077!1.56e-11!83;UBERON:0003059!1.56e-11!83;UBERON:0007282!1.56e-11!83;UBERON:0009618!1.56e-11!83;UBERON:0007285!1.56e-11!83;UBERON:0001134!1.05e-09!61;UBERON:0002036!1.05e-09!61;UBERON:0003082!1.05e-09!61;UBERON:0005256!2.37e-09!143;UBERON:0002385!4.41e-09!63;UBERON:0001015!4.41e-09!63;UBERON:0000383!4.41e-09!63;UBERON:0002200!1.12e-08!11;UBERON:0006876!1.12e-08!11;UBERON:0004290!1.20e-08!70;UBERON:0000475!1.61e-07!365;UBERON:0001444!4.18e-07!48;UBERON:0000486!4.36e-07!82;UBERON:0001801!4.44e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0006876;7.09e-13;11!UBERON:0011135;4.99e-12;5!UBERON:0002216;4.99e-12;5!UBERON:0011134;4.99e-12;5!UBERON:0002209;4.99e-12;5!UBERON:0002213;4.99e-12;5!UBERON:0007844;4.99e-12;5!UBERON:0011138;4.99e-12;5!UBERON:0001130;4.99e-12;5!UBERON:0001066;4.99e-12;5!UBERON:0001468;4.99e-12;5!UBERON:0002203;5.72e-11;6!UBERON:0001768;5.72e-11;6!UBERON:0002200;5.72e-11;6!UBERON:0004765;3.67e-10;26!UBERON:0004905;7.11e-10;8!UBERON:0000982;7.11e-10;8!UBERON:0004770;7.11e-10;8!UBERON:0002242;7.12e-08;3!UBERON:0000488;1.13e-07;4!UBERON:0001801;1.27e-07;14!UBERON:0007846;4.24e-07;3!UBERON:0000043;4.24e-07;3!UBERON:0007845;4.24e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,5.32e-13,11;UBERON:0011135,4.90e-12,5;UBERON:0002216,4.90e-12,5;UBERON:0011134,4.90e-12,5;UBERON:0002209,4.90e-12,5;UBERON:0002213,4.90e-12,5;UBERON:0005856,4.90e-12,5;UBERON:0005866,4.90e-12,5;UBERON:0005863,4.90e-12,5;UBERON:0007844,4.90e-12,5;UBERON:0011138,4.90e-12,5;UBERON:0001130,4.90e-12,5;UBERON:0001066,4.90e-12,5;UBERON:0001468,4.90e-12,5;UBERON:0002203,5.27e-11,6;UBERON:0001768,5.27e-11,6;UBERON:0002200,5.27e-11,6;UBERON:0004905,6.20e-10,8;UBERON:0000982,6.20e-10,8;UBERON:0004770,6.20e-10,8;UBERON:0002242,7.18e-08,3;UBERON:0003068,7.18e-08,3;UBERON:0002328,7.18e-08,3;UBERON:0004880,7.18e-08,3;UBERON:0000488,1.12e-07,4;UBERON:0001801,1.56e-07,14;UBERON:0007846,6.45e-07,3;UBERON:0000043,6.45e-07,3;UBERON:0007845,6.45e-07,3 | |||
|phase1_expression=0.181678379270557,0,0.986680828671798,0,0,0,0,1.26343974685366,0,0.245733936501509,0,0,0,10.643906354564,5.96515276310248,1.34465029290355,1.80808358407193,2.92124036154949,0.975865597581014,0.61560529038394,1.83600622119828,0.313454721478088,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,2.53007406669196,7.52006865953834,2.60723734129483,1.5905718941022,8.27279279514481,1.13441780596881,1.33037638477538,1.49319135678314,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,2.5326102332916,1.45650098894541,0,1.06400514659507,3.36406560085384,0,0,1.24484414159907,0.134710672069688,0.326923806226917,1.51357427644931,0,1.40592859100278,0,0,0,0,0,0,0,0.368502951935304,0.206651562351531,0,0,3.64064544775211,8.62341770179486,0.168336113954066,0.125118519871964,0,0.438977620880838,1.5324389789951,0.300476117813194,0,0.179389635688862,0.640672166455702,1.27159140695737,0.300091096084402,0.824420233907511,0,0,0,0.292311015483596,0.252433774244115,0.552299391853796,0.484938170456436,0.710019185033229,0.302256294682921,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,0,1.28648187638577,1.38134921352481,1.39310378409594,4.33127689001751,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0,0,0,0,1.71567810298526,0,0,0,0.0925884451585296,0.651616610620649,1.03993478527958,4.3299402607582,0.811512834825538,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0.517086863031111,0,0.845302752556,0.26593811658487,0,3.08648849114571,2.83698264046557,4.26275486425759,0,3.25572963234866,0,0,0,0,1.80863626235752,1.74306691720059,0.499864955910285,0,0,0,2.87549826589899,1.14861935834114,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53958519360818,9.50323990013386,10.5793359242897,0.207970861530807,0.356857977594324,0,0,3.00946099727719,2.27407504055985,2.0694614258501,1.99267679560631,6.0841825618762,1.39013783148933,2.15381273209015,2.40200396667599,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.321707842287215,1.48418066444991,0.308419387605311,0.355123450626254,1.39616165223476,0.519254429183621,0.929683027679674,0,0,0,1.03333003348146,1.82091168006717,4.58935452357984,0.451199612907412,0,2.35304930753057,1.46139224653261,0,0,0.170093705276516,0.215915916102139,0,1.35473218771926,3.01013864312912,0.254876273045038,0,0.671624264166535,0,0,0,0.328014645699706,0.976135183992909,0,0,0,0,0,0,0.870036464629098,0.308097234229289,0.614014698904518,0,1.6113036730241,0,0.596586391912706,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0.74129687641568,0.143124886741991,0.372158369359667,2.53103539774981,3.62197368455267,10.2359116524534,1.28381696410176,0.318203247925937,0,0,0,0.706874414074119,0.202182481573316,0,0,1.46290121726877,0,0,0.409499734223957,0,1.13008116620243,0,0.66343897524122,0.438450885253763,13.3118372881338,4.59126326432643,0.405820753925408,0,0.845086807596724,0.860468113224309,1.96498082026242,0.7133421029625,0.354761064070598,1.47775344708365,0.329294892959902,1.51789269506286,2.0996083214699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0.933118762985422,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.638323896594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.4939769017153,0,5.22539776175055,0,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895528817321244,0,0.554805861502613,13.2582103692562,17.3581852209277,8.89811221596536,0.457680136793847,2.57092570397506,0.15543720058278,0,0,0,0,0.414706207840855,0.265841714557995,1.04349012362347,1.20206087197775,1.14241563650639,0.406870733204662,0.181848659202559,0.322231671127465,2.78420255927096,0.398095888698616,0,0.686791410365586,0,0,0,0,0,0,0,0,2.14906609297785,0,10.9642024789354,1.76689145945881,10.4173580666294,1.35153952522458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10463570151104,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,2.1160556621441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45051314914126,2.56077715640925,1.38251932362818,0.430227358820278,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817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| ||
|short_description=p3@GDF5 | |short_description=p3@GDF5 | ||
}} | }} |
Latest revision as of 20:01, 15 September 2015
Short description: | p3@GDF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GDF5_5end |
Coexpression cluster: | C2614_mesenchymal_leiomyoma_mesothelioma_Anulus_Nucleus_Smooth_epithelioid |
Association with transcript: | 29bp_to_uc010gfc.1_5end |
EntrezGene: | GDF5 |
HGNC: | 4220 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 8.72e-14 | 6 |
stromal cell | 4.69e-11 | 28 |
chondroblast | 4.24e-09 | 6 |
chondrocyte | 4.24e-09 | 6 |
pericyte cell | 1.59e-08 | 4 |
GAG secreting cell | 4.31e-08 | 9 |
carbohydrate secreting cell | 4.31e-08 | 9 |
bone marrow cell | 7.09e-08 | 10 |
nucleus pulposus cell of intervertebral disc | 7.18e-08 | 3 |
fibrocyte | 6.45e-07 | 3 |
tendon cell | 6.45e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 5.32e-13 | 11 |
intervertebral cartilage | 4.90e-12 | 5 |
symphysis | 4.90e-12 | 5 |
nonsynovial joint | 4.90e-12 | 5 |
fibrous joint | 4.90e-12 | 5 |
cartilaginous joint | 4.90e-12 | 5 |
developing mesenchymal condensation | 4.90e-12 | 5 |
pre-cartilage condensation | 4.90e-12 | 5 |
cartilaginous condensation | 4.90e-12 | 5 |
cartilage element | 4.90e-12 | 5 |
post-cranial axial skeletal system | 4.90e-12 | 5 |
vertebral column | 4.90e-12 | 5 |
intervertebral disk | 4.90e-12 | 5 |
intervertebral joint | 4.90e-12 | 5 |
vasculature of eye | 5.27e-11 | 6 |
uvea | 5.27e-11 | 6 |
vasculature of head | 5.27e-11 | 6 |
articulation | 6.20e-10 | 8 |
skeletal joint | 6.20e-10 | 8 |
articular system | 6.20e-10 | 8 |
nucleus pulposus | 7.18e-08 | 3 |
axial mesoderm | 7.18e-08 | 3 |
notochord | 7.18e-08 | 3 |
chordamesoderm | 7.18e-08 | 3 |
atypical epithelium | 1.12e-07 | 4 |
anterior segment of eyeball | 1.56e-07 | 14 |
dense regular connective tissue | 6.45e-07 | 3 |
tendon | 6.45e-07 | 3 |
regular connective tissue | 6.45e-07 | 3 |