FFCP PHASE1:Hg19::chr11:116708366..116708380,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=335 | |EntrezGene=335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=600 | |HGNC=600 | ||
|TSSclassifier=strong | |||
|UniProt=P02647 | |UniProt=P02647 | ||
|association_with_transcript=-28bp_to_NM_000039,uc001ppv.1_5end | |association_with_transcript=-28bp_to_NM_000039,uc001ppv.1_5end | ||
|cluster_id=chr11:116708366..116708380,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_APOA1_5end | |description=CAGE_peak_2_at_APOA1_5end | ||
|id=chr11:116708366..116708380,- | |id=chr11:116708366..116708380,- | ||
|ontology_enrichment_celltype=CL:0000181!1.51e-12!12;CL:0000417!1.51e-12!12;CL:0000668!1.51e-12!12;CL:0000414!1.51e-12!12;CL:0000412!1.51e-12!12;CL:0000182!1.51e-12!12 | |ontology_enrichment_celltype=CL:0000181!1.51e-12!12;CL:0000417!1.51e-12!12;CL:0000668!1.51e-12!12;CL:0000414!1.51e-12!12;CL:0000412!1.51e-12!12;CL:0000182!1.51e-12!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.92e-20;12!CL:0002322;4.13e-09;5!CL:0000746;6.59e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.92e-20,12;CL:0002322,4.31e-09,5;CL:0000746,6.20e-07,3;CL:0000513,6.20e-07,3;CL:0000223,6.47e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.19e-16;11!UBERON:0009497;1.25e-13;13!UBERON:0003104;3.37e-07;31!CL:0000513;6.59e-07;3 | |||
|ontology_enrichment_disease=DOID:2394!1.86e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.98e-14!19;UBERON:0006925!3.98e-14!19;UBERON:0008836!3.98e-14!19;UBERON:0009497!7.19e-12!25;UBERON:0000015!7.19e-12!25;UBERON:0002423!7.19e-12!25;UBERON:0006235!7.19e-12!25;UBERON:0004161!7.19e-12!25;UBERON:0008835!8.10e-12!22;UBERON:0003894!8.10e-12!22;UBERON:0005057!2.23e-11!26;UBERON:0003929!2.72e-11!54;UBERON:0007100!2.75e-11!27;UBERON:0009854!3.49e-11!23;UBERON:0002368!2.42e-10!35;UBERON:0007499!4.52e-10!25;UBERON:0009856!1.40e-09!26;UBERON:0001048!1.19e-08!168;UBERON:0002365!1.30e-07!31;UBERON:0002330!1.30e-07!31;UBERON:0000948!1.82e-07!24;UBERON:0005498!1.82e-07!24;UBERON:0004140!1.82e-07!24;UBERON:0009881!1.82e-07!24;UBERON:0004141!1.82e-07!24;UBERON:0003084!1.82e-07!24;UBERON:0007005!1.82e-07!24;UBERON:0004139!1.82e-07!24;UBERON:0004291!1.82e-07!24;UBERON:0003914!2.45e-07!118;UBERON:0000949!2.77e-07!45;UBERON:0000992!4.15e-07!13;UBERON:0000991!6.81e-07!21;UBERON:0009196!6.81e-07!21;UBERON:0009117!6.81e-07!21;UBERON:0005564!6.81e-07!21;UBERON:0003103!7.33e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;6.17e-25;19!UBERON:0006925;6.17e-25;19!UBERON:0002423;1.77e-18;25!UBERON:0002365;3.38e-14;31!UBERON:0002330;3.38e-14;31!UBERON:0000160;1.23e-12;17!UBERON:0002368;1.40e-12;33!UBERON:0005409;1.84e-12;22!UBERON:0002108;1.54e-09;4!UBERON:0000949;3.79e-09;43!UBERON:0001007;1.30e-08;81!UBERON:0004921;1.28e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.66e-25,19;UBERON:0006925,6.66e-25,19;UBERON:0008836,6.66e-25,19;UBERON:0008835,3.08e-21,22;UBERON:0003894,3.08e-21,22;UBERON:0009854,3.14e-20,23;UBERON:0007499,1.88e-18,25;UBERON:0009497,1.88e-18,25;UBERON:0000015,1.88e-18,25;UBERON:0002423,1.88e-18,25;UBERON:0006235,1.88e-18,25;UBERON:0004161,1.88e-18,25;UBERON:0009856,1.15e-17,26;UBERON:0003929,3.79e-15,54;UBERON:0002365,1.68e-14,31;UBERON:0002330,1.68e-14,31;UBERON:0000160,1.22e-12,17;UBERON:0002368,1.28e-12,35;UBERON:0004921,4.37e-12,118;UBERON:0005409,6.73e-11,25;UBERON:0002108,1.54e-09,4;UBERON:0000949,2.18e-09,45;UBERON:0001007,5.03e-09,145;UBERON:0001555,5.03e-09,145;UBERON:0007026,5.03e-09,145;UBERON:0005911,6.15e-09,82;UBERON:0002530,3.27e-08,59;UBERON:0004119,8.87e-08,160;UBERON:0000925,8.87e-08,160;UBERON:0006595,8.87e-08,160;UBERON:0005172,1.65e-07,54;UBERON:0005173,1.65e-07,54;UBERON:0003914,4.19e-07,117 | |||
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| ||
|short_description=p2@APOA1 | |short_description=p2@APOA1 | ||
}} | }} |
Latest revision as of 19:59, 15 September 2015
Short description: | p2@APOA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APOA1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -28bp_to_NM_000039, uc001ppv.1_5end |
EntrezGene: | APOA1 |
HGNC: | 600 |
UniProt: | P02647 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.92e-20 | 12 |
embryonic stem cell | 4.31e-09 | 5 |
cardiac muscle cell | 6.20e-07 | 3 |
cardiac muscle myoblast | 6.20e-07 | 3 |
endodermal cell | 6.47e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 6.66e-25 | 19 |
digestive gland | 6.66e-25 | 19 |
liver bud | 6.66e-25 | 19 |
hepatic diverticulum | 3.08e-21 | 22 |
liver primordium | 3.08e-21 | 22 |
digestive tract diverticulum | 3.14e-20 | 23 |
epithelial sac | 1.88e-18 | 25 |
epithelium of foregut-midgut junction | 1.88e-18 | 25 |
anatomical boundary | 1.88e-18 | 25 |
hepatobiliary system | 1.88e-18 | 25 |
foregut-midgut junction | 1.88e-18 | 25 |
septum transversum | 1.88e-18 | 25 |
sac | 1.15e-17 | 26 |
gut epithelium | 3.79e-15 | 54 |
exocrine gland | 1.68e-14 | 31 |
exocrine system | 1.68e-14 | 31 |
intestine | 1.22e-12 | 17 |
endocrine gland | 1.28e-12 | 35 |
subdivision of digestive tract | 4.37e-12 | 118 |
gastrointestinal system | 6.73e-11 | 25 |
small intestine | 1.54e-09 | 4 |
endocrine system | 2.18e-09 | 45 |
digestive system | 5.03e-09 | 145 |
digestive tract | 5.03e-09 | 145 |
primitive gut | 5.03e-09 | 145 |
endo-epithelium | 6.15e-09 | 82 |
gland | 3.27e-08 | 59 |
endoderm-derived structure | 8.87e-08 | 160 |
endoderm | 8.87e-08 | 160 |
presumptive endoderm | 8.87e-08 | 160 |
abdomen element | 1.65e-07 | 54 |
abdominal segment element | 1.65e-07 | 54 |
epithelial tube | 4.19e-07 | 117 |