FFCP PHASE1:Mm9::chr9:69868058..69868070,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=306 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:69868058..69868070,+ | |||
|description=CAGE_peak_at_chr9:69868058..69868070,+ | |description=CAGE_peak_at_chr9:69868058..69868070,+ | ||
|id=chr9:69868058..69868070,+ | |id=chr9:69868058..69868070,+ | ||
|ontology_enrichment_celltype=CL:0002563!1.76e-17!9;CL:0002251!1.76e-17!9;CL:0000239!2.57e-12!6;CL:0000677!2.57e-12!6;CL:0000212!2.57e-12!6;CL:0000584!2.57e-12!6;CL:0000075!1.92e-10!7;CL:0002076!9.21e-10!15;CL:0000066!1.19e-09!25;CL:0000473!3.51e-07!3;CL:0000627!3.51e-07!3;CL:0000682!3.51e-07!3;CL:0000223!6.92e-07!20;CL:0002250!9.84e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.44e-13,9;CL:0002251,4.44e-13,9;CL:0000682,9.81e-11,3;CL:0000066,1.46e-09,25;CL:0000239,2.29e-09,6;CL:0000677,2.29e-09,6;CL:0000584,2.29e-09,6;CL:0000075,4.85e-08,7;CL:0002076,1.25e-07,15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!6.63e-30!15;UBERON:0005409!7.21e-28!59;UBERON:0001242!5.97e-26!13;UBERON:0000060!5.97e-26!13;UBERON:0001262!5.97e-26!13;UBERON:0004786!5.97e-26!13;UBERON:0000160!3.27e-25!43;UBERON:0003350!1.76e-17!9;UBERON:0004808!1.76e-17!9;UBERON:0001277!1.76e-17!9;UBERON:0004923!3.17e-17!24;UBERON:0000485!5.72e-14!11;UBERON:0001007!1.66e-11!128;UBERON:0001555!1.66e-11!128;UBERON:0007026!1.66e-11!128;UBERON:0004119!3.34e-11!130;UBERON:0000925!3.34e-11!130;UBERON:0006595!3.34e-11!130;UBERON:0004921!8.19e-10!126;UBERON:0004185!8.19e-10!126;UBERON:0000331!5.11e-08!3;UBERON:0002116!5.11e-08!3;UBERON:0001204!5.11e-08!3;UBERON:0001168!5.11e-08!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.39e-31,15;UBERON:0000160,4.53e-29,31;UBERON:0005409,2.87e-26,47;UBERON:0001242,1.78e-25,13;UBERON:0001262,1.78e-25,13;UBERON:0004786,1.78e-25,13;UBERON:0004923,6.63e-19,24;UBERON:0003350,4.44e-13,9;UBERON:0004808,4.44e-13,9;UBERON:0001277,4.44e-13,9;UBERON:0000331,4.28e-12,3;UBERON:0002116,4.28e-12,3;UBERON:0001204,4.28e-12,3;UBERON:0001168,4.28e-12,3;UBERON:0001007,1.08e-10,116;UBERON:0001555,1.08e-10,116;UBERON:0007026,1.08e-10,116;UBERON:0000485,1.32e-10,11;UBERON:0004119,1.93e-10,118;UBERON:0000925,1.93e-10,118;UBERON:0006595,1.93e-10,118;UBERON:0002108,3.58e-09,4;UBERON:0004921,1.40e-08,114;UBERON:0001962,7.01e-08,2;UBERON:0001961,7.01e-08,2;UBERON:0001744,7.01e-08,2;UBERON:0001155,7.59e-08,2;UBERON:0000059,7.59e-08,2 | |||
|phase1_expression=0,1.04692622291808,0.909998478779072,0.60492842261366,1.50268718983904,11.2479112180966,7.2419918584613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71987118748791,2.98232065387321,1.14846392823004,6.46142994238612,2.58565479223067,17.6721780094428,15.8778981748756,8.20402889424627,0,0,0,1.1554064790051,2.65975432573588,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,2.29911349687732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.30418782983798,1.58670339998127,0,0,0,0,0.444756087689741,1.14135375667535,1.89811624617805,0.988193728344065,0.754005626400808,0,0.779856348476481,0,2.80979464837102,4.18196673834171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,17.184071124272,0,0,0,0,0.87345025498471,0.269728692769641,0.41326727862668,12.5642852152334,11.0172727298024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,1.04692622291808,0.909998478779072,0.60492842261366,1.50268718983904,11.2479112180966,7.2419918584613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71987118748791,2.98232065387321,1.14846392823004,6.46142994238612,2.58565479223067,17.6721780094428,15.8778981748756,8.20402889424627,0,0,0,1.1554064790051,2.65975432573588,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,2.29911349687732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.30418782983798,1.58670339998127,0,0,0,0,0.444756087689741,1.14135375667535,1.89811624617805,0.988193728344065,0.754005626400808,0,0.779856348476481,0,2.80979464837102,4.18196673834171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,17.184071124272,0,0,0,0,0.87345025498471,0.269728692769641,0.41326727862668,12.5642852152334,11.0172727298024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr9:69868058..69868070,+ | |short_description=p@chr9:69868058..69868070,+ | ||
}} | }} |
Latest revision as of 13:27, 5 August 2015
Short description: | p@chr9:69868058..69868070, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:69868058..69868070, + |
Coexpression cluster: | MCL_coexpression_mm9:306 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.44e-13 | 9 |
epithelial cell of alimentary canal | 4.44e-13 | 9 |
M cell of gut | 9.81e-11 | 3 |
epithelial cell | 1.46e-09 | 25 |
brush border epithelial cell | 2.29e-09 | 6 |
gut absorptive cell | 2.29e-09 | 6 |
enterocyte | 2.29e-09 | 6 |
columnar/cuboidal epithelial cell | 4.85e-08 | 7 |
endo-epithelial cell | 1.25e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.39e-31 | 15 |
intestine | 4.53e-29 | 31 |
gastrointestinal system | 2.87e-26 | 47 |
intestinal mucosa | 1.78e-25 | 13 |
wall of intestine | 1.78e-25 | 13 |
gastrointestinal system mucosa | 1.78e-25 | 13 |
organ component layer | 6.63e-19 | 24 |
epithelium of mucosa | 4.44e-13 | 9 |
gastrointestinal system epithelium | 4.44e-13 | 9 |
intestinal epithelium | 4.44e-13 | 9 |
ileal mucosa | 4.28e-12 | 3 |
ileum | 4.28e-12 | 3 |
mucosa of small intestine | 4.28e-12 | 3 |
wall of small intestine | 4.28e-12 | 3 |
digestive system | 1.08e-10 | 116 |
digestive tract | 1.08e-10 | 116 |
primitive gut | 1.08e-10 | 116 |
simple columnar epithelium | 1.32e-10 | 11 |
endoderm-derived structure | 1.93e-10 | 118 |
endoderm | 1.93e-10 | 118 |
presumptive endoderm | 1.93e-10 | 118 |
small intestine | 3.58e-09 | 4 |
subdivision of digestive tract | 1.40e-08 | 114 |
gut-associated lymphoid tissue | 7.01e-08 | 2 |
mucosa-associated lymphoid tissue | 7.01e-08 | 2 |
lymphoid tissue | 7.01e-08 | 2 |
colon | 7.59e-08 | 2 |
large intestine | 7.59e-08 | 2 |