FFCP PHASE1:Mm9::chr10:34203436..34203450,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14302|HGNC=|MCL_coexpression_id=12|UniProt=Q922K9,Q8BPC1|association_with_transcript=230bp_to_ENSMUST00000170771,NM_001159544,uc007eva.2,uc007evb.2_5end|description=CAGE_peak_5_at_Frk_5end|id=chr10:34203436..34203450,+|ontology_enrichment_celltype=CL:0002563!8.90e-07!9;CL:0002251!8.90e-07!9|ontology_enrichment_celltype_v019_2=CL:0000239,9.28e-10,6;CL:0000677,9.28e-10,6;CL:0000584,9.28e-10,6;CL:0000682,8.38e-09,3;CL:0002563,8.50e-09,9;CL:0002251,8.50e-09,9;CL:0000075,2.60e-08,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.45e-14!43;UBERON:0005409!3.38e-14!59;UBERON:0000344!1.26e-11!15;UBERON:0001242!3.86e-10!13;UBERON:0000060!3.86e-10!13;UBERON:0001262!3.86e-10!13;UBERON:0004786!3.86e-10!13;UBERON:0001008!3.86e-10!17;UBERON:0006554!1.05e-09!16;UBERON:0002113!2.08e-09!14;UBERON:0003918!2.08e-09!14;UBERON:0005095!2.08e-09!14;UBERON:0007687!2.08e-09!14;UBERON:0000485!4.03e-07!11;UBERON:0003350!8.90e-07!9;UBERON:0004808!8.90e-07!9;UBERON:0001277!8.90e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.04e-23,31;UBERON:0000344,2.01e-21,15;UBERON:0001242,2.22e-17,13;UBERON:0001262,2.22e-17,13;UBERON:0004786,2.22e-17,13;UBERON:0005409,1.08e-15,47;UBERON:0004923,2.31e-12,24;UBERON:0002113,1.36e-11,14;UBERON:0003918,1.36e-11,14;UBERON:0011143,1.36e-11,14;UBERON:0005095,1.36e-11,14;UBERON:0007687,1.36e-11,14;UBERON:0002108,8.56e-11,4;UBERON:0000331,7.91e-09,3;UBERON:0002116,7.91e-09,3;UBERON:0001204,7.91e-09,3;UBERON:0001168,7.91e-09,3;UBERON:0003350,8.50e-09,9;UBERON:0004808,8.50e-09,9;UBERON:0001277,8.50e-09,9;UBERON:0006554,1.17e-08,18;UBERON:0001008,4.05e-08,19;UBERON:0000489,3.39e-07,21;UBERON:0000485,4.52e-07,11|phase1_expression=0.320297694209588,2.44282785347553,1.81999695755814,2.11724947914781,1.00179145989269,1.34303417529512,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27993938234725,2.75291137280604,3.44539178469012,3.4460959692726,3.878482188346,3.80046838912748,2.52030129759931,4.43461021310609,0,0,0,0.866554859253824,1.16364251750945,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0,0.367093504323363,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.506719730950197,0,1.1418387971906,0,0.148442139064825,0.173485326766136,0,0,0,0.470354828542819,0.502666365318702,0,0,0,0.161766849947409,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0.916554274652847,0.124406970610093,1.0108910337347,0.420883711772948,0.130120442962704,0.229902104433473,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0.351902248327898,0,0,0.696504333044333,0.411564272815887,0.995171334092466,0,0,0,0,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0.465067889500816,0,0,0.329119699826961,0.164167464079095,0.0810688095458557,0,0.219550115291051,0.134206418760372,0,0,4.29544417878937,1.32225283331772,0,0.464473343720877,0.515469845288373,0.80673409849337,1.33426826306922,0.190225626112559,2.37264530772256,1.15289268306808,0.754005626400808,0.397912944082302,0.19496408711912,1.79763881730844,1.51296634912286,1.1948476395262,0.758671603812327,1.25673363870702,2.25415471346161,1.62921062276251,1.35766741017338,0.771494018793504,2.08680572510049,1.03327103585722,1.72698600625512,0.987177311374404,0,0,0,0,0.202860121388503,0,0.25462585178142,0,0,0,0,0,0,0,0,0.482443521363367,0.184753190166605,0.189491411770485,0.325929952884052,0,0.234690248288502,0.167506257441816,0.476087281772027,0.390267295715598,0,0,0.159454768657487,0,0,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0.238968797952552,0,0,0,0,0.790575555893047,0,0.141940085208269,0.178065603667255,0.162886959353576,0.164970122972535,0,0.728341908464944,0.604647113929502,0.943025398779491,0,0.307435147943927,0.258428293168221,0,1.42598951353889,0,0,0,0.680879211507576,0,0.258717367565509,0.428674070063185,0.354680467284547,0.356737635204141,0.164549020602121,0,0.704015124191131,0.21183207086382,0.441056796109924,0.16488625294148,0,0.180938774784468,0,0.164140899745061,1.45740418314925,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0.474503990371703,0.406638934253697,0.432021363287205,0.836353184057875,0.655087691238533,0.134864346384821,0.0826534557253359,0.26175594198403,1.03691978633434,0.621339313086926,0,1.64468200648377,1.32366792365678,0.194451188344048,0.904118764344118,0.675824501963113,0.821500670520278,0.5208175393758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,1.46521299413812,0.643105137237198,1.00314420807073,0,0.460325236507177,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0.206035057238894,0,0.252697211763798,0.50695859978048,0.188626341386076,0,0.192075457214608,0.229741875822453,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0.145346416632329,0,0.25384382367503,0.182927972872773,0,0.271608227691724,0,0.237270036248348,0.197008964751127,0,0.464810523557898,0.192906610981141,0.249810577937946,0,0,0,0,0|short_description=p5@Frk}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14302 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q922K9,uniprot:Q8BPC1 | |||
|association_with_transcript=230bp_to_ENSMUST00000170771,NM_001159544,uc007eva.2,uc007evb.2_5end | |||
|cluster_id=chr10:34203436..34203450,+ | |||
|description=CAGE_peak_5_at_Frk_5end | |||
|id=chr10:34203436..34203450,+ | |||
|ontology_enrichment_celltype=CL:0002563!8.90e-07!9;CL:0002251!8.90e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,9.28e-10,6;CL:0000677,9.28e-10,6;CL:0000584,9.28e-10,6;CL:0000682,8.38e-09,3;CL:0002563,8.50e-09,9;CL:0002251,8.50e-09,9;CL:0000075,2.60e-08,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.45e-14!43;UBERON:0005409!3.38e-14!59;UBERON:0000344!1.26e-11!15;UBERON:0001242!3.86e-10!13;UBERON:0000060!3.86e-10!13;UBERON:0001262!3.86e-10!13;UBERON:0004786!3.86e-10!13;UBERON:0001008!3.86e-10!17;UBERON:0006554!1.05e-09!16;UBERON:0002113!2.08e-09!14;UBERON:0003918!2.08e-09!14;UBERON:0005095!2.08e-09!14;UBERON:0007687!2.08e-09!14;UBERON:0000485!4.03e-07!11;UBERON:0003350!8.90e-07!9;UBERON:0004808!8.90e-07!9;UBERON:0001277!8.90e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.04e-23,31;UBERON:0000344,2.01e-21,15;UBERON:0001242,2.22e-17,13;UBERON:0001262,2.22e-17,13;UBERON:0004786,2.22e-17,13;UBERON:0005409,1.08e-15,47;UBERON:0004923,2.31e-12,24;UBERON:0002113,1.36e-11,14;UBERON:0003918,1.36e-11,14;UBERON:0011143,1.36e-11,14;UBERON:0005095,1.36e-11,14;UBERON:0007687,1.36e-11,14;UBERON:0002108,8.56e-11,4;UBERON:0000331,7.91e-09,3;UBERON:0002116,7.91e-09,3;UBERON:0001204,7.91e-09,3;UBERON:0001168,7.91e-09,3;UBERON:0003350,8.50e-09,9;UBERON:0004808,8.50e-09,9;UBERON:0001277,8.50e-09,9;UBERON:0006554,1.17e-08,18;UBERON:0001008,4.05e-08,19;UBERON:0000489,3.39e-07,21;UBERON:0000485,4.52e-07,11 | |||
|phase1_expression=0.320297694209588,2.44282785347553,1.81999695755814,2.11724947914781,1.00179145989269,1.34303417529512,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27993938234725,2.75291137280604,3.44539178469012,3.4460959692726,3.878482188346,3.80046838912748,2.52030129759931,4.43461021310609,0,0,0,0.866554859253824,1.16364251750945,0.408338712524738,0,0,0,0,0,0,0.125896817975577,0,0.367093504323363,0,0,0,0,0,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.506719730950197,0,1.1418387971906,0,0.148442139064825,0.173485326766136,0,0,0,0.470354828542819,0.502666365318702,0,0,0,0.161766849947409,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0.916554274652847,0.124406970610093,1.0108910337347,0.420883711772948,0.130120442962704,0.229902104433473,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0.351902248327898,0,0,0.696504333044333,0.411564272815887,0.995171334092466,0,0,0,0,0,0.180062061461015,0,0.196764231747404,0.308534225774757,0.465067889500816,0,0,0.329119699826961,0.164167464079095,0.0810688095458557,0,0.219550115291051,0.134206418760372,0,0,4.29544417878937,1.32225283331772,0,0.464473343720877,0.515469845288373,0.80673409849337,1.33426826306922,0.190225626112559,2.37264530772256,1.15289268306808,0.754005626400808,0.397912944082302,0.19496408711912,1.79763881730844,1.51296634912286,1.1948476395262,0.758671603812327,1.25673363870702,2.25415471346161,1.62921062276251,1.35766741017338,0.771494018793504,2.08680572510049,1.03327103585722,1.72698600625512,0.987177311374404,0,0,0,0,0.202860121388503,0,0.25462585178142,0,0,0,0,0,0,0,0,0.482443521363367,0.184753190166605,0.189491411770485,0.325929952884052,0,0.234690248288502,0.167506257441816,0.476087281772027,0.390267295715598,0,0,0.159454768657487,0,0,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0.238968797952552,0,0,0,0,0.790575555893047,0,0.141940085208269,0.178065603667255,0.162886959353576,0.164970122972535,0,0.728341908464944,0.604647113929502,0.943025398779491,0,0.307435147943927,0.258428293168221,0,1.42598951353889,0,0,0,0.680879211507576,0,0.258717367565509,0.428674070063185,0.354680467284547,0.356737635204141,0.164549020602121,0,0.704015124191131,0.21183207086382,0.441056796109924,0.16488625294148,0,0.180938774784468,0,0.164140899745061,1.45740418314925,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0.474503990371703,0.406638934253697,0.432021363287205,0.836353184057875,0.655087691238533,0.134864346384821,0.0826534557253359,0.26175594198403,1.03691978633434,0.621339313086926,0,1.64468200648377,1.32366792365678,0.194451188344048,0.904118764344118,0.675824501963113,0.821500670520278,0.5208175393758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,1.46521299413812,0.643105137237198,1.00314420807073,0,0.460325236507177,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0.206035057238894,0,0.252697211763798,0.50695859978048,0.188626341386076,0,0.192075457214608,0.229741875822453,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0.145346416632329,0,0.25384382367503,0.182927972872773,0,0.271608227691724,0,0.237270036248348,0.197008964751127,0,0.464810523557898,0.192906610981141,0.249810577937946,0,0,0,0,0 | |||
|short_description=p5@Frk | |||
}} |
Revision as of 08:08, 4 August 2015
Short description: | p5@Frk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Frk_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 230bp_to_ENSMUST00000170771, NM_001159544, uc007eva.2, uc007evb.2_5end |
EntrezGene: | 14302 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 9.28e-10 | 6 |
gut absorptive cell | 9.28e-10 | 6 |
enterocyte | 9.28e-10 | 6 |
M cell of gut | 8.38e-09 | 3 |
intestinal epithelial cell | 8.50e-09 | 9 |
epithelial cell of alimentary canal | 8.50e-09 | 9 |
columnar/cuboidal epithelial cell | 2.60e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.04e-23 | 31 |
mucosa | 2.01e-21 | 15 |
intestinal mucosa | 2.22e-17 | 13 |
wall of intestine | 2.22e-17 | 13 |
gastrointestinal system mucosa | 2.22e-17 | 13 |
gastrointestinal system | 1.08e-15 | 47 |
organ component layer | 2.31e-12 | 24 |
kidney | 1.36e-11 | 14 |
kidney mesenchyme | 1.36e-11 | 14 |
upper urinary tract | 1.36e-11 | 14 |
kidney rudiment | 1.36e-11 | 14 |
kidney field | 1.36e-11 | 14 |
small intestine | 8.56e-11 | 4 |
ileal mucosa | 7.91e-09 | 3 |
ileum | 7.91e-09 | 3 |
mucosa of small intestine | 7.91e-09 | 3 |
wall of small intestine | 7.91e-09 | 3 |
epithelium of mucosa | 8.50e-09 | 9 |
gastrointestinal system epithelium | 8.50e-09 | 9 |
intestinal epithelium | 8.50e-09 | 9 |
urinary system structure | 1.17e-08 | 18 |
renal system | 4.05e-08 | 19 |
cavitated compound organ | 3.39e-07 | 21 |
simple columnar epithelium | 4.52e-07 | 11 |