FFCP PHASE1:Hg19::chr2:40944260..40944288,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:40944260..40944288,+ | |||
|coexpression_cluster_id=C4227 | |||
|description=CAGE_peak_at_chr2:40944260..40944288,+ | |description=CAGE_peak_at_chr2:40944260..40944288,+ | ||
|id=chr2:40944260..40944288,+ | |id=chr2:40944260..40944288,+ | ||
|ontology_enrichment_celltype=CL:0002620!5.99e-17!23;CL:0000057!4.50e-11!75;CL:0000055!1.96e-08!180 | |ontology_enrichment_celltype=CL:0002620!5.99e-17!23;CL:0000057!4.50e-11!75;CL:0000055!1.96e-08!180 | ||
|ontology_enrichment_celltype_v019=CL:0002573;2.20e-16;2!CL:0002620;1.14e-12;23!CL:0001014;3.09e-07;2!CL:0001016;3.09e-07;2!CL:0000054;4.29e-07;2!CL:0000137;4.29e-07;2!CL:0000092;4.29e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,4.11e-16,2;CL:0002620,1.10e-12,23;CL:0000062,2.14e-10,11;CL:0000375,2.14e-10,11;CL:0000335,2.14e-10,11;CL:0001014,3.09e-07,2;CL:0001016,3.09e-07,2;CL:0000054,3.28e-07,2;CL:0000137,3.28e-07,2;CL:0000092,3.28e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000335;2.47e-10;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2513;6.42e-13;1!DOID:201;1.17e-08;6!DOID:0060100;1.17e-08;6!DOID:4231;4.29e-07;2!DOID:3451;4.29e-07;2!DOID:4159;4.29e-07;2!DOID:0060122;4.29e-07;2!DOID:200;4.29e-07;2!DOID:4305;4.29e-07;2!DOID:1907;4.29e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,6.82e-13,1;DOID:201,8.91e-09,6;DOID:0060100,8.91e-09,6;DOID:200,3.28e-07,2;DOID:4305,3.28e-07,2;DOID:4231,3.70e-07,2;DOID:1907,3.70e-07,2;DOID:3451,4.42e-07,2;DOID:4159,4.42e-07,2;DOID:0060122,4.42e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!3.25e-17!40;UBERON:0002199!9.22e-15!45;UBERON:0002416!9.22e-15!45;UBERON:0003102!7.95e-13!95;UBERON:0000014!7.68e-07!4 | |ontology_enrichment_uberon=UBERON:0002097!3.25e-17!40;UBERON:0002199!9.22e-15!45;UBERON:0002416!9.22e-15!45;UBERON:0003102!7.95e-13!95;UBERON:0000014!7.68e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.06e-10;41!UBERON:0002199;1.06e-07;46!UBERON:0002416;1.06e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.60e-13,41;UBERON:0002199,8.42e-12,46;UBERON:0002416,8.42e-12,46 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.89694817844431,0.85422955527427,0,0,0.103052529238439,6.95629458123199,4.65292140828975,0.337552664482532,0.0974370051611986,0.252433774244115,0.552299391853796,0,1.42003837006646,1.61203357164224,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535286966391485,0.315404830067869,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0,0.248107807818777,1.84154367945675,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.61479380592606,11.5513299888823,0,0,0,0,0,0,0.275673144969061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,1.55519793830904,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0.979762080328227,0,0,20.4465626142506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.20049976393677,0,0,0,0,0,0,0.453411851024545,0,0,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,1.70254786070051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90691047733584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0.171488009437418,0,0,0.236387681767936,0.111231401892069,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0.17071847709395,0.691259661814092,0,1.18332000730565,1.02256085710989,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.89694817844431,0.85422955527427,0,0,0.103052529238439,6.95629458123199,4.65292140828975,0.337552664482532,0.0974370051611986,0.252433774244115,0.552299391853796,0,1.42003837006646,1.61203357164224,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535286966391485,0.315404830067869,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0,0.248107807818777,1.84154367945675,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.61479380592606,11.5513299888823,0,0,0,0,0,0,0.275673144969061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,1.55519793830904,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0.979762080328227,0,0,20.4465626142506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.20049976393677,0,0,0,0,0,0,0.453411851024545,0,0,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,1.70254786070051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90691047733584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0.171488009437418,0,0,0.236387681767936,0.111231401892069,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0.17071847709395,0.691259661814092,0,1.18332000730565,1.02256085710989,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:40944260..40944288,+ | |short_description=p@chr2:40944260..40944288,+ | ||
}} | }} |
Latest revision as of 10:08, 29 July 2015
Short description: | p@chr2:40944260..40944288, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:40944260..40944288, + |
Coexpression cluster: | C4227_liposarcoma_Saos2_Fibroblast_mesenchymal_myxofibrosarcoma_immature_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 4.11e-16 | 2 |
skin fibroblast | 1.10e-12 | 23 |
osteoblast | 2.14e-10 | 11 |
osteoprogenitor cell | 2.14e-10 | 11 |
mesenchyme condensation cell | 2.14e-10 | 11 |
CD1a-positive Langerhans cell | 3.09e-07 | 2 |
immature CD1a-positive Langerhans cell | 3.09e-07 | 2 |
bone matrix secreting cell | 3.28e-07 | 2 |
osteocyte | 3.28e-07 | 2 |
osteoclast | 3.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.60e-13 | 41 |
integument | 8.42e-12 | 46 |
integumental system | 8.42e-12 | 46 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 6.82e-13 | 1 |
connective tissue cancer | 8.91e-09 | 6 |
musculoskeletal system cancer | 8.91e-09 | 6 |
giant cell tumor | 3.28e-07 | 2 |
bone giant cell tumor | 3.28e-07 | 2 |
histiocytoma | 3.70e-07 | 2 |
malignant fibroxanthoma | 3.70e-07 | 2 |
skin carcinoma | 4.42e-07 | 2 |
skin cancer | 4.42e-07 | 2 |
integumentary system cancer | 4.42e-07 | 2 |