FFCP PHASE1:Hg19::chr20:30279892..30279908,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:30279892..30279908,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_at_chr20:30279892..30279908,- | |description=CAGE_peak_at_chr20:30279892..30279908,- | ||
|id=chr20:30279892..30279908,- | |id=chr20:30279892..30279908,- | ||
|ontology_enrichment_celltype=CL:1000507!6.66e-07!12;CL:1000494!6.66e-07!12;CL:0000239!7.07e-07!3;CL:1000615!7.07e-07!3;CL:0002306!7.07e-07!3 | |ontology_enrichment_celltype=CL:1000507!6.66e-07!12;CL:1000494!6.66e-07!12;CL:0000239!7.07e-07!3;CL:1000615!7.07e-07!3;CL:0002306!7.07e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000764;1.51e-09;2!CL:0000558;1.51e-09;2!CL:0000307;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.57e-09,2;CL:0000765,1.57e-09,2;CL:0000050,1.57e-09,2;CL:0000038,1.57e-09,2;CL:0000558,1.57e-09,2;CL:0000547,1.57e-09,2;CL:0000549,1.57e-09,2;CL:0000550,1.57e-09,2;CL:0000552,1.57e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.51e-09;2!CL:0000377;8.86e-07;3 | |||
|ontology_enrichment_disease=DOID:2531!9.89e-08!51;DOID:0060083!9.89e-08!51;DOID:0050686!4.51e-07!137;DOID:0060058!8.26e-07!10 | |ontology_enrichment_disease=DOID:2531!9.89e-08!51;DOID:0060083!9.89e-08!51;DOID:0050686!4.51e-07!137;DOID:0060058!8.26e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:3111;4.44e-18;1!DOID:3603;4.44e-18;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,4.44e-18,1;DOID:3603,4.44e-18,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.49e-12!7;UBERON:0002370!1.29e-08!4;UBERON:0005058!1.29e-08!4;UBERON:0009113!1.29e-08!4;UBERON:0003295!1.29e-08!4;UBERON:0005562!1.29e-08!4;UBERON:0003887!2.78e-08!21;UBERON:0009773!6.66e-07!12;UBERON:0001231!6.66e-07!12;UBERON:0004810!6.66e-07!12;UBERON:0006853!7.07e-07!3;UBERON:0007685!7.07e-07!3;UBERON:0004134!7.07e-07!3 | |ontology_enrichment_uberon=UBERON:0004177!1.49e-12!7;UBERON:0002370!1.29e-08!4;UBERON:0005058!1.29e-08!4;UBERON:0009113!1.29e-08!4;UBERON:0003295!1.29e-08!4;UBERON:0005562!1.29e-08!4;UBERON:0003887!2.78e-08!21;UBERON:0009773!6.66e-07!12;UBERON:0001231!6.66e-07!12;UBERON:0004810!6.66e-07!12;UBERON:0006853!7.07e-07!3;UBERON:0007685!7.07e-07!3;UBERON:0004134!7.07e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.11e-34;2!UBERON:0005058;1.11e-34;2!UBERON:0009113;1.11e-34;2!UBERON:0004177;1.61e-14;5!UBERON:0005057;1.61e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.79e-18,4;UBERON:0005058,6.79e-18,4;UBERON:0009113,6.79e-18,4;UBERON:0003295,6.79e-18,4;UBERON:0005562,6.79e-18,4;UBERON:0003351,2.91e-12,6;UBERON:0004177,1.21e-10,7;UBERON:0005057,1.21e-10,7;UBERON:0000974,1.02e-07,10;UBERON:0003408,1.02e-07,10;UBERON:0001042,1.02e-07,10;UBERON:0009145,1.02e-07,10;UBERON:0006562,4.30e-07,11;UBERON:0009722,4.30e-07,11;UBERON:0007690,4.30e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.387336002901508,0.426507697462265,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97316789473185,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0.112085143993527,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0.519254429183621,0,0,0.200506470303285,0,0,0,0,0,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0.831076008928724,0.447749509444357,1.31555925987561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.371606350251437,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0.492339221844278,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0,0.189753732724185,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0.407712618220842,0.836822770498666,0,0,0,0.136905378891993,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,1.97611631897944,0.60896299190448,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0.691743174681154,0,0,0,0.235265819698172,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0.857766365499703,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74705760366215,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.0999411559249289,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,10.592581213105,10.1802531445207,0.112131862580613,0,0,0,0,0.202056159043763,0,0,0.0814032686109745,0,0,0,0,0,0,0,1.61019034872821,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.387336002901508,0.426507697462265,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97316789473185,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0.112085143993527,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0.519254429183621,0,0,0.200506470303285,0,0,0,0,0,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0.831076008928724,0.447749509444357,1.31555925987561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.371606350251437,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0.492339221844278,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0,0.189753732724185,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547364367646998,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0.694238953340524,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0.391102765469606,0,0,0,0,0,0,0,0,0,0.407712618220842,0.836822770498666,0,0,0,0.136905378891993,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,1.97611631897944,0.60896299190448,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0.691743174681154,0,0,0,0.235265819698172,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0.857766365499703,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74705760366215,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.0999411559249289,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,10.592581213105,10.1802531445207,0.112131862580613,0,0,0,0,0.202056159043763,0,0,0.0814032686109745,0,0,0,0,0,0,0,1.61019034872821,0.641136984606466 | ||
|short_description=p@chr20:30279892..30279908,- | |short_description=p@chr20:30279892..30279908,- | ||
}} | }} |
Latest revision as of 12:50, 28 July 2015
Short description: | p@chr20:30279892..30279908, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:30279892..30279908, - |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.57e-09 | 2 |
erythroblast | 1.57e-09 | 2 |
megakaryocyte-erythroid progenitor cell | 1.57e-09 | 2 |
erythroid progenitor cell | 1.57e-09 | 2 |
reticulocyte | 1.57e-09 | 2 |
proerythroblast | 1.57e-09 | 2 |
basophilic erythroblast | 1.57e-09 | 2 |
polychromatophilic erythroblast | 1.57e-09 | 2 |
orthochromatic erythroblast | 1.57e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.79e-18 | 4 |
hemolymphoid system gland | 6.79e-18 | 4 |
thymic region | 6.79e-18 | 4 |
pharyngeal gland | 6.79e-18 | 4 |
thymus primordium | 6.79e-18 | 4 |
pharyngeal epithelium | 2.91e-12 | 6 |
hemopoietic organ | 1.21e-10 | 7 |
immune organ | 1.21e-10 | 7 |
neck | 1.02e-07 | 10 |
gland of gut | 1.02e-07 | 10 |
chordate pharynx | 1.02e-07 | 10 |
pharyngeal region of foregut | 1.02e-07 | 10 |
pharynx | 4.30e-07 | 11 |
entire pharyngeal arch endoderm | 4.30e-07 | 11 |
early pharyngeal endoderm | 4.30e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 4.44e-18 | 1 |
mucinous cystadenocarcinoma | 4.44e-18 | 1 |