FFCP PHASE1:Hg19::chr1:16536724..16536739,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:16536724..16536739,- | |||
|description=CAGE_peak_at_chr1:16536724..16536739,- | |||
|id=chr1:16536724..16536739,- | |||
|ontology_enrichment_celltype=CL:0002564!2.17e-08!3;CL:0000128!1.44e-07!7;CL:0000126!1.44e-07!7;CL:0000127!1.44e-07!7;CL:0002453!1.44e-07!7;CL:0002603!1.60e-07!3;CL:0000064!1.95e-07!3;CL:0005012!1.95e-07!3;CL:0000067!1.95e-07!3;CL:0002304!1.95e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002564;6.47e-17;3!CL:0000062;2.87e-12;9!CL:0000138;7.92e-09;6!CL:0002588;4.69e-07;2!CL:0002602;4.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,7.90e-17,3;CL:0000062,3.79e-10,11;CL:0000375,3.79e-10,11;CL:0000335,3.79e-10,11;CL:0000058,7.33e-09,6;CL:0000138,7.33e-09,6;CL:0002602,4.42e-07,2;CL:0002588,4.98e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003099;1.61e-13;1!UBERON:0003852;1.61e-13;1!CL:0000335;3.85e-10;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;4.69e-07;2!DOID:3307;4.69e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,4.17e-07,2;DOID:3910,5.60e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002090!5.84e-10!6;UBERON:0000488!3.87e-09!4;UBERON:0000033!4.36e-09!123;UBERON:0000153!4.54e-09!129;UBERON:0007811!4.54e-09!129;UBERON:0002200!6.15e-09!11;UBERON:0006876!6.15e-09!11;UBERON:0002242!2.17e-08!3;UBERON:0003068!2.17e-08!3;UBERON:0002328!2.17e-08!3;UBERON:0004880!2.17e-08!3;UBERON:0000075!6.61e-08!13;UBERON:0005944!6.61e-08!13;UBERON:0004288!6.61e-08!13;UBERON:0003089!6.61e-08!13;UBERON:0003075!7.36e-08!86;UBERON:0007284!7.36e-08!86;UBERON:0001778!1.95e-07!3;UBERON:0001775!1.95e-07!3;UBERON:0000365!2.40e-07!5;UBERON:0002346!2.85e-07!90;UBERON:0007196!6.15e-07!14;UBERON:0001558!6.15e-07!14;UBERON:0007625!6.41e-07!11;UBERON:0005743!9.49e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;8.10e-22;5!UBERON:0002216;8.10e-22;5!UBERON:0011134;8.10e-22;5!UBERON:0002209;8.10e-22;5!UBERON:0002213;8.10e-22;5!UBERON:0007844;8.10e-22;5!UBERON:0011138;8.10e-22;5!UBERON:0001130;8.10e-22;5!UBERON:0001066;8.10e-22;5!UBERON:0001468;8.10e-22;5!UBERON:0002242;6.47e-17;3!UBERON:0004765;6.43e-16;26!UBERON:0004905;7.03e-14;8!UBERON:0000982;7.03e-14;8!UBERON:0004770;7.03e-14;8!UBERON:0005705;1.61e-13;1!UBERON:0008193;1.61e-13;1!UBERON:0010912;1.61e-13;1!UBERON:0002514;1.61e-13;1!UBERON:0003457;1.61e-13;1!UBERON:0008907;1.61e-13;1!UBERON:0008001;1.61e-13;1!UBERON:0007213;1.61e-13;1!UBERON:0009891;1.61e-13;1!UBERON:0007914;1.61e-13;1!UBERON:0007375;1.61e-13;1!UBERON:0003323;1.61e-13;1!UBERON:0010258;1.61e-13;1!UBERON:0005253;1.61e-13;1!UBERON:0007842;1.61e-13;1!UBERON:0002397;1.61e-13;1!UBERON:0003113;1.61e-13;1!UBERON:0003277;1.61e-13;1!UBERON:0001709;1.61e-13;1!UBERON:0002244;1.61e-13;1!UBERON:0005620;1.61e-13;1!UBERON:0010364;1.61e-13;1!UBERON:0004288;1.61e-13;1!UBERON:0000075;3.80e-12;16!UBERON:0001434;4.08e-10;36!UBERON:0003104;7.68e-08;7!UBERON:0009142;7.68e-08;7!UBERON:0004089;2.15e-07;2!UBERON:0004903;4.69e-07;2!UBERON:0006444;4.69e-07;2!UBERON:0001995;4.69e-07;2!UBERON:0004715;4.69e-07;2!UBERON:0002173;4.69e-07;2!UBERON:0002186;4.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,9.01e-22,5;UBERON:0002216,9.01e-22,5;UBERON:0011134,9.01e-22,5;UBERON:0002209,9.01e-22,5;UBERON:0002213,9.01e-22,5;UBERON:0005856,9.01e-22,5;UBERON:0005866,9.01e-22,5;UBERON:0005863,9.01e-22,5;UBERON:0007844,9.01e-22,5;UBERON:0011138,9.01e-22,5;UBERON:0001130,9.01e-22,5;UBERON:0001066,9.01e-22,5;UBERON:0001468,9.01e-22,5;UBERON:0002242,7.90e-17,3;UBERON:0003068,7.90e-17,3;UBERON:0002328,7.90e-17,3;UBERON:0004880,7.90e-17,3;UBERON:0004905,7.51e-14,8;UBERON:0000982,7.51e-14,8;UBERON:0004770,7.51e-14,8;UBERON:0005705,1.61e-13,1;UBERON:0008193,1.61e-13,1;UBERON:0010912,1.61e-13,1;UBERON:0002514,1.61e-13,1;UBERON:0003457,1.61e-13,1;UBERON:0008907,1.61e-13,1;UBERON:0008001,1.61e-13,1;UBERON:0007213,1.61e-13,1;UBERON:0009891,1.61e-13,1;UBERON:0007914,1.61e-13,1;UBERON:0009292,1.61e-13,1;UBERON:0003099,1.61e-13,1;UBERON:0007375,1.61e-13,1;UBERON:0003323,1.61e-13,1;UBERON:0010258,1.61e-13,1;UBERON:0007842,1.61e-13,1;UBERON:0009494,1.61e-13,1;UBERON:0010042,1.61e-13,1;UBERON:0010045,1.61e-13,1;UBERON:0010259,1.61e-13,1;UBERON:0010359,1.61e-13,1;UBERON:0009526,1.61e-13,1;UBERON:0002397,1.61e-13,1;UBERON:0003113,1.61e-13,1;UBERON:0003277,1.61e-13,1;UBERON:0001709,1.61e-13,1;UBERON:0004066,1.61e-13,1;UBERON:0002244,1.61e-13,1;UBERON:0005620,1.61e-13,1;UBERON:0004362,1.61e-13,1;UBERON:0010364,1.61e-13,1;UBERON:0010046,1.61e-13,1;UBERON:0005868,1.61e-13,1;UBERON:0007238,1.61e-13,1;UBERON:0004288,1.61e-13,1;UBERON:0004068,1.61e-13,1;UBERON:0010334,1.61e-13,1;UBERON:0003852,1.61e-13,1;UBERON:0010253,1.61e-13,1;UBERON:0000075,3.97e-12,16;UBERON:0011137,2.81e-08,14;UBERON:0005253,2.15e-07,2;UBERON:0004089,2.15e-07,2;UBERON:0006444,4.42e-07,2;UBERON:0001995,4.42e-07,2;UBERON:0004715,4.42e-07,2;UBERON:0004903,5.60e-07,2;UBERON:0002173,5.60e-07,2;UBERON:0002186,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.79120467188971,0,0,0.990130823680373,1.32558950291166,0,0,0,0,0.246242116153576,0.204000691244253,2.19418305034661,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,2.3858578411533,2.91980922181582,0.283604451492204,0.443458794925128,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0.491337269247072,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.462942225792648,0,0,0,2.55046890945169,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0.285826432630578,0.224262168690721,0,0.22001485746285,0,0,0,0,0,1.28603687131071,0,0.266422179016099,0,3.25572963234866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.670065061337395,0,0,0,0,0.49076596687656,4.00136416847742,2.17012018959788,0,0,0,0,1.20378439891088,0,0,0.664225598535437,3.13427586520895,0,0,0.686286847621712,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0.290012154876366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0.573645408816206,1.27723753317057,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.64281509905094,0,0.128458450192919,0,0,0.205116364240755,0.252071696221718,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,1.98916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0.371995018166751,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0.162806537221949,0,1.9307228228694,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr1:16536724..16536739,- | |||
}} |
Latest revision as of 23:54, 27 July 2015
Short description: | p@chr1:16536724..16536739, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:16536724..16536739, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 7.90e-17 | 3 |
osteoblast | 3.79e-10 | 11 |
osteoprogenitor cell | 3.79e-10 | 11 |
mesenchyme condensation cell | 3.79e-10 | 11 |
chondroblast | 7.33e-09 | 6 |
chondrocyte | 7.33e-09 | 6 |
annulus pulposus cell | 4.42e-07 | 2 |
smooth muscle cell of the umbilical vein | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
teratoma | 4.17e-07 | 2 |
lung adenocarcinoma | 5.60e-07 | 2 |