FFCP PHASE1:Hg19::chr19:12910789..12910801,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:12910789..12910801,- | |||
|description=CAGE_peak_at_chr19:12910789..12910801,- | |description=CAGE_peak_at_chr19:12910789..12910801,- | ||
|id=chr19:12910789..12910801,- | |id=chr19:12910789..12910801,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000764;1.01e-12;2!CL:0000558;1.01e-12;2!CL:0002188;3.87e-11;5!CL:1000746;4.32e-08;7!CL:1000612;4.32e-08;7!CL:0002553;3.40e-07;1!CL:0002581;3.40e-07;1!CL:0002591;3.40e-07;1 | |ontology_enrichment_celltype_v019=CL:0000764;1.01e-12;2!CL:0000558;1.01e-12;2!CL:0002188;3.87e-11;5!CL:1000746;4.32e-08;7!CL:1000612;4.32e-08;7!CL:0002553;3.40e-07;1!CL:0002581;3.40e-07;1!CL:0002591;3.40e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,2.88e-13,2;CL:0000765,2.88e-13,2;CL:0000050,2.88e-13,2;CL:0000038,2.88e-13,2;CL:0000558,2.88e-13,2;CL:0000547,2.88e-13,2;CL:0000549,2.88e-13,2;CL:0000550,2.88e-13,2;CL:0000552,2.88e-13,2;CL:0002188,2.94e-11,5;CL:1000746,3.56e-08,7;CL:1000612,3.56e-08,7;CL:0002553,1.74e-07,1;CL:0002581,2.23e-07,1;CL:0002591,4.89e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006222;3.40e-07;1 | |ontology_enrichment_development_v019=UBERON:0006222;3.40e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;9.00e-09;3!DOID:127;9.00e-09;3!DOID:0060072;8.82e-07;4 | |ontology_enrichment_disease_v019=DOID:0060084;9.00e-09;3!DOID:127;9.00e-09;3!DOID:0060072;8.82e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.19e-08,3;DOID:127,1.19e-08,3 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000074;4.32e-08;7!UBERON:0001229;4.32e-08;7!UBERON:0007195;3.40e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0000074;4.32e-08;7!UBERON:0001229;4.32e-08;7!UBERON:0007195;3.40e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,3.56e-08,7;UBERON:0000074,3.56e-08,7;UBERON:0001229,3.56e-08,7;UBERON:0001230,3.56e-08,7;UBERON:0003220,3.56e-08,7;UBERON:0005749,3.56e-08,7;UBERON:0004199,3.56e-08,7;UBERON:0004209,3.56e-08,7;UBERON:0004198,3.56e-08,7;UBERON:0005103,3.31e-07,8;UBERON:0000083,3.31e-07,8;UBERON:0009201,3.31e-07,8;UBERON:0006553,3.31e-07,8;UBERON:0003074,3.31e-07,8;UBERON:0003060,3.31e-07,8;UBERON:0007195,5.19e-07,1 | |||
|phase1_expression=0,1.07050261945492,0.140954404095971,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,1.39560233594486,0,0,0.618831764800233,0.331397375727916,0.672325146451775,0,0.730310090387373,0.487932798790507,0,0.204000691244253,0,0.572471974262113,0.684372125364421,0,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,1.47901604066715,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0.25618263945135,0,0.328875809207352,0,0,0,0.267540828089713,2.09071047609954,0.226618685395132,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.263504357079378,0.0654895377488563,0,0,0,0.174129737299267,0,0,0.571994910780128,0,0.198762407366705,0,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0,0,0,0.402829317109147,0,0.488124115096339,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0.140450806702248,0.61246251376468,0.737005903870608,0,0,0,0,0.718618141816238,0.168336113954066,0,0,0.438977620880838,0.919463387397059,0,0.226864366320042,0.179389635688862,0.213557388818567,0,0,0.206105058476878,0.515281080091258,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0.36497735907583,0,0.643240938192885,1.38134921352481,0,0,0.828147600278907,0.337169380156203,0.723033089650446,0.772057809126758,0.435758888184812,0.237270619111097,0.539325232640658,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0,0,0.301586917234893,0.0925884451585296,0,0,0,0.34779121492523,0.117408694235822,0.144366447761074,0.462985512576611,0.570762456703795,0.790204397959275,0,0,0,0.148631162288728,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0.414656231081544,0,0,0.063497894292169,0,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0,0,0,0,0,0.845302752556,0,1.04007436911366,0.514414748524284,0,0.799266537048298,0.142977993658148,0,0,0,0.355391948742546,0,0.904318131178758,0.871533458600294,0.399891964728228,1.2162378064119,0,0,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0.215627574859517,0,0,0,0.773288812777695,0,3.82763250991898,0,0,0,0,0,0.271265023699736,0.207970861530807,0,0.315404830067869,0,0,0,0,0,0.553107505625109,0,0,0.343143423810856,0,0,0,0,0,0.604780586659361,0.248107807818777,0,0,0.128139149255701,0,0,1.48418066444991,0.308419387605311,0.177561725313127,0,0,0.232420756919918,0.120859449591622,0.601519410909855,0.184161977871793,0.114814448164607,0.182091168006717,0.655622074797121,0.451199612907412,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0.170093705276516,0.215915916102139,1.54227252690289,0,0.501689773854853,0.254876273045038,0,0.223874754722178,1.75407901316748,1.5686127061494,0.256450125116389,0,0,0,0,0,0,0.650060246036521,0,0,0.154048617114644,0.460511024178389,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0.192190067365106,0,0,0,0,0,0,0.532306030317022,0,0,0.572499546967965,0,0.316379424718726,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0.975267478179181,0,0,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0.876901770507525,0.578775534266688,0.655894752046633,0,0.30982349809975,0.563391205064483,0,0,0.35667105148125,0,1.05553817648832,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,2.27858874869665,0,0.411362273086194,0,0,1.58625035258854,0.106824071127473,0,0,0.185803175125719,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0.321176150207399,0,0,0,0,0,0,0,0.835218521685727,2.46174797895425,0.540911356951966,0,0,0,0.146508179271894,0.121360521749513,0,0,0,0,0.307160702099232,0.994147647766298,0.140669416410513,0,0.16480387422676,0.63337622438398,0.19924798825107,0.276283915531148,0,0,0.123084805461069,0.311039587661807,0.0898683511473268,0,0,0.0986434056369336,0,1.11136990144637,1.93866549219044,0.371072392647405,0,0.520855522170466,0.349839999984783,0.724999575434793,0,0.508507300585533,0,0,0.291604613383254,0.694499979733169,0,0.361789315876224,0,0,1.18219047581419,0,0,0.139423744278603,0,0,0,0.359030577639089,0,0,0.0915975934018623,0.533034776018635,0,0.31396051279005,0,0.225595660617181,0.392125068635479,0.167821586975843,0,0,0.843992258112108,0,0,0.216388639742091,0,0,1.22206028986725,0,0.247127877893006,0,0.134802265961354,0,1.1713222286267,0.91227394607833,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0.867798691675654,0,0,0.52418000472609,0,0.387025325156341,0.365446585430928,0.821154570532092,0.193978032976839,0.264768380074501,0.90392296312213,0,0,0.0633107959558787,0,0,0,0.19980960958213,0.144090417154106,0,0.514784993585894,0,0,0.471388069233591,0,0,0.203996435272644,0,0,0,0,0,0,0,0.687481272035051,0,0.5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| ||
|short_description=p@chr19:12910789..12910801,- | |short_description=p@chr19:12910789..12910801,- | ||
}} | }} |
Latest revision as of 03:49, 26 July 2015
Short description: | p@chr19:12910789..12910801, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:12910789..12910801, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 2.88e-13 | 2 |
erythroblast | 2.88e-13 | 2 |
megakaryocyte-erythroid progenitor cell | 2.88e-13 | 2 |
erythroid progenitor cell | 2.88e-13 | 2 |
reticulocyte | 2.88e-13 | 2 |
proerythroblast | 2.88e-13 | 2 |
basophilic erythroblast | 2.88e-13 | 2 |
polychromatophilic erythroblast | 2.88e-13 | 2 |
orthochromatic erythroblast | 2.88e-13 | 2 |
glomerular endothelial cell | 2.94e-11 | 5 |
glomerular cell | 3.56e-08 | 7 |
kidney corpuscule cell | 3.56e-08 | 7 |
lung fibroblast | 1.74e-07 | 1 |
perirenal preadipocyte | 2.23e-07 | 1 |
smooth muscle cell of the pulmonary artery | 4.89e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 3.56e-08 | 7 |
renal glomerulus | 3.56e-08 | 7 |
renal corpuscle | 3.56e-08 | 7 |
glomerular capsule | 3.56e-08 | 7 |
metanephric mesenchyme | 3.56e-08 | 7 |
glomerular tuft | 3.56e-08 | 7 |
S-shaped body | 3.56e-08 | 7 |
renal vesicle | 3.56e-08 | 7 |
comma-shaped body | 3.56e-08 | 7 |
mesonephric epithelium | 3.31e-07 | 8 |
mesonephric tubule | 3.31e-07 | 8 |
nephric duct | 3.31e-07 | 8 |
renal duct | 3.31e-07 | 8 |
mesonephric duct | 3.31e-07 | 8 |
pronephric duct | 3.31e-07 | 8 |
stroma of bone marrow | 5.19e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.19e-08 | 3 |
leiomyoma | 1.19e-08 | 3 |