FFCP PHASE1:Hg19::chr17:56033198..56033217,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:56033198..56033217,- | |||
|coexpression_cluster_id=C171 | |coexpression_cluster_id=C171 | ||
|description=CAGE_peak_at_chr17:56033198..56033217,- | |description=CAGE_peak_at_chr17:56033198..56033217,- | ||
|id=chr17:56033198..56033217,- | |id=chr17:56033198..56033217,- | ||
|ontology_enrichment_celltype=CL:0000066!2.92e-08!254 | |ontology_enrichment_celltype=CL:0000066!2.92e-08!254 | ||
|ontology_enrichment_celltype_v019=CL:0000123;3.57e-19;2!CL:0000242;3.57e-19;2!CL:0000239;1.89e-12;3!CL:1000615;1.89e-12;3!CL:0002306;1.89e-12;3!CL:0002553;5.78e-10;1!CL:1000507;2.59e-08;10!CL:1000494;2.59e-08;10!CL:0000312;3.30e-08;5!CL:0002681;5.26e-07;12!CL:0002584;5.26e-07;12!CL:0000240;5.66e-07;6!CL:0000311;5.66e-07;6!CL:0000079;5.66e-07;6!CL:0000237;5.66e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.10e-19,2;CL:0000239,3.56e-12,3;CL:1000615,3.56e-12,3;CL:0002306,3.56e-12,3;CL:0002553,3.71e-10,1;CL:1000507,3.42e-08,10;CL:1000494,3.42e-08,10;CL:0000312,3.48e-08,5;CL:0000240,5.92e-07,6;CL:0000311,5.92e-07,6;CL:0000079,5.92e-07,6;CL:0000237,5.92e-07,6;CL:0000036,5.92e-07,6;CL:0000357,5.92e-07,6;CL:0000114,5.92e-07,6;CL:0002681,6.61e-07,12;CL:0002584,6.61e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000357;5.66e-07;6!CL:0000114;5.66e-07;6 | |||
|ontology_enrichment_disease=DOID:0050687!1.23e-09!143;DOID:305!3.53e-08!106 | |ontology_enrichment_disease=DOID:0050687!1.23e-09!143;DOID:305!3.53e-08!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.98e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0009569!1.94e-09!113;UBERON:0000058!3.53e-09!26;UBERON:0000464!2.94e-08!104;UBERON:0000062!6.43e-08!511;UBERON:0008947!6.43e-08!38;UBERON:0003258!6.43e-08!38;UBERON:0000064!6.70e-08!219;UBERON:0005177!2.08e-07!107;UBERON:0000475!2.42e-07!365;UBERON:0000466!2.81e-07!126;UBERON:0002048!7.91e-07!22;UBERON:0000117!7.91e-07!22;UBERON:0000171!7.91e-07!22;UBERON:0000170!7.91e-07!22;UBERON:0005597!7.91e-07!22;UBERON:0000118!7.91e-07!22;UBERON:0005178!8.39e-07!34;UBERON:0002224!8.39e-07!34 | |ontology_enrichment_uberon=UBERON:0009569!1.94e-09!113;UBERON:0000058!3.53e-09!26;UBERON:0000464!2.94e-08!104;UBERON:0000062!6.43e-08!511;UBERON:0008947!6.43e-08!38;UBERON:0003258!6.43e-08!38;UBERON:0000064!6.70e-08!219;UBERON:0005177!2.08e-07!107;UBERON:0000475!2.42e-07!365;UBERON:0000466!2.81e-07!126;UBERON:0002048!7.91e-07!22;UBERON:0000117!7.91e-07!22;UBERON:0000171!7.91e-07!22;UBERON:0000170!7.91e-07!22;UBERON:0005597!7.91e-07!22;UBERON:0000118!7.91e-07!22;UBERON:0005178!8.39e-07!34;UBERON:0002224!8.39e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;2.80e-20;4!UBERON:0010133;2.80e-20;4!UBERON:0001905;1.25e-18;2!UBERON:0002757;1.25e-18;2!UBERON:0010134;1.25e-18;2!UBERON:0005408;1.25e-18;2!UBERON:0001899;1.25e-18;2!UBERON:0006853;1.89e-12;3!UBERON:0007685;1.89e-12;3!UBERON:0004134;1.89e-12;3!UBERON:0001894;7.68e-12;7!UBERON:0004913;5.78e-10;1!UBERON:0003703;5.78e-10;1!UBERON:0001174;5.78e-10;1!UBERON:0004914;5.78e-10;1!UBERON:0002784;8.81e-10;4!UBERON:0004211;2.59e-08;10!UBERON:0009773;2.59e-08;10!UBERON:0001231;2.59e-08;10!UBERON:0004810;2.59e-08;10!UBERON:0001225;5.26e-07;12!UBERON:0008987;5.26e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.72e-20,4;UBERON:0010133,1.72e-20,4;UBERON:0001905,7.03e-19,2;UBERON:0002757,7.03e-19,2;UBERON:0010134,7.03e-19,2;UBERON:0005408,7.03e-19,2;UBERON:0001899,7.03e-19,2;UBERON:0006853,3.56e-12,3;UBERON:0007685,3.56e-12,3;UBERON:0004134,3.56e-12,3;UBERON:0001894,5.83e-12,7;UBERON:0006222,5.83e-12,7;UBERON:0004913,3.10e-10,1;UBERON:0003703,3.10e-10,1;UBERON:0001174,3.10e-10,1;UBERON:0004914,3.10e-10,1;UBERON:0002784,6.63e-10,4;UBERON:0004810,3.42e-08,10;UBERON:0001225,6.61e-07,12;UBERON:0008987,6.61e-07,12 | |||
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| ||
|short_description=p@chr17:56033198..56033217,- | |short_description=p@chr17:56033198..56033217,- | ||
}} | }} |
Latest revision as of 19:13, 25 July 2015
Short description: | p@chr17:56033198..56033217, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:56033198..56033217, - |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.10e-19 | 2 |
brush border epithelial cell | 3.56e-12 | 3 |
kidney cortex tubule cell | 3.56e-12 | 3 |
epithelial cell of proximal tubule | 3.56e-12 | 3 |
lung fibroblast | 3.71e-10 | 1 |
kidney tubule cell | 3.42e-08 | 10 |
nephron tubule epithelial cell | 3.42e-08 | 10 |
keratinocyte | 3.48e-08 | 5 |
stratified squamous epithelial cell | 5.92e-07 | 6 |
keratin accumulating cell | 5.92e-07 | 6 |
stratified epithelial cell | 5.92e-07 | 6 |
keratinizing barrier epithelial cell | 5.92e-07 | 6 |
epithelial fate stem cell | 5.92e-07 | 6 |
stratified epithelial stem cell | 5.92e-07 | 6 |
surface ectodermal cell | 5.92e-07 | 6 |
kidney cortical cell | 6.61e-07 | 12 |
renal cortical epithelial cell | 6.61e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 1.72e-20 | 4 |
neuroendocrine gland | 1.72e-20 | 4 |
pineal body | 7.03e-19 | 2 |
regional part of epithalamus | 7.03e-19 | 2 |
secretory circumventricular organ | 7.03e-19 | 2 |
circumventricular organ | 7.03e-19 | 2 |
epithalamus | 7.03e-19 | 2 |
renal cortex tubule | 3.56e-12 | 3 |
region of nephron tubule | 3.56e-12 | 3 |
proximal tubule | 3.56e-12 | 3 |
diencephalon | 5.83e-12 | 7 |
future diencephalon | 5.83e-12 | 7 |
hepatopancreatic ampulla | 3.10e-10 | 1 |
extrahepatic bile duct | 3.10e-10 | 1 |
common bile duct | 3.10e-10 | 1 |
duodenal papilla | 3.10e-10 | 1 |
regional part of diencephalon | 6.63e-10 | 4 |
nephron tubule epithelium | 3.42e-08 | 10 |
cortex of kidney | 6.61e-07 | 12 |
renal parenchyma | 6.61e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.98e-07 | 143 |